MD05G1248100.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
37968457 .. 37970622
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1248100.v1.1.491

Sequence Viewer

Length: 2166 bp
ATGGATACCTTGCTTGCAAACACCTTATTCAATCCCCTCAATATTTCTCTCTCCTTTCTCATTTTGCTTTTGGCATCTACGTATCTACCCACTACCATAATCTGCTTGGGTGATGTCGGAGTTCCGAGCACTGGCACTGTGAAACCATTATGCATTGAGGAAGAAAGGCGAGCACTTGTCAGCTTTAAACAACATCTTGTTGATCCTTCTGGTAGGCTTTCCTCTTGGGCGGGTCATGATTGCTGTCGATGGGAAGGAATTTCATGCAACAACAGCACCGGCCATGTTGTGAAGATGGACCTCCGGAATCCATATCCAGATTCCCGTTCTTATGAAGAGTGGGACGAGTCGGCTTATGAAAGGTCTTTCCTGGGAGGTAAGATAAATGCTTCTTTGTTGAGCTTGAAACATTTAAAATACCTGGACCTCAGCTGTAATGAGTTTCAGGGCATTCGCATTCCGATGTTCTTTGGGGAGCTTGAAAGTTTGCAATATCTCAATTTCTACTTTGCGTCATTTGAGGGAGAGATTCCCCCCTCTCTTGGTAACCTGTCAAGCCTGAATATTCTTGATCTCGGGATGAATTCCCACTTGTCTTCCAGAAACTTGACTTGGCTTTCTCACCTCTCTTCCCTAAAATACCTTAATCTCAATTACATGGACCTTAGCCGCACAGGAGCCAGTTGGGCATATCATATTAACATGCTTCCTTCATTGTTAGAGTTACACTTATCTTCGTGTCAAATTGAAAGCATTCCACTCTCACTCCAAAGGGTTAACTTCCTTCCACTCTCACTCCAGAGGATTAACTTGACATCACTTTTGGTCCTTGATATGTCGAATAACGGTATTAAATATTCTTCACTTCCCAATTGGTTTTTTAATCTTACTAGCCTCATAACACTTGATCTATCGAGGAATAATTTCAGTAGTCCTTTTCCAAATGAATTTGCAAACTTCAAATCTCTAGAACACCTTGATTTATCGAGAACAGGCTTAAATGGTCAAATTCCGAAAGTTAGTGGAAATTTGTGCAAGCTAAAGGTCTTAAGCCTTTCTGGCAACAAGTTTGATGGTGGGGGGATTGAAGAGTTTTGGAGGAGCGTCTCAAATTGTCCAAATAATTCATTAGAGTTGCTAGATTTGTCTTCTTGTGAGCTGGAAAGCCAACTGCCGACCTCCTTGGGAGTGTTAAAAAGTTTGCAGAATCTCTACCTTGGTGGAAACTCTTTGTGGGGCTCAATTCCAGATTCCATCGGAAACTTGTCGTCCTTGAAATCATTGTACCTCTCTTCTAATAAGATGAATGGCTCCATTCCAAAAAGTCTGGGACAACTCTATGAGCTAGTTGACCTCGATCTGTCTAATAATTCATGGGAAGGTACTCTAACGGAAGCCCATTTCAGAAACCTCACGAGATTACAAGATTTTCAAGTAGGAATTCAAGTCACAAACCCACCCATGTCCCTCATTTTTGACGTGGCTTCTGCTTGGGATCCTCCTTTCAAGCTCCAGTCAATTGCGATCATAAACTGTCGGGTAGGTCCTGGTTTTTGGGTATGGCTTCAATCTCAAACTGAACTGATCTACGTCACTCTTAGTGGTATTGGAACCTTTGAAGATTTGATACTAGAGGAATGGTTGTTGAAGATGTCTTCCCAACTCAAATATTTGGATTTATCTAACAACCAATTACGTGGAAACTTTCCATCCCATTTGAAATTTCCAAATTTAGGGTCTATTGATTTGAGTCATAATCAGTTGGAGGGCCCACTCCCACTTTGGTGGTCCACTAGTTTCGATTCCCTTTATCTTGATAGGAATCTATTTTCCGGGCCAATTCCCTCCAATATTGACCAAATGATACCCAAGTTGTACATTTTGGATCTTTCTGATAATCATTTGAATGACACTATTCCTCCCTCTATCTGCAACATGCAAAACTTGGAATACTTGTCCATAAGGAGCAATCAATTTTCTGGGGAAATGCCTCATGCATGGAGTGTGGGAAGCAAAATTTTGTTTCTAGATGTTGGTCACAACAATCTCTCTGGTAATATTCCCACTTCATTGGGGGTATTAAGTTCACTGGAAGTATTAAAGCTCAACAACAACAATTTTGAGTGGTGTAAATTCCTGATTCCTTGCAAAATTGTTCTGGTTTGA

Protein Analysis

722

Amino Acids

80.72

Weight (kDa)

5.32

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 53 - 90 6.3e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 132 - 214 4.1e-07 Leucine-rich repeat region
LRR_14 PF23598 255 - 370 7.1e-08 Leucine-rich repeat region
LRR_8 PF13855 290 - 332 1.4e-07 Leucine rich repeat
LRR_14 PF23598 376 - 584 7e-14 Leucine-rich repeat region
LRR_8 PF13855 400 - 457 1.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34930
fragaria_vesca FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 2 cut(s) 230, 670
AclWI GGATC 4 cut(s) 197, 1490, 1503, 1893
AcoI YGGCCR 1 cut(s) 280
AfaI GTAC 3 cut(s) 1286, 1384, 1877
AfiI CCNNNNNNNGG 3 cut(s) 131, 542, 1733
AflII CTTAAG 1 cut(s) 1048
AhlI ACTAGT 1 cut(s) 1793
AjiI CACGTC 1 cut(s) 1480
AjnI CCWGG 3 cut(s) 369, 420, 1546
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
AleI CACNNNNGTG 1 cut(s) 1783
AluBI AGCT 9 cut(s) 183, 402, 432, 478, 1039, 1159, 1345, 1510, 2104
AluI AGCT 9 cut(s) 183, 402, 432, 478, 1039, 1159, 1345, 1510, 2104
Alw21I GWGCWC 2 cut(s) 131, 175
Alw26I GTCTC 1 cut(s) 1111
AlwI GGATC 4 cut(s) 197, 1490, 1503, 1893
Ama87I CYCGRG 1 cut(s) 575
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 3 cut(s) 280, 1768, 1835
ApaI GGGCCC 1 cut(s) 1772
ArsI GACNNNNNNTTYG 4 cut(s) 805, 837, 1721, 1753
Asp700I GAANNNNTTC 2 cut(s) 753, 923
AspS9I GGNCC 9 cut(s) 298, 424, 661, 826, 1544, 1768, 1769, 1788, 1835
AsuC2I CCSGG 1 cut(s) 1834
AsuHPI GGTGA 2 cut(s) 122, 614
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 6 cut(s) 298, 424, 661, 826, 1544, 1788
BaeGI GKGCMC 1 cut(s) 1772
BaeI ACNNNNGTAYC 2 cut(s) 1856, 1889
BamHI GGATCC 1 cut(s) 1495
BanII GRGCYC 2 cut(s) 1241, 1772
BarI GAAGNNNNNNTAC 2 cut(s) 1611, 1643
BauI CACGAG 1 cut(s) 1414
BbsI GAAGAC 3 cut(s) 588, 1140, 1647
Bbv12I GWGCWC 2 cut(s) 131, 175
BbvCI CCTCAGC 1 cut(s) 428
BccI CCATC 5 cut(s) 243, 289, 1067, 1262, 1717
BciT130I CCWGG 3 cut(s) 371, 422, 1548
BcnI CCSGG 1 cut(s) 1834
BcoDI GTCTC 1 cut(s) 1111
BcuI ACTAGT 1 cut(s) 1793
BfaI CTAG 7 cut(s) 891, 968, 1139, 1346, 1631, 1794, 2027
BfrI CTTAAG 1 cut(s) 1048
BglI GCCNNNNNGGC 2 cut(s) 686, 1059
BisI GCNGC 1 cut(s) 670
BlsI GCNGC 1 cut(s) 671
Bme1390I CCNGG 4 cut(s) 371, 422, 1548, 1834
Bme18I GGWCC 6 cut(s) 298, 424, 661, 826, 1544, 1788
BmeT110I CYCGRG 1 cut(s) 575
BmgBI CACGTC 1 cut(s) 1480
BmgT120I GGNCC 9 cut(s) 298, 424, 661, 826, 1544, 1768, 1769, 1788, 1835
BmiI GGNNCC 5 cut(s) 679, 1312, 1497, 1612, 1770
BmrFI CCNGG 4 cut(s) 371, 422, 1548, 1834
BmsI GCATC 1 cut(s) 83
BpiI GAAGAC 3 cut(s) 588, 1140, 1647
BpmI CTGGAG 2 cut(s) 782, 1496
Bpu10I CCTNAGC 2 cut(s) 428, 665
BpuMI CCSGG 1 cut(s) 1834
BsaAI YACGTR 2 cut(s) 81, 1697
BsaBI GATNNNNATC 1 cut(s) 1821
BsaJI CCNNGG 3 cut(s) 370, 1182, 1216
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 6 cut(s) 750, 780, 780, 810, 1903, 1933
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 542, 1733
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 4 cut(s) 136, 681, 1513, 2094
Bse8I GATNNNNATC 1 cut(s) 1821
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 3 cut(s) 371, 422, 1548
BseDI CCNNGG 3 cut(s) 370, 1182, 1216
BseGI GGATG 2 cut(s) 585, 1709
BseJI GATNNNNATC 1 cut(s) 1821
BseLI CCNNNNNNNGG 3 cut(s) 131, 542, 1733
BseMII CTCAG 1 cut(s) 442
BseNI ACTGG 4 cut(s) 136, 681, 1513, 2094
BseRI GAGGAG 1 cut(s) 1114
BseSI GKGCMC 1 cut(s) 1772
BshFI GGCC 3 cut(s) 282, 1770, 1837
BsiHKAI GWGCWC 2 cut(s) 131, 175
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 3 cut(s) 279, 304, 1833
BslFI GGGAC 3 cut(s) 356, 1344, 1450
BslI CCNNNNNNNGG 3 cut(s) 131, 542, 1733
BsmAI GTCTC 1 cut(s) 1111
BsmBI CGTCTC 1 cut(s) 1111
BsmFI GGGAC 3 cut(s) 356, 1344, 1450
BsmI GAATGC 3 cut(s) 450, 456, 753
BsnI GGCC 3 cut(s) 282, 1770, 1837
BsoBI CYCGRG 1 cut(s) 575
Bsp120I GGGCCC 1 cut(s) 1768
Bsp1286I GDGCHC 4 cut(s) 131, 175, 1241, 1772
Bsp13I TCCGGA 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 1875
Bsp143I GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
BspACI CCGC 2 cut(s) 230, 670
BspANI GGCC 3 cut(s) 282, 1770, 1837
BspCNI CTCAG 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 303
BspHI TCATGA 1 cut(s) 235
BspLI GGNNCC 5 cut(s) 679, 1312, 1497, 1612, 1770
BspPI GGATC 4 cut(s) 197, 1490, 1503, 1893
BspTI CTTAAG 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 1875
BsrI ACTGG 4 cut(s) 136, 681, 1513, 2094
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 370, 1182, 1216
BssMI GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
BssSI CACGAG 1 cut(s) 1414
BssT1I CCWWGG 2 cut(s) 1182, 1216
Bst2BI CACGAG 1 cut(s) 1414
Bst2UI CCWGG 3 cut(s) 371, 422, 1548
Bst4CI ACNGT 3 cut(s) 139, 848, 1535
Bst6I CTCTTC 4 cut(s) 330, 634, 1083, 1297
BstAFI CTTAAG 1 cut(s) 1048
BstAUI TGTACA 1 cut(s) 1875
BstBAI YACGTR 2 cut(s) 81, 1697
BstC8I GCNNGC 3 cut(s) 15, 171, 1037
BstDEI CTNAG 3 cut(s) 428, 665, 1598
BstEII GGTNACC 1 cut(s) 545
BstF5I GGATG 2 cut(s) 585, 1709
BstKTI GATC 8 cut(s) 205, 574, 910, 1360, 1498, 1527, 1587, 1888
BstMAI GTCTC 1 cut(s) 1111
BstMBI GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
BstMWI GCNNNNNNNGC 3 cut(s) 273, 686, 1059
BstNI CCWGG 3 cut(s) 371, 422, 1548
BstNSI RCATGY 2 cut(s) 706, 1939
BstPI GGTNACC 1 cut(s) 545
BstSCI CCNGG 4 cut(s) 369, 420, 1546, 1832
BstSLI GKGCMC 1 cut(s) 1772
BstSNI TACGTA 1 cut(s) 81
BstV2I GAAGAC 3 cut(s) 588, 1140, 1647
BstX2I RGATCY 2 cut(s) 1495, 1885
BstXI CCANNNNNNTGG 3 cut(s) 1697, 1785, 2071
BstYI RGATCY 2 cut(s) 1495, 1885
BsuRI GGCC 3 cut(s) 282, 1770, 1837
BtrI CACGTC 1 cut(s) 1480
BtsCI GGATG 2 cut(s) 585, 1709
BtsIMutI CAGTG 3 cut(s) 129, 135, 2087
Cac8I GCNNGC 3 cut(s) 15, 171, 1037
CciI TCATGA 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 9 cut(s) 298, 424, 661, 826, 1544, 1768, 1769, 1788, 1835
CseI GACGC 2 cut(s) 501, 1093
Csp6I GTAC 3 cut(s) 1285, 1383, 1876
CviQI GTAC 3 cut(s) 1285, 1383, 1876
DdeI CTNAG 3 cut(s) 428, 665, 1598
DpnI GATC 8 cut(s) 204, 573, 909, 1359, 1497, 1526, 1586, 1887
DpnII GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
DraI TTTAAA 2 cut(s) 187, 414
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 4 cut(s) 330, 634, 1083, 1297
EarI CTCTTC 4 cut(s) 330, 634, 1083, 1297
Eco105I TACGTA 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 1182, 1216
Eco24I GRGCYC 2 cut(s) 1241, 1772
Eco47I GGWCC 6 cut(s) 298, 424, 661, 826, 1544, 1788
Eco88I CYCGRG 1 cut(s) 575
Eco91I GGTNACC 1 cut(s) 545
EcoO109I RGGNCCY 2 cut(s) 1544, 1768
EcoO65I GGTNACC 1 cut(s) 545
EcoRI GAATTC 2 cut(s) 583, 1440
EcoRII CCWGG 3 cut(s) 369, 420, 1546
EcoT14I CCWWGG 2 cut(s) 1182, 1216
EcoT22I ATGCAT 2 cut(s) 155, 1999
EcoT38I GRGCYC 2 cut(s) 1241, 1772
ErhI CCWWGG 2 cut(s) 1182, 1216
Esp3I CGTCTC 1 cut(s) 1111
FaqI GGGAC 3 cut(s) 356, 1344, 1450
FauI CCCGC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 670
FokI GGATG 2 cut(s) 592, 1696
FriOI GRGCYC 2 cut(s) 1241, 1772
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 7 cut(s) 891, 968, 1139, 1346, 1631, 1794, 2027
GluI GCNGC 1 cut(s) 670
GsuI CTGGAG 2 cut(s) 782, 1496
HaeIII GGCC 3 cut(s) 282, 1770, 1837
HapII CCGG 3 cut(s) 279, 304, 1833
HgaI GACGC 2 cut(s) 501, 1093
HincII GTYRAC 2 cut(s) 778, 1351
HindII GTYRAC 2 cut(s) 778, 1351
HpaI GTTAAC 1 cut(s) 778
HpaII CCGG 3 cut(s) 279, 304, 1833
HphI GGTGA 2 cut(s) 122, 614
Hpy166II GTNNAC 4 cut(s) 778, 1351, 1791, 2087
Hpy188I TCNGA 7 cut(s) 119, 126, 462, 1014, 1259, 1406, 1894
Hpy8I GTNNAC 4 cut(s) 778, 1351, 1791, 2087
HpyAV CCTTC 5 cut(s) 216, 248, 720, 794, 1373
HpyCH4III ACNGT 3 cut(s) 139, 848, 1535
HpyCH4IV ACGT 4 cut(s) 80, 1479, 1590, 1696
HpyF10VI GCNNNNNNNGC 3 cut(s) 273, 686, 1059
HpyF3I CTNAG 3 cut(s) 428, 665, 1598
HpySE526I ACGT 4 cut(s) 80, 1479, 1590, 1696
Kpn2I TCCGGA 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 778
Kzo9I GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
LmnI GCTCC 6 cut(s) 475, 677, 1101, 1316, 1515, 1965
LweI GCATC 1 cut(s) 83
MaeI CTAG 7 cut(s) 891, 968, 1139, 1346, 1631, 1794, 2027
MaeII ACGT 4 cut(s) 80, 1479, 1590, 1696
MaeIII GTNAC 5 cut(s) 545, 723, 1447, 1591, 2036
MalI GATC 8 cut(s) 204, 573, 909, 1359, 1497, 1526, 1586, 1887
MboI GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
MfeI CAATTG 2 cut(s) 871, 1518
MflI RGATCY 2 cut(s) 1495, 1885
MhlI GDGCHC 4 cut(s) 131, 175, 1241, 1772
MlyI GAGTC 2 cut(s) 356, 1759
MmeI TCCRAC 2 cut(s) 97, 1743
Mph1103I ATGCAT 2 cut(s) 155, 1999
MroI TCCGGA 1 cut(s) 303
MroXI GAANNNNTTC 2 cut(s) 753, 923
MslI CAYNNNNRTG 3 cut(s) 461, 1783, 1905
MspA1I CMGCKG 1 cut(s) 432
MspCI CTTAAG 1 cut(s) 1048
MspI CCGG 3 cut(s) 279, 304, 1833
MspR9I CCNGG 4 cut(s) 371, 422, 1548, 1834
MunI CAATTG 2 cut(s) 871, 1518
Mva1269I GAATGC 3 cut(s) 450, 456, 753
MvaI CCWGG 3 cut(s) 371, 422, 1548
MwoI GCNNNNNNNGC 3 cut(s) 273, 686, 1059
NciI CCSGG 1 cut(s) 1834
NdeII GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
NlaIV GGNNCC 5 cut(s) 679, 1312, 1497, 1612, 1770
NmuCI GTSAC 3 cut(s) 1447, 1591, 2036
NsiI ATGCAT 2 cut(s) 155, 1999
NspI RCATGY 2 cut(s) 706, 1939
OliI CACNNNNGTG 1 cut(s) 1783
PagI TCATGA 1 cut(s) 235
PctI GAATGC 3 cut(s) 450, 456, 753
PdmI GAANNNNTTC 2 cut(s) 753, 923
PfeI GAWTC 8 cut(s) 307, 320, 529, 1207, 1250, 1802, 1822, 2140
PkrI GCNGC 1 cut(s) 671
PleI GAGTC 2 cut(s) 355, 1758
PpsI GAGTC 2 cut(s) 355, 1758
Ppu21I YACGTR 2 cut(s) 81, 1697
PpuMI RGGWCCY 1 cut(s) 1544
Psp5II RGGWCCY 1 cut(s) 1544
Psp6I CCWGG 3 cut(s) 369, 420, 1546
PspEI GGTNACC 1 cut(s) 545
PspGI CCWGG 3 cut(s) 369, 420, 1546
PspN4I GGNNCC 5 cut(s) 679, 1312, 1497, 1612, 1770
PspOMI GGGCCC 1 cut(s) 1768
PspPI GGNCC 9 cut(s) 298, 424, 661, 826, 1544, 1768, 1769, 1788, 1835
PspPPI RGGWCCY 1 cut(s) 1544
PsuI RGATCY 2 cut(s) 1495, 1885
PvuII CAGCTG 1 cut(s) 432
RsaI GTAC 3 cut(s) 1286, 1384, 1877
RsaNI GTAC 3 cut(s) 1285, 1383, 1876
RseI CAYNNNNRTG 3 cut(s) 461, 1783, 1905
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 8 cut(s) 202, 571, 907, 1357, 1495, 1524, 1584, 1885
Sau96I GGNCC 9 cut(s) 298, 424, 661, 826, 1544, 1768, 1769, 1788, 1835
SchI GAGTC 2 cut(s) 356, 1759
ScrFI CCNGG 4 cut(s) 371, 422, 1548, 1834
SduI GDGCHC 4 cut(s) 131, 175, 1241, 1772
SfaNI GCATC 1 cut(s) 83
SinI GGWCC 6 cut(s) 298, 424, 661, 826, 1544, 1788
SmiMI CAYNNNNRTG 3 cut(s) 461, 1783, 1905
SmlI CTYRAG 1 cut(s) 1048
SmoI CTYRAG 1 cut(s) 1048
SnaBI TACGTA 1 cut(s) 81
SpeI ACTAGT 1 cut(s) 1793
SsiI CCGC 2 cut(s) 230, 670
SspI AATATT 6 cut(s) 43, 565, 857, 1670, 1852, 2059
SspMI CTAG 7 cut(s) 891, 968, 1139, 1346, 1631, 1794, 2027
StyD4I CCNGG 4 cut(s) 369, 420, 1546, 1832
StyI CCWWGG 2 cut(s) 1182, 1216
TaaI ACNGT 3 cut(s) 139, 848, 1535
TaiI ACGT 4 cut(s) 83, 1482, 1593, 1699
TaqI TCGA 6 cut(s) 247, 839, 914, 986, 1356, 1800
TatI WGTACW 1 cut(s) 1875
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 8 cut(s) 307, 320, 529, 1207, 1250, 1802, 1822, 2140
TscAI CASTG 3 cut(s) 136, 142, 2094
TseFI GTSAC 3 cut(s) 1447, 1591, 2036
Tsp45I GTSAC 3 cut(s) 1447, 1591, 2036
TspGWI ACGGA 1 cut(s) 1406
TspRI CASTG 3 cut(s) 136, 142, 2094
Vha464I CTTAAG 1 cut(s) 1048
VpaK11BI GGWCC 6 cut(s) 298, 424, 661, 826, 1544, 1788
XbaI TCTAGA 2 cut(s) 967, 2026
XceI RCATGY 2 cut(s) 706, 1939
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 1779
XmnI GAANNNNTTC 2 cut(s) 753, 923
XspI CTAG 7 cut(s) 891, 968, 1139, 1346, 1631, 1794, 2027
Zsp2I ATGCAT 2 cut(s) 155, 1999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.