Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000048

Physical Location & Seq

Genomic Coordinates Reverse (-)

16908199 .. 16911521

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGATAGCTTCTGTCCAAACCTATTCAAGCCTACCAGCTATCGCTTCCTCGTCAAAAATGTTGCTCACTACTTGCTCTTTGTTATTCTGGCATCTTCATATCTGCACACTACTAAACTGTGTTTGGGAGATGGACTTCCGAGTGGTGTGAGATCATCATCATGCATCGAGGAAGAGAGACGAGCGCTTCTCACCTTCAAAGGAGATGTTACTGATCATTCCGGTAGGCTTTCTTCTTGGGTGGGTCAGGATTGCTGCCGATGGAAAGGGATTTCGTGCAACAACCGTACTGGTCATGTTGCAAGGATGGACCTCCGAAACCTGAATTATGATGGCTTCTACAGGGAGGCTGCTTTGGGGGGTAAGATTAATCCTTCTTTGCTTATCTTTAAGAACTTACGTTACCTTGATCTAAGCGGAAACGATTTTCAAGGATGTCGAATTCCTAACTTCTTTGGGAAGCTTCAAAGTTTGAGGTATCTCAATCTCTCATATAATTCATTTGTGGGAGAGATTCCCCCAGCTCTTGGTAACCTCTCAAACTTGAACTATCTTGACCTCAATTCTGTTTATCGCGGTCTTTCTTCCAAAAACTTGAATTGGCTTTCTCATCTCTCTTCCCTAAAGTACCTCAATCTTGGAGGTGTGGACCTTAGCAGCACAGGAGTAAGTTGGCTACATGATGTCAACATGCTTCCTTCACTCTTAGAGTTGCATTTGTCTTTTTGCGAAATTCAAAACCTTCCACACTACTCCCAGCTTCCGTCAGTGAACTTCACATCCCGCCTATTGGTTCTTGATATATCAGGGAATAATATTAATTCTTCATTTCCCAGCTGGTTTTTTAATCTTACCAACCTCAAAAGACTTGATGCATCTTTCAATTTGTTCGGGTCCTTCCCTGTTGAATTTGCAAACCTCAAGTCTTTGGAAGACCTTGATTTCAGTGGAAGTTCTCTCGGGGATATTAGATCTTTCGGTCAAATTCCCAAAGTCATTGGTACTTTGTGCAGCCTAAGGATATTAGATCTTTCGTCGAACTTATTCAATGGTAGTTTGGAAAATGTTTTGAATGGTTTCTCAAATGGTACAAGTTATAGATTAGGACTGCTAGAAAATCTGAAGGAACTTGACCTCAGTGGGAACCAATTTTCTGGTTCAATTCCACAGTCTATTAGTAATTTATCATCCTTGGAAAAACTAGACATCTCGGATAATAATTTCAATGGGTCCATTCCTGAAAGTTTGGGACAGCTCTCTCAGCTAGTTCACCTCGATCTATCTGATAATTCGTTGGAAGGCAATCTAAATGAAGCCCATTTCCGAACTCTCACAAAGTTGGAGTCTTTTGCAGTCTGTAGCCAATACGAGCCCGTGACTGGGTGCCTCATTTTTAACATGGCTCATGACTGGGTTCCTCCTTTCCAACTTAATTCAATCGACATTGCCGGATGCAGAGTAGGTCCTGCCTTTGGGGTATGGCTTCAGTCTCAAACTGAATTAACGGAAGTCACGCTTTGTAATACTTCAATCTCAGATTTCATACCAGAGGAATGGTTCTTGAAGATATCTTTCCAACTCACATCGCTGGATTTATCTAACAACCAAATTCGTGGAAAGCTTCCATTTCACATGTACTCCCCGTCTTTGAGGTACATAGATTTGAGTCATAATCAATTTGAGGGCCCTCTCCCACATTGGTCTAGTGATGCTGCCAAATATCTCGCTCTTGAAAGCAATTTATTTTCCGGGCCAATTCTCTCAAATTATGATCAATTGTTGCCTAACTTGGTAGGATTGTATCTATCTGACAATCCTCTGAATGGTAGTATACCACCCTCTGTGTGCAACCTGTCAAGTTTGGAGACCCTTACGTTAAGAAGCAATCACTTGTCCGGAGAATTCCCTCAAGGATGGAGTCTTTGGCCAAATATAGAAACTGTAGATGTCTCAGACAACAATTTGTCTGGCAATTTCACCAGTTCAATGGGTGTTCCAAGCTCACTAAGGGTATTGGATCTGAGCAAAAACAATTTCGGGGGTCAAATTCCTTCTTCTCTATTCCAAAACTGCAGCGGGTTGGTGAGTATTGATCTTGGAGGCAATAGATTTACTGGAAGCATACCTTTACAGACAAGACCAAATGTATCATATGATTTTTATATGCTAAGATTGCGATCCAACTCTTTAAGCGGACATATCCCCCATCAACTGTGCTCTCTTCCATCTATTCATATCATAGACCTTGCCCACAACAAATTTTCAGGGACCATTCCCAAGTGTTTGTATAATCTGACTTCTTTGGCCGACGTTGATGACCTTTTTATGTACAGCGAAGAACACGAATTCACATATCATGAGACGGCCAGCTTGACATTGAAGGGACAAGAACTCGCATATAACACCACTCTGGATTTGGTGAAAATCATTGATTTCTCATCAAACAACTTAGAAGGTGAAATCCCTGACGAAGTAAGCAGCCTCATTGCATTGGGCACGTTGAATTTGTCAAGAAATCAAATAACTGGAAACATTCCCTCAAAGATTGGAAACTTGCAGCAGCTGGAAACTCTTGATCTCTCACACAATCACCTCTCCGGACAGATTCCTCAAAGTTTCTCTTCACTAACCTCTCTGTCTCACTTGAACTTGTCTTTCAACAACTTGTCCGGAAGAATTCCTTCAGGCAACCAACTTCAAACACTCACTGATTCATCCATTTACGAAGGCAATCCATCCTTGTGTGGGGTCCCTCTTTCAACTGTCTGCCCGGGAGATGGCGCAGCTGACCCTGACGATGGTGATCATAATGATGATGATGTTGATGAGAATGGGAAGTTTGGTATCGTTGTTAGCGCTGTCCTCGGCTTCATCATAGGCTTCTGGAGTGTCTGTGGCACATTGGTTATGAAGAAATCATGGAGGTATGCCTATTTTCGATTCTTTGATAACATAAAGGAGAAGGCAGCATTACCAATTGCATTGAGAGTGGCTCGTTGGCAAAGGAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

1004

Amino Acids

111.09

Weight (kDa)

5.36

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	57 - 94	1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	123 - 189	1.9e-07	Leucine-rich repeat region
LRR_8	PF13855	132 - 189	3e-07	Leucine rich repeat
LRR_14	PF23598	201 - 355	1.9e-07	Leucine-rich repeat region
LRR_8	PF13855	262 - 318	1.6e-07	Leucine rich repeat
LRR_14	PF23598	328 - 499	7.4e-09	Leucine-rich repeat region
LRR_8	PF13855	371 - 408	6e-06	Leucine rich repeat
LRR_4	PF12799	373 - 413	1.1e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	500 - 560	4.7e-06	Leucine rich repeat
LRR_14	PF23598	807 - 907	1.8e-09	Leucine-rich repeat region
LRR_8	PF13855	831 - 889	2.4e-09	Leucine rich repeat
LRR_4	PF12799	853 - 893	9.1e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34930
fragaria_vesca	FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica	MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica	Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis	pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis	RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata	RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora	Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa	Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha	Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana	Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1383
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	1831
AccII	CGCG	1 cut(s)	576
AccIII	TCCGGA	3 cut(s)	1895, 2597, 2669
AciI	CCGC	5 cut(s)	417, 576, 784, 2076, 2193
AclWI	GGATC	2 cut(s)	2025, 2172
AcoI	YGGCCR	3 cut(s)	1925, 2304, 2364
AcuI	CTGAAG	3 cut(s)	1142, 1469, 2667
AfaI	GTAC	7 cut(s)	289, 629, 1003, 1090, 1637, 1655, 2330
AfeI	AGCGCT	2 cut(s)	186, 2857
AfiI	CCNNNNNNNGG	9 cut(s)	527, 790, 1379, 1380, 1472, 1823, 2745, 2777, 2798
AflIII	ACRYGT	1 cut(s)	1632
AloI	GAACNNNNNNTCC	2 cut(s)	764, 796
Alw21I	GWGCWC	1 cut(s)	2219
Alw26I	GTCTC	6 cut(s)	172, 1494, 1859, 1954, 2354, 2643
AlwI	GGATC	2 cut(s)	2025, 2172
AlwNI	CAGNNNCTG	1 cut(s)	2563
Ama87I	CYCGRG	2 cut(s)	959, 2770
Aor13HI	TCCGGA	3 cut(s)	1895, 2597, 2669
Aor51HI	AGCGCT	2 cut(s)	186, 2857
AoxI	GGCC	5 cut(s)	1684, 1751, 1925, 2304, 2364
ApaI	GGGCCC	1 cut(s)	1688
ArsI	GACNNNNNNTTYG	4 cut(s)	908, 940, 1328, 1360
AseI	ATTAAT	2 cut(s)	369, 819
Asp700I	GAANNNNTTC	3 cut(s)	1043, 1076, 2680
AspLEI	GCGC	3 cut(s)	187, 2783, 2858
AsuC2I	CCSGG	3 cut(s)	1750, 2771, 2772
AsuHPI	GGTGA	8 cut(s)	184, 1262, 1969, 2095, 2431, 2468, 2582, 2813
AvaI	CYCGRG	2 cut(s)	959, 2770
AvaII	GGWCC	7 cut(s)	310, 649, 894, 1230, 1463, 2268, 2749
AxyI	CCTNAGG	1 cut(s)	1016
BaeGI	GKGCMC	2 cut(s)	1688, 2498
BalI	TGGCCA	1 cut(s)	1927
BanI	GGYRCC	1 cut(s)	1383
BanII	GRGCYC	2 cut(s)	1374, 1688
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	2219
BceAI	ACGGC	1 cut(s)	2379
BclI	TGATCA	3 cut(s)	214, 1771, 2803
BcnI	CCSGG	3 cut(s)	1750, 2771, 2772
BcoDI	GTCTC	6 cut(s)	172, 1494, 1859, 1954, 2354, 2643
BfaI	CTAG	4 cut(s)	1112, 1202, 1265, 1704
BfmI	CTRYAG	4 cut(s)	340, 1357, 1941, 2071
BfoI	RGCGCY	2 cut(s)	188, 2859
BglII	AGATCT	2 cut(s)	971, 1027
Bme1390I	CCNGG	3 cut(s)	1750, 2771, 2772
Bme18I	GGWCC	7 cut(s)	310, 649, 894, 1230, 1463, 2268, 2749
BmeT110I	CYCGRG	2 cut(s)	959, 2770
BmiI	GGNNCC	9 cut(s)	895, 1145, 1231, 1385, 1416, 1686, 2269, 2750, 2751
BmrFI	CCNGG	3 cut(s)	1750, 2771, 2772
BmrI	ACTGGG	2 cut(s)	1389, 1420
BmsI	GCATC	6 cut(s)	101, 174, 862, 884, 1442, 1699
BmuI	ACTGGG	2 cut(s)	1389, 1420
BpiI	GAAGAC	1 cut(s)	939
BplI	GAGNNNNNCTC	4 cut(s)	174, 206, 2977, 3009
BpmI	CTGGAG	1 cut(s)	2905
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	905, 1893
BpuMI	CCSGG	3 cut(s)	1750, 2771, 2772
BsaBI	GATNNNNATC	3 cut(s)	157, 2176, 2802
BsaI	GGTCTC	1 cut(s)	1859
BsaJI	CCNNGG	3 cut(s)	1191, 2770, 2863
BsaWI	WCCGGW	4 cut(s)	221, 1895, 2597, 2669
BsaXI	ACNNNNNCTCC	4 cut(s)	1622, 1652, 2878, 2908
Bsc4I	CCNNNNNNNGG	9 cut(s)	527, 790, 1379, 1380, 1472, 1823, 2745, 2777, 2798
Bse1I	ACTGG	6 cut(s)	295, 1384, 1415, 1980, 2119, 2530
Bse21I	CCTNAGG	1 cut(s)	1016
Bse3DI	GCAATG	2 cut(s)	1443, 2484
Bse8I	GATNNNNATC	3 cut(s)	157, 2176, 2802
BseAI	TCCGGA	3 cut(s)	1895, 2597, 2669
BseDI	CCNNGG	3 cut(s)	1191, 2770, 2863
BseGI	GGATG	8 cut(s)	312, 440, 779, 1187, 1457, 1919, 2714, 2735
BseJI	GATNNNNATC	3 cut(s)	157, 2176, 2802
BseLI	CCNNNNNNNGG	9 cut(s)	527, 790, 1379, 1380, 1472, 1823, 2745, 2777, 2798
BseMI	GCAATG	2 cut(s)	1443, 2484
BseMII	CTCAG	5 cut(s)	1150, 1274, 1548, 1965, 2012
BseNI	ACTGG	6 cut(s)	295, 1384, 1415, 1980, 2119, 2530
BseSI	GKGCMC	2 cut(s)	1688, 2498
BseYI	CCCAGC	3 cut(s)	520, 756, 833
BsgI	GTGCAG	2 cut(s)	89, 1030
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	5 cut(s)	1686, 1753, 1927, 2306, 2366
BshNI	GGYRCC	1 cut(s)	1383
BsiHKAI	GWGCWC	1 cut(s)	2219
BsiHKCI	CYCGRG	2 cut(s)	959, 2770
BsiSI	CCGG	7 cut(s)	222, 1449, 1749, 1896, 2598, 2670, 2771
BslFI	GGGAC	4 cut(s)	1263, 2281, 2397, 2735
BslI	CCNNNNNNNGG	9 cut(s)	527, 790, 1379, 1380, 1472, 1823, 2745, 2777, 2798
BsmAI	GTCTC	6 cut(s)	172, 1494, 1859, 1954, 2354, 2643
BsmBI	CGTCTC	2 cut(s)	172, 2354
BsmFI	GGGAC	4 cut(s)	1263, 2281, 2397, 2735
BsnI	GGCC	5 cut(s)	1686, 1753, 1927, 2306, 2366
Bso31I	GGTCTC	1 cut(s)	1859
BsoBI	CYCGRG	2 cut(s)	959, 2770
Bsp120I	GGGCCC	1 cut(s)	1684
Bsp1286I	GDGCHC	4 cut(s)	1374, 1688, 2219, 2498
Bsp13I	TCCGGA	3 cut(s)	1895, 2597, 2669
Bsp1407I	TGTACA	1 cut(s)	2328
BspACI	CCGC	5 cut(s)	417, 576, 784, 2076, 2193
BspANI	GGCC	5 cut(s)	1686, 1753, 1927, 2306, 2366
BspCNI	CTCAG	5 cut(s)	1149, 1273, 1547, 1964, 2013
BspEI	TCCGGA	3 cut(s)	1895, 2597, 2669
BspFNI	CGCG	1 cut(s)	576
BspHI	TCATGA	2 cut(s)	1405, 2356
BspLI	GGNNCC	9 cut(s)	895, 1145, 1231, 1385, 1416, 1686, 2269, 2750, 2751
BspMAI	CTGCAG	1 cut(s)	2075
BspPI	GGATC	2 cut(s)	2025, 2172
BspT107I	GGYRCC	1 cut(s)	1383
BspTNI	GGTCTC	1 cut(s)	1859
BsrDI	GCAATG	2 cut(s)	1443, 2484
BsrGI	TGTACA	1 cut(s)	2328
BsrI	ACTGG	6 cut(s)	295, 1384, 1415, 1980, 2119, 2530
BssECI	CCNNGG	3 cut(s)	1191, 2770, 2863
BssNAI	GTATAC	1 cut(s)	1832
BssT1I	CCWWGG	1 cut(s)	1191
Bst1107I	GTATAC	1 cut(s)	1832
Bst4CI	ACNGT	6 cut(s)	120, 287, 1170, 1942, 2214, 2764
Bst6I	CTCTTC	4 cut(s)	168, 622, 2226, 2626
BstAUI	TGTACA	1 cut(s)	2328
BstC8I	GCNNGC	1 cut(s)	2368
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	8 cut(s)	312, 440, 779, 1187, 1457, 1919, 2714, 2735
BstFNI	CGCG	1 cut(s)	576
BstH2I	RGCGCY	2 cut(s)	188, 2859
BstHHI	GCGC	3 cut(s)	187, 2783, 2858
BstMAI	GTCTC	6 cut(s)	172, 1494, 1859, 1954, 2354, 2643
BstMWI	GCNNNNNNNGC	2 cut(s)	1261, 2173
BstNSI	RCATGY	2 cut(s)	694, 1636
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	1748, 2769, 2770
BstSFI	CTRYAG	4 cut(s)	340, 1357, 1941, 2071
BstSLI	GKGCMC	2 cut(s)	1688, 2498
BstUI	CGCG	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	3 cut(s)	971, 1027, 2017
BstXI	CCANNNNNNTGG	4 cut(s)	1154, 1554, 1613, 1987
BstYI	RGATCY	3 cut(s)	971, 1027, 2017
BstZ17I	GTATAC	1 cut(s)	1832
Bsu36I	CCTNAGG	1 cut(s)	1016
BsuRI	GGCC	5 cut(s)	1686, 1753, 1927, 2306, 2366
BtgZI	GCGATG	1 cut(s)	1569
BtsCI	GGATG	8 cut(s)	312, 440, 779, 1187, 1457, 1919, 2714, 2735
BtsIMutI	CAGTG	4 cut(s)	774, 952, 1144, 2706
Cac8I	GCNNGC	1 cut(s)	2368
CaiI	CAGNNNCTG	1 cut(s)	2563
CciI	TCATGA	2 cut(s)	1405, 2356
CfoI	GCGC	3 cut(s)	187, 2783, 2858
Cfr9I	CCCGGG	1 cut(s)	2770
Csp6I	GTAC	7 cut(s)	288, 628, 1002, 1089, 1636, 1654, 2329
CviAII	CATG	9 cut(s)	162, 296, 680, 691, 1399, 1406, 1633, 2357, 2919
CviQI	GTAC	7 cut(s)	288, 628, 1002, 1089, 1636, 1654, 2329
EaeI	YGGCCR	3 cut(s)	1925, 2304, 2364
Eam1104I	CTCTTC	4 cut(s)	168, 622, 2226, 2626
EarI	CTCTTC	4 cut(s)	168, 622, 2226, 2626
Eco130I	CCWWGG	1 cut(s)	1191
Eco24I	GRGCYC	2 cut(s)	1374, 1688
Eco31I	GGTCTC	1 cut(s)	1859
Eco32I	GATATC	1 cut(s)	1569
Eco47I	GGWCC	7 cut(s)	310, 649, 894, 1230, 1463, 2268, 2749
Eco47III	AGCGCT	2 cut(s)	186, 2857
Eco57I	CTGAAG	3 cut(s)	1142, 1469, 2667
Eco81I	CCTNAGG	1 cut(s)	1016
Eco88I	CYCGRG	2 cut(s)	959, 2770
Eco91I	GGTNACC	1 cut(s)	530
EcoO109I	RGGNCCY	5 cut(s)	894, 1463, 1684, 1685, 2749
EcoO65I	GGTNACC	1 cut(s)	530
EcoRI	GAATTC	4 cut(s)	441, 1901, 2345, 2676
EcoRV	GATATC	1 cut(s)	1569
EcoT14I	CCWWGG	1 cut(s)	1191
EcoT22I	ATGCAT	2 cut(s)	167, 877
EcoT38I	GRGCYC	2 cut(s)	1374, 1688
ErhI	CCWWGG	1 cut(s)	1191
Esp3I	CGTCTC	2 cut(s)	172, 2354
FaeI	CATG	9 cut(s)	165, 299, 683, 694, 1402, 1409, 1636, 2360, 2922
FalI	AAGNNNNNCTT	9 cut(s)	1500, 1532, 2110, 2142, 2605, 2637, 2665, 2697, 2995
FaqI	GGGAC	4 cut(s)	1263, 2281, 2397, 2735
FatI	CATG	9 cut(s)	161, 295, 679, 690, 1398, 1405, 1632, 2356, 2918
FauI	CCCGC	2 cut(s)	791, 2069
FauNDI	CATATG	1 cut(s)	2152
FbaI	TGATCA	3 cut(s)	214, 1771, 2803
FblI	GTMKAC	1 cut(s)	1831
FokI	GGATG	8 cut(s)	319, 447, 766, 1174, 1464, 1926, 2701, 2722
FriOI	GRGCYC	2 cut(s)	1374, 1688
FspBI	CTAG	4 cut(s)	1112, 1202, 1265, 1704
GlaI	GCGC	3 cut(s)	186, 2782, 2857
GsaI	CCCAGC	3 cut(s)	524, 760, 837
GsuI	CTGGAG	1 cut(s)	2905
HaeII	RGCGCY	2 cut(s)	188, 2859
HaeIII	GGCC	5 cut(s)	1686, 1753, 1927, 2306, 2366
HapII	CCGG	7 cut(s)	222, 1449, 1749, 1896, 2598, 2670, 2771
HhaI	GCGC	3 cut(s)	187, 2783, 2858
Hin1II	CATG	9 cut(s)	165, 299, 683, 694, 1402, 1409, 1636, 2360, 2922
Hin6I	GCGC	3 cut(s)	185, 2781, 2856
HinP1I	GCGC	3 cut(s)	185, 2781, 2856
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HindIII	AAGCTT	2 cut(s)	461, 1619
HinfI	GANTC	7 cut(s)	514, 1343, 1666, 1918, 2605, 2711, 2940
HpaII	CCGG	7 cut(s)	222, 1449, 1749, 1896, 2598, 2670, 2771
HphI	GGTGA	8 cut(s)	184, 1262, 1969, 2095, 2431, 2468, 2582, 2813
Hpy166II	GTNNAC	5 cut(s)	649, 688, 772, 1270, 1832
Hpy8I	GTNNAC	5 cut(s)	649, 688, 772, 1270, 1832
Hpy99I	CGWCG	2 cut(s)	1039, 2312
HpyCH4III	ACNGT	6 cut(s)	120, 287, 1170, 1942, 2214, 2764
HpyCH4IV	ACGT	4 cut(s)	400, 1874, 2310, 2498
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1261, 2173
HpySE526I	ACGT	4 cut(s)	400, 1874, 2310, 2498
Hsp92II	CATG	9 cut(s)	165, 299, 683, 694, 1402, 1409, 1636, 2360, 2922
HspAI	GCGC	3 cut(s)	185, 2781, 2856
KflI	GGGWCCC	1 cut(s)	2749
Kpn2I	TCCGGA	3 cut(s)	1895, 2597, 2669
Ksp22I	TGATCA	3 cut(s)	214, 1771, 2803
LweI	GCATC	6 cut(s)	101, 174, 862, 884, 1442, 1699
MaeI	CTAG	4 cut(s)	1112, 1202, 1265, 1704
MaeII	ACGT	4 cut(s)	400, 1874, 2310, 2498
MaeIII	GTNAC	5 cut(s)	208, 401, 530, 1375, 1510
MfeI	CAATTG	2 cut(s)	1775, 2976
MflI	RGATCY	3 cut(s)	971, 1027, 2017
MhlI	GDGCHC	4 cut(s)	1374, 1688, 2219, 2498
MlsI	TGGCCA	1 cut(s)	1927
MluNI	TGGCCA	1 cut(s)	1927
MlyI	GAGTC	3 cut(s)	1352, 1675, 1927
MmeI	TCCRAC	5 cut(s)	1275, 1320, 1450, 1600, 2205
Mox20I	TGGCCA	1 cut(s)	1927
Mph1103I	ATGCAT	2 cut(s)	167, 877
MroI	TCCGGA	3 cut(s)	1895, 2597, 2669
MroXI	GAANNNNTTC	3 cut(s)	1043, 1076, 2680
MscI	TGGCCA	1 cut(s)	1927
MseI	TTAA	9 cut(s)	369, 390, 819, 846, 1395, 1431, 1502, 1877, 2189
MslI	CAYNNNNRTG	3 cut(s)	160, 2740, 2811
Msp20I	TGGCCA	1 cut(s)	1927
MspA1I	CMGCKG	4 cut(s)	837, 2076, 2563, 2786
MspI	CCGG	7 cut(s)	222, 1449, 1749, 1896, 2598, 2670, 2771
MspR9I	CCNGG	3 cut(s)	1750, 2771, 2772
MunI	CAATTG	2 cut(s)	1775, 2976
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	1261, 2173
NciI	CCSGG	3 cut(s)	1750, 2771, 2772
NdeI	CATATG	1 cut(s)	2152
NlaIII	CATG	9 cut(s)	165, 299, 683, 694, 1402, 1409, 1636, 2360, 2922
NlaIV	GGNNCC	9 cut(s)	895, 1145, 1231, 1385, 1416, 1686, 2269, 2750, 2751
NmeAIII	GCCGAG	1 cut(s)	2844
NmuCI	GTSAC	2 cut(s)	1375, 1510
NsiI	ATGCAT	2 cut(s)	167, 877
NspI	RCATGY	2 cut(s)	694, 1636
PagI	TCATGA	2 cut(s)	1405, 2356
PciI	ACATGT	1 cut(s)	1632
PdmI	GAANNNNTTC	3 cut(s)	1043, 1076, 2680
PfeI	GAWTC	4 cut(s)	514, 2605, 2711, 2940
PflMI	CCANNNNNTGG	1 cut(s)	527
PleI	GAGTC	3 cut(s)	1351, 1674, 1926
PpsI	GAGTC	3 cut(s)	1351, 1674, 1926
PpuMI	RGGWCCY	3 cut(s)	894, 1463, 2749
PscI	ACATGT	1 cut(s)	1632
PshBI	ATTAAT	2 cut(s)	369, 819
Psp5II	RGGWCCY	3 cut(s)	894, 1463, 2749
PspEI	GGTNACC	1 cut(s)	530
PspFI	CCCAGC	3 cut(s)	520, 756, 833
PspN4I	GGNNCC	9 cut(s)	895, 1145, 1231, 1385, 1416, 1686, 2269, 2750, 2751
PspOMI	GGGCCC	1 cut(s)	1684
PspPPI	RGGWCCY	3 cut(s)	894, 1463, 2749
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PstI	CTGCAG	1 cut(s)	2075
PstNI	CAGNNNCTG	1 cut(s)	2563
PsuI	RGATCY	3 cut(s)	971, 1027, 2017
PvuII	CAGCTG	3 cut(s)	837, 2563, 2786
RsaI	GTAC	7 cut(s)	289, 629, 1003, 1090, 1637, 1655, 2330
RsaNI	GTAC	7 cut(s)	288, 628, 1002, 1089, 1636, 1654, 2329
RseI	CAYNNNNRTG	3 cut(s)	160, 2740, 2811
SaqAI	TTAA	9 cut(s)	369, 390, 819, 846, 1395, 1431, 1502, 1877, 2189
SchI	GAGTC	3 cut(s)	1352, 1675, 1927
ScrFI	CCNGG	3 cut(s)	1750, 2771, 2772
SduI	GDGCHC	4 cut(s)	1374, 1688, 2219, 2498
SfaNI	GCATC	6 cut(s)	101, 174, 862, 884, 1442, 1699
SfcI	CTRYAG	4 cut(s)	340, 1357, 1941, 2071
SinI	GGWCC	7 cut(s)	310, 649, 894, 1230, 1463, 2268, 2749
SmaI	CCCGGG	1 cut(s)	2772
SmiMI	CAYNNNNRTG	3 cut(s)	160, 2740, 2811
SmlI	CTYRAG	2 cut(s)	920, 1908
SmoI	CTYRAG	2 cut(s)	920, 1908
SsiI	CCGC	5 cut(s)	417, 576, 784, 2076, 2193
SspI	AATATT	1 cut(s)	817
SspMI	CTAG	4 cut(s)	1112, 1202, 1265, 1704
StyD4I	CCNGG	3 cut(s)	1748, 2769, 2770
StyI	CCWWGG	1 cut(s)	1191
TaaI	ACNGT	6 cut(s)	120, 287, 1170, 1942, 2214, 2764
TaiI	ACGT	4 cut(s)	403, 1877, 2313, 2501
TaqI	TCGA	6 cut(s)	168, 439, 1037, 1275, 1440, 2938
TaqII	GACCGA	1 cut(s)	968
TatI	WGTACW	2 cut(s)	1635, 2328
TfiI	GAWTC	4 cut(s)	514, 2605, 2711, 2940
Tru1I	TTAA	9 cut(s)	369, 390, 819, 846, 1395, 1431, 1502, 1877, 2189
Tru9I	TTAA	9 cut(s)	369, 390, 819, 846, 1395, 1431, 1502, 1877, 2189
TscAI	CASTG	4 cut(s)	774, 952, 1144, 2713
TseFI	GTSAC	2 cut(s)	1375, 1510
Tsp45I	GTSAC	2 cut(s)	1375, 1510
TspDTI	ATGAA	9 cut(s)	87, 489, 816, 1326, 1531, 2222, 2703, 2860, 2924
TspGWI	ACGGA	2 cut(s)	753, 1520
TspMI	CCCGGG	1 cut(s)	2770
TspRI	CASTG	4 cut(s)	774, 952, 1144, 2713
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	7 cut(s)	310, 649, 894, 1230, 1463, 2268, 2749
VspI	ATTAAT	2 cut(s)	369, 819
XceI	RCATGY	2 cut(s)	694, 1636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2413
XmaI	CCCGGG	1 cut(s)	2770
XmiI	GTMKAC	1 cut(s)	1831
XmnI	GAANNNNTTC	3 cut(s)	1043, 1076, 2680
XspI	CTAG	4 cut(s)	1112, 1202, 1265, 1704
Zsp2I	ATGCAT	2 cut(s)	167, 877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.