MD05G1225300.v1.1

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
35813985 .. 35814362
378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1225300.v1.1.491

Sequence Viewer

Length: 378 bp
ATGTTTAGTTCTGCATTTCCCAGTTGGTTTTTTAATCTTACCAACCTCATAACACTTCATCTATCCAAGAATAATTTCAGTGGTTCTTTTCCAAATGAATTTGCAAGTCTCAAATCTCTTCAGGACCTTGATTTATCTGAAACAGGCTTAAAAGGTCAAATTCCTAAAGTCATTGGAAATTTTTGCAAGCTGAAGTTCTTAAGTCTTTCAGGAAACAAATTTAATGGGGGGATCGAAGAATTTTGGAGGAGTTTCTCAAATTGTCCAAATAATACATTAGAGTCATTAGATTTGTCTTACTGTGGGATGCAAAGCCAAATGCCGTCCTCCTTAGGAATGTTTAAAAGTTTGCAGAATCTCAACCTTAGGTACAAATAA

Protein Analysis

126

Amino Acids

14.08

Weight (kDa)

8.86

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 5 - 48 2.5e-09 Leucine rich repeat
LRR_14 PF23598 12 - 122 5.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34930
fragaria_vesca FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 5 cut(s) 98, 159, 178, 218, 239
AcuI CTGAAG 2 cut(s) 104, 212
AfaI GTAC 1 cut(s) 371
AflII CTTAAG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 1 cut(s) 239
ApoI RAATTY 5 cut(s) 98, 159, 178, 218, 239
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 124
AxyI CCTNAGG 2 cut(s) 331, 365
BceAI ACGGC 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 21
Bse21I CCTNAGG 2 cut(s) 331, 365
BseGI GGATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 231
BspPI GGATC 1 cut(s) 239
BspTI CTTAAG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 21
BssMI GATC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 331, 365
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 1 cut(s) 231
Bsu36I CCTNAGG 2 cut(s) 331, 365
BtsCI GGATG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 370
CviJI RGCY 3 cut(s) 147, 190, 315
CviKI_1 RGCY 3 cut(s) 147, 190, 315
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 331, 365
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
DraI TTTAAA 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 104, 212
Eco81I CCTNAGG 2 cut(s) 331, 365
EcoO109I RGGNCCY 1 cut(s) 124
FaiI YATR 1 cut(s) 50
FokI GGATG 1 cut(s) 319
HinfI GANTC 2 cut(s) 281, 355
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 122, 210
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4V TGCA 5 cut(s) 14, 104, 186, 310, 352
HpyF3I CTNAG 2 cut(s) 331, 365
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 4 cut(s) 34, 107, 129, 195
LweI GCATC 1 cut(s) 297
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 110, 248
MluCI AATT 7 cut(s) 73, 98, 159, 178, 218, 239, 259
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 3 cut(s) 56, 240, 337
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 5 cut(s) 33, 149, 200, 222, 342
MspCI CTTAAG 1 cut(s) 199
NdeII GATC 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 355
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PpuMI RGGWCCY 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 124
PspPI GGNCC 1 cut(s) 124
PspPPI RGGWCCY 1 cut(s) 124
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 5 cut(s) 33, 149, 200, 222, 342
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 290
SetI ASST 6 cut(s) 48, 129, 157, 192, 366, 371
SfaNI GCATC 1 cut(s) 297
SgeI CNNG 8 cut(s) 33, 79, 117, 134, 140, 156, 199, 222
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 7 cut(s) 73, 98, 159, 178, 218, 239, 259
TaaI ACNGT 1 cut(s) 302
TaqI TCGA 1 cut(s) 234
TasI AATT 7 cut(s) 73, 98, 159, 178, 218, 239, 259
TfiI GAWTC 1 cut(s) 355
Tru1I TTAA 5 cut(s) 33, 149, 200, 222, 342
Tru9I TTAA 5 cut(s) 33, 149, 200, 222, 342
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 47, 111
TspRI CASTG 1 cut(s) 85
Vha464I CTTAAG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 5 cut(s) 98, 159, 178, 218, 239
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.