Rh5CG175200

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
17034637 .. 17045930
11294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG175200.1

Sequence Viewer

Length: 468 bp
ATGCCAGACATTGGTGTCCTCGGTTTGTCTAGTTATTCTGAGGAAACCACCTTGACATTGAAGGGACAAGAACTCGAATATGACACCACTCTGGATTTGGTAAATCTCATTGATTTCTCATCAAATAACTTAGAAGGAGTAATCCCTGAAGAAATAAGCAGCCTCATTGCCTTGGGGACTCTGAACTTGTCCAGAAATCAACTCACTGGAAACATTCCCTCAAAGATTGGAAACTTGCGGTGGCTGGAAACTCTTGATCTCTCACACAATCACCTCTCTGGGCAGATTCCTCAAAATGAACCTCATCCTGAAAACTACTTTGTGCAGCTTCAGTTCTATCTCAAAAACCGAAATCAGTCGGAGGCAATTGCCACTGTACAATTCATGAAGGTGACGACCTTTCAGGCCAATACACAAATGACCCTTGGGGTACAAAATGTTAACCGAACATGTGAAAGATCTGTTTGA

Protein Analysis

155

Amino Acids

17.37

Weight (kDa)

4.72

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 37 - 92 2.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34930
fragaria_vesca FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 11
AciI CCGC 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 168, 314
AfaI GTAC 2 cut(s) 378, 432
AfiI CCNNNNNNNGG 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 449
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 2 cut(s) 159, 325
AsuHPI GGTGA 2 cut(s) 263, 403
BbvI GCAGC 2 cut(s) 171, 337
BfaI CTAG 1 cut(s) 30
BglII AGATCT 1 cut(s) 458
BisI GCNGC 2 cut(s) 160, 326
BlsI GCNGC 2 cut(s) 161, 327
BsaJI CCNNGG 3 cut(s) 19, 171, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 165
BseDI CCNNGG 3 cut(s) 19, 171, 424
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 11
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 2 cut(s) 171, 337
BsgI GTGCAG 1 cut(s) 344
BshFI GGCC 1 cut(s) 407
BslFI GGGAC 2 cut(s) 78, 190
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 78, 190
BsnI GGCC 1 cut(s) 407
Bsp1407I TGTACA 1 cut(s) 376
Bsp143I GATC 2 cut(s) 256, 458
BspACI CCGC 1 cut(s) 238
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 19, 171, 424
BssMI GATC 2 cut(s) 256, 458
BssT1I CCWWGG 2 cut(s) 171, 424
Bst4CI ACNGT 1 cut(s) 376
BstAUI TGTACA 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 39, 130
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 2 cut(s) 259, 461
BstMBI GATC 2 cut(s) 256, 458
BstNSI RCATGY 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 171, 337
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 1 cut(s) 407
BtsCI GGATG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 204, 372
CciI TCATGA 1 cut(s) 384
Csp6I GTAC 2 cut(s) 377, 431
CviAII CATG 2 cut(s) 385, 450
CviJI RGCY 4 cut(s) 162, 244, 328, 407
CviKI_1 RGCY 4 cut(s) 162, 244, 328, 407
CviQI GTAC 2 cut(s) 377, 431
DdeI CTNAG 2 cut(s) 39, 130
DpnI GATC 2 cut(s) 258, 460
DpnII GATC 2 cut(s) 256, 458
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eco130I CCWWGG 2 cut(s) 171, 424
Eco57I CTGAAG 2 cut(s) 168, 314
EcoT14I CCWWGG 2 cut(s) 171, 424
ErhI CCWWGG 2 cut(s) 171, 424
FaeI CATG 2 cut(s) 388, 453
FaiI YATR 3 cut(s) 81, 386, 451
FaqI GGGAC 2 cut(s) 78, 190
FatI CATG 2 cut(s) 384, 449
Fnu4HI GCNGC 2 cut(s) 160, 326
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 2 cut(s) 160, 326
FspBI CTAG 1 cut(s) 30
GluI GCNGC 2 cut(s) 160, 326
HaeIII GGCC 1 cut(s) 407
Hin1II CATG 2 cut(s) 388, 453
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 2 cut(s) 178, 286
HpaI GTTAAC 1 cut(s) 442
HphI GGTGA 2 cut(s) 263, 403
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 40, 183, 361
Hpy188III TCNNGA 5 cut(s) 92, 192, 254, 308, 385
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 3 cut(s) 55, 128, 382
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 39, 130
Hsp92II CATG 2 cut(s) 388, 453
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 2 cut(s) 256, 458
LpnPI CCDG 9 cut(s) 18, 77, 159, 192, 205, 230, 264, 321, 389
Lsp1109I GCAGC 2 cut(s) 171, 337
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 258, 460
MboI GATC 2 cut(s) 256, 458
MboII GAAGA 1 cut(s) 161
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 458
MluCI AATT 2 cut(s) 366, 380
MlyI GAGTC 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 8 cut(s) 29, 34, 173, 229, 284, 300, 312, 355
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 389
MunI CAATTG 1 cut(s) 366
NdeII GATC 2 cut(s) 256, 458
NlaIII CATG 2 cut(s) 388, 453
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 453
PagI TCATGA 1 cut(s) 384
PciI ACATGT 1 cut(s) 449
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 11
PkrI GCNGC 2 cut(s) 161, 327
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PscI ACATGT 1 cut(s) 449
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 2 cut(s) 378, 432
RsaNI GTAC 2 cut(s) 377, 431
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 2 cut(s) 160, 326
Sau3AI GATC 2 cut(s) 256, 458
SchI GAGTC 1 cut(s) 172
SetI ASST 6 cut(s) 53, 276, 304, 330, 393, 401
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 2 cut(s) 366, 380
SsiI CCGC 1 cut(s) 238
SspMI CTAG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 171, 424
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 366, 380
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 211, 379
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 2 cut(s) 159, 325
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 312, 373, 401
TspRI CASTG 2 cut(s) 211, 379
Van91I CCANNNNNTGG 1 cut(s) 11
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.