Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000048

Physical Location & Seq

Genomic Coordinates Reverse (-)

17355169 .. 17358279

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGGATAGGTTCTGTGCAAATGTATTCAAGCCTACCAGCTATCGCTTCCTCATCAACATTGTTGCTCGCTACTTGCTCTTTCTTTTTCTGGCATCTTCATATCTGCACACTACTAAACTCTGTTTGGGAGATGGACTTCCGAGTGGTGTGAGATCATCATCATGCATCGAGGAAGAGAGACGAGCGCTTCTCAGCTTCAAAGGAGATGTTACTGATCATTCCGGTAGGCTTTCTTCTTGGGTGGGTCAGGATTGCTGCCGATGGAAAGGGATTTCGTGCAACAACCGTACAGGTCATGTTGCAAGGATGGACCTCCGAAACCTGAATTATGATCAAGGCTTCTACGGGGAGACTTCTTTGGGGGGTAAGATTAATCCTTCTTTGCTTAGCTTTAAGAACTTACGTTACCTTGATCTAAGCGGAAACGATTTTCAAGGACGTCGAATTCCTAACTTCTTTGGGAAGCTGCAAAGTTTGAGGTATCTCAATCTCTCATATAATTCATTTGTGGGAGAGATTCCCCCAGCTCTTGGTAACCTCTCAAACTTGAACTATCTTGACCTCAGTTCTGATTATCACAGTCATGTTTCTTCCAAAAACTTGAATTGGCTCTCTCATCTCTCTTCCCTAAAGTATCTCAATCTTGGACGTGTGAACCTTAGGAGCACAGGAGTAAGTTGGCTACATGATGTCAACATGCTTCCTTCACTCTTAGAGTTGCATTTGTCTGACTGCCAAATTCAAAACCTTCCACACTCCCACCTGCCGTCAGTGAACTTCACATCCCGCCTATTGGCTCTTGATATATCCGAGAATCATATTGATTCTGCATTTCCCAGCTGGTTTTTTAATCTTACCAACCTCAAAAGACTTGTTGCATATTCCAATTTTTTCGGGCCCTTCCCTGTTGAATTTTCAAACCTCAAGTCTTTGGAAGGCCTTGGTTTGAGTGATAATTCTATCCAAGGTCAAATTCCCAAAGTCTTTGGTACTTTGTGCAGCCTAAGAATATTAGATCTTTCGGAGAACCTGTTCAATGGTAGTTTGGAAGAGGTTTTGAATGGTTTCTCAAACTGTACAAGTCGTAGATTAGAGTCACTTTATTTGTCCGGCAATATGGTGGAAGGTGAACTGCCTGCCGCCTTAGGAATGCTAGAAAATCTGAAGGAACTTGACCTCAGTGGCAATATGGTGGAAGGTGAACTGCCTGCCTCCTTAGGAATGCTACAAAATCTGAAGGAACTTGACCTCAGTTCAAACGAATTTTCTGGTTCAATTCCACAATCTATTGGTAATTTGTCATCTTTGGAGACACTAGACATCTCTGATAATCTTATCGAGATCATTCCTGAAAGTGTGGGACAACTCTCTCACCTAGTTCACCTACATCTAGATTCGAATTCGTTGGAAGGCATTCTAACTGAAGCCCATTTCCGATCTCTTACAAAGTTGGAGTCTTTTACAGTCAGCCCACGTCCAGACCGACCTAGCTCCATCATTTTTAACATGGCTCATGAGTGGGTTCCTCCCTTCCAGCTTGATTCACTCGACATTGCCGACTGCAGAGTAGGTCCTGCCTTTGGGGTATGGCTTAAGTCTCAAACTGAATTAAAGCTTCTCAGGCTTAGTAATACTTCAATCTCAGATTTCATACCAGAGGAATGGTTCTTGAAGATATCTTTCCAACTCATAGGGCTGGATTTATCTAACAACCAAATTCGTGGAAAACTTCCATTTCACATGAACTCCCCGTCTTTGAAGTATATAGATTTGAGTCACAATCAATTTGAGGGCCCTCTGCCACATTGGTCTAGTGATGCTGCCACCTATCTCGATCTTCAAAGCAATTTATTTTCTGGGCCAATTCCCTCAAATTATGATAAACTGTTGCCAAACTTGGGAGCATTGTATCTATCTGACAATCATCTGAATGGTAGTATACCACCCTCTGTGTGCAACCTGTCAAGTTTGCAAACCCTGACGTTAAGAAGCAATCACTTCTCTGGGGAATTTCCTCAAGCATGGAGTCTGTGGCCAAATATATGGGTTGTAGATGTCTCAGACAACAATTTGTCTGGCATTTTCGCCAGTTCAATGGGTGTTCCAAGCTCACTAGAAGTATTGGATCTGAGCAACAACAATTTCGGGGGTCAAATTCCTTCTTCTCTATTCCAAAACTGCAGCCGGTTGCGGAGTATTGATCTTGGAGGCAATAGATTTACTGGAAGCATACCTTTACAGACAAGATCAAATGTATCATCGTTATTGTATATGCTAAGATTGCGATCCAACTCTTTAAGCGGACATATCCCCAACCGATTGTGCTCTGTTCCATCTCTTCATATCATAGACCTTGCCCACAACAAATTTTCAGGGACCATTCCCAAGTGTTTGTATAATCTGACTGCTTTGGCCTACGGTAATGGAACTGGTCAGCCCTTGTTGGTAAATTATCTTGAGAAGACTAGCTTGATATTGAAGGGACAAGAACTCGTATATAACACCACTCTGAATTTGGTGAATAGCATTGATTTCTCATCAAATAACTTAGAAGGTGTAATCCCTGAAGAACTAAGCAGTCTCATTGCATTGGGTACATTGAACTTGTCAAGAAATCAATTGAGCGGAAACATTCCTTCCAAGATTGGAAACTTGCGATGGCTGGAAACTCTTGATCTCTCACATAATCACCTCTCCGGGCAGATTCCTCAGAGTTTCTCTTCATTAACCTCTTTGGCTCACTTGAACTTGTCTTTCAACAACTTGTCCGGAAGAATTCCTTCAGGTAACCAACTTCAAACACTCGATGATTCATCCATTTACAACGGCAACCCATCCTTGTGTGGGGTTCCTCTTTCAACTGTTTGCCCAGGAGATGGCGCACTCGCACCAGCTGACCCTGACGATGATGATCATAATGATGAGAATGGGAAGTTTGGAATGTATGTTAGTGCTGTACTCGGCTTCACCATAGGCTTCTGGAGTGTTTGTGGCACATTGGTTATGAAGAAATCATGGAGGTATGCCTATTTTCGATTCTTTGATAACATAAAGGAGAGGGCAGTATTAGCAATTGCATTGAGAGTCGCTCGTTGGCAAAGGAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

1036

Amino Acids

114.8

Weight (kDa)

5.96

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	57 - 94	6.1e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	123 - 192	9.8e-09	Leucine-rich repeat region
LRR_8	PF13855	133 - 190	8.8e-07	Leucine rich repeat
LRR_14	PF23598	204 - 369	2.1e-08	Leucine-rich repeat region
LRR_8	PF13855	263 - 321	2.3e-06	Leucine rich repeat
LRR_14	PF23598	367 - 542	5.9e-15	Leucine-rich repeat region
LRR_4	PF12799	410 - 449	9.4e-06	Leucine Rich repeats (2 copies)
LRR_8	PF13855	411 - 469	2.8e-09	Leucine rich repeat
LRR_8	PF13855	683 - 740	3e-07	Leucine rich repeat
LRR_14	PF23598	849 - 940	1.5e-08	Leucine-rich repeat region
LRR_8	PF13855	883 - 922	7.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34930
fragaria_vesca	FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica	MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica	Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis	pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis	RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata	RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora	Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa	Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha	Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana	Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	771
AatII	GACGTC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	771
AccB7I	CCANNNNNTGG	2 cut(s)	530, 2876
AccBSI	CCGCTC	1 cut(s)	2625
AccI	GTMKAC	1 cut(s)	1939
AccIII	TCCGGA	1 cut(s)	2768
AciI	CCGC	6 cut(s)	420, 787, 1140, 2191, 2301, 2625
AclWI	GGATC	2 cut(s)	2133, 2280
AcoI	YGGCCR	1 cut(s)	2033
AcuI	CTGAAG	5 cut(s)	1184, 1256, 1443, 2586, 2766
AcyI	GRCGYC	1 cut(s)	439
AfaI	GTAC	5 cut(s)	289, 991, 1078, 2596, 2958
AfeI	AGCGCT	1 cut(s)	186
AfiI	CCNNNNNNNGG	6 cut(s)	530, 793, 1580, 1898, 2844, 2876
AflII	CTTAAG	1 cut(s)	1592
AflIII	ACRYGT	1 cut(s)	649
AjiI	CACGTC	2 cut(s)	650, 1475
AjnI	CCWGG	1 cut(s)	2869
AjuI	GAANNNNNNNTTGG	2 cut(s)	957, 989
AloI	GAACNNNNNNTCC	4 cut(s)	767, 799, 1016, 1048
Alw21I	GWGCWC	2 cut(s)	668, 2327
Alw26I	GTCTC	6 cut(s)	172, 344, 1304, 1602, 2062, 2585
AlwI	GGATC	2 cut(s)	2133, 2280
Aor13HI	TCCGGA	1 cut(s)	2768
Aor51HI	AGCGCT	1 cut(s)	186
AoxI	GGCC	6 cut(s)	896, 937, 1792, 1859, 2033, 2412
ApaI	GGGCCC	2 cut(s)	900, 1796
ApeKI	GCWGC	5 cut(s)	255, 466, 999, 1820, 2181
ArsI	GACNNNNNNTTYG	4 cut(s)	911, 943, 1439, 1471
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	4 cut(s)	1031, 1064, 1413, 2779
AspLEI	GCGC	2 cut(s)	187, 2882
AspS9I	GGNCC	8 cut(s)	310, 896, 897, 1571, 1792, 1793, 1859, 2376
AsuC2I	CCSGG	1 cut(s)	2698
AsuHPI	GGTGA	7 cut(s)	1139, 1211, 1364, 1373, 2530, 2681, 2959
AsuII	TTCGAA	1 cut(s)	1397
AvaII	GGWCC	3 cut(s)	310, 1571, 2376
AxyI	CCTNAGG	3 cut(s)	659, 1144, 1216
BaeGI	GKGCMC	2 cut(s)	900, 1796
BalI	TGGCCA	1 cut(s)	2035
BanII	GRGCYC	2 cut(s)	900, 1796
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BbsI	GAAGAC	1 cut(s)	2468
Bbv12I	GWGCWC	2 cut(s)	668, 2327
BbvI	GCAGC	5 cut(s)	242, 453, 1011, 1807, 2193
BccI	CCATC	8 cut(s)	125, 255, 301, 1502, 2341, 2652, 2842, 2870
BceAI	ACGGC	2 cut(s)	751, 2842
BciT130I	CCWGG	1 cut(s)	2871
BclI	TGATCA	3 cut(s)	214, 331, 2911
BcnI	CCSGG	1 cut(s)	2698
BcoDI	GTCTC	6 cut(s)	172, 344, 1304, 1602, 2062, 2585
BfaI	CTAG	8 cut(s)	1154, 1316, 1376, 1391, 1488, 1812, 2114, 2466
BfmI	CTRYAG	2 cut(s)	1561, 2179
BfoI	RGCGCY	1 cut(s)	188
BfrI	CTTAAG	1 cut(s)	1592
BfuAI	ACCTGC	1 cut(s)	771
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	6 cut(s)	256, 467, 1000, 1140, 1821, 2182
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	6 cut(s)	257, 468, 1001, 1141, 1822, 2183
Bme1390I	CCNGG	2 cut(s)	2698, 2871
Bme18I	GGWCC	3 cut(s)	310, 1571, 2376
BmgBI	CACGTC	2 cut(s)	650, 1475
BmgT120I	GGNCC	8 cut(s)	310, 896, 897, 1571, 1792, 1793, 1859, 2376
BmiI	GGNNCC	5 cut(s)	898, 1524, 1794, 2377, 2850
BmrFI	CCNGG	2 cut(s)	2698, 2871
BmsI	GCATC	3 cut(s)	101, 174, 1807
BpiI	GAAGAC	1 cut(s)	2468
BplI	GAGNNNNNCTC	4 cut(s)	174, 206, 3073, 3105
BpmI	CTGGAG	1 cut(s)	3001
Bpu1102I	GCTNAGC	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	1397
BpuEI	CTTGAG	3 cut(s)	908, 2001, 2477
BpuMI	CCSGG	1 cut(s)	2698
BsaBI	GATNNNNATC	3 cut(s)	157, 2284, 2910
BsaHI	GRCGYC	1 cut(s)	439
BsaJI	CCNNGG	3 cut(s)	940, 964, 2869
BsaWI	WCCGGW	2 cut(s)	221, 2768
BsaXI	ACNNNNNCTCC	6 cut(s)	1016, 1046, 1730, 1760, 2974, 3004
Bsc4I	CCNNNNNNNGG	6 cut(s)	530, 793, 1580, 1898, 2844, 2876
Bse118I	RCCGGY	1 cut(s)	2184
Bse1I	ACTGG	3 cut(s)	2088, 2227, 2434
Bse21I	CCTNAGG	3 cut(s)	659, 1144, 1216
Bse3DI	GCAATG	2 cut(s)	1551, 2583
Bse8I	GATNNNNATC	3 cut(s)	157, 2284, 2910
BseAI	TCCGGA	1 cut(s)	2768
BseBI	CCWGG	1 cut(s)	2871
BseDI	CCNNGG	3 cut(s)	940, 964, 2869
BseGI	GGATG	4 cut(s)	312, 782, 2813, 2834
BseJI	GATNNNNATC	3 cut(s)	157, 2284, 2910
BseLI	CCNNNNNNNGG	6 cut(s)	530, 793, 1580, 1898, 2844, 2876
BseMI	GCAATG	2 cut(s)	1551, 2583
BseMII	CTCAG	9 cut(s)	205, 577, 1192, 1264, 1633, 1656, 2073, 2120, 2723
BseNI	ACTGG	3 cut(s)	2088, 2227, 2434
BseSI	GKGCMC	2 cut(s)	900, 1796
BseXI	GCAGC	5 cut(s)	242, 453, 1011, 1807, 2193
BseYI	CCCAGC	2 cut(s)	523, 836
BsgI	GTGCAG	2 cut(s)	89, 1018
BshFI	GGCC	6 cut(s)	898, 939, 1794, 1861, 2035, 2414
BsiHKAI	GWGCWC	2 cut(s)	668, 2327
BsiSI	CCGG	5 cut(s)	222, 1110, 2185, 2697, 2769
BslFI	GGGAC	3 cut(s)	1374, 2389, 2496
BslI	CCNNNNNNNGG	6 cut(s)	530, 793, 1580, 1898, 2844, 2876
BsmAI	GTCTC	6 cut(s)	172, 344, 1304, 1602, 2062, 2585
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	3 cut(s)	1374, 2389, 2496
BsmI	GAATGC	3 cut(s)	1155, 1227, 1413
BsnI	GGCC	6 cut(s)	898, 939, 1794, 1861, 2035, 2414
Bsp119I	TTCGAA	1 cut(s)	1397
Bsp120I	GGGCCC	2 cut(s)	896, 1792
Bsp1286I	GDGCHC	4 cut(s)	668, 900, 1796, 2327
Bsp13I	TCCGGA	1 cut(s)	2768
Bsp1407I	TGTACA	1 cut(s)	1076
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	6 cut(s)	420, 787, 1140, 2191, 2301, 2625
BspANI	GGCC	6 cut(s)	898, 939, 1794, 1861, 2035, 2414
BspCNI	CTCAG	9 cut(s)	204, 576, 1191, 1263, 1632, 1655, 2072, 2121, 2722
BspEI	TCCGGA	1 cut(s)	2768
BspHI	TCATGA	1 cut(s)	1513
BspLI	GGNNCC	5 cut(s)	898, 1524, 1794, 2377, 2850
BspMAI	CTGCAG	2 cut(s)	1565, 2183
BspMI	ACCTGC	1 cut(s)	771
BspPI	GGATC	2 cut(s)	2133, 2280
BspT104I	TTCGAA	1 cut(s)	1397
BspTI	CTTAAG	1 cut(s)	1592
BsrBI	CCGCTC	1 cut(s)	2625
BsrDI	GCAATG	2 cut(s)	1551, 2583
BsrFI	RCCGGY	1 cut(s)	2184
BsrGI	TGTACA	1 cut(s)	1076
BsrI	ACTGG	3 cut(s)	2088, 2227, 2434
BssAI	RCCGGY	1 cut(s)	2184
BssECI	CCNNGG	3 cut(s)	940, 964, 2869
BssNAI	GTATAC	1 cut(s)	1940
BssNI	GRCGYC	1 cut(s)	439
BssT1I	CCWWGG	2 cut(s)	940, 964
Bst1107I	GTATAC	1 cut(s)	1940
Bst2UI	CCWGG	1 cut(s)	2871
Bst4CI	ACNGT	7 cut(s)	287, 581, 1076, 1465, 1887, 2420, 2863
Bst6I	CTCTTC	5 cut(s)	168, 628, 1044, 2343, 2725
BstACI	GRCGYC	1 cut(s)	439
BstAFI	CTTAAG	1 cut(s)	1592
BstAUI	TGTACA	1 cut(s)	1076
BstBI	TTCGAA	1 cut(s)	1397
BstC8I	GCNNGC	3 cut(s)	67, 1137, 1209
BstEII	GGTNACC	2 cut(s)	533, 2786
BstF5I	GGATG	4 cut(s)	312, 782, 2813, 2834
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	187, 2882
BstMAI	GTCTC	6 cut(s)	172, 344, 1304, 1602, 2062, 2585
BstMWI	GCNNNNNNNGC	3 cut(s)	1621, 2281, 3068
BstNI	CCWGG	1 cut(s)	2871
BstNSI	RCATGY	1 cut(s)	700
BstPI	GGTNACC	2 cut(s)	533, 2786
BstSCI	CCNGG	2 cut(s)	2696, 2869
BstSFI	CTRYAG	2 cut(s)	1561, 2179
BstSLI	GKGCMC	2 cut(s)	900, 1796
BstV1I	GCAGC	5 cut(s)	242, 453, 1011, 1807, 2193
BstV2I	GAAGAC	1 cut(s)	2468
BstX2I	RGATCY	2 cut(s)	1015, 2125
BstXI	CCANNNNNNTGG	4 cut(s)	1662, 1721, 2043, 2095
BstYI	RGATCY	2 cut(s)	1015, 2125
BstZ17I	GTATAC	1 cut(s)	1940
Bsu36I	CCTNAGG	3 cut(s)	659, 1144, 1216
BsuRI	GGCC	6 cut(s)	898, 939, 1794, 1861, 2035, 2414
BtgZI	GCGATG	1 cut(s)	2671
BtrI	CACGTC	2 cut(s)	650, 1475
BtsCI	GGATG	4 cut(s)	312, 782, 2813, 2834
BtsIMutI	CAGTG	2 cut(s)	777, 1186
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	3 cut(s)	67, 1137, 1209
CciI	TCATGA	1 cut(s)	1513
CfoI	GCGC	2 cut(s)	187, 2882
Cfr10I	RCCGGY	1 cut(s)	2184
Cfr13I	GGNCC	8 cut(s)	310, 896, 897, 1571, 1792, 1793, 1859, 2376
Csp6I	GTAC	5 cut(s)	288, 990, 1077, 2595, 2957
CviQI	GTAC	5 cut(s)	288, 990, 1077, 2595, 2957
EaeI	YGGCCR	1 cut(s)	2033
Eam1104I	CTCTTC	5 cut(s)	168, 628, 1044, 2343, 2725
EarI	CTCTTC	5 cut(s)	168, 628, 1044, 2343, 2725
Eco130I	CCWWGG	2 cut(s)	940, 964
Eco147I	AGGCCT	1 cut(s)	939
Eco24I	GRGCYC	2 cut(s)	900, 1796
Eco32I	GATATC	1 cut(s)	1677
Eco47I	GGWCC	3 cut(s)	310, 1571, 2376
Eco47III	AGCGCT	1 cut(s)	186
Eco57I	CTGAAG	5 cut(s)	1184, 1256, 1443, 2586, 2766
Eco81I	CCTNAGG	3 cut(s)	659, 1144, 1216
Eco91I	GGTNACC	2 cut(s)	533, 2786
EcoO109I	RGGNCCY	4 cut(s)	897, 1571, 1792, 1793
EcoO65I	GGTNACC	2 cut(s)	533, 2786
EcoRI	GAATTC	3 cut(s)	444, 1399, 2775
EcoRII	CCWGG	1 cut(s)	2869
EcoRV	GATATC	1 cut(s)	1677
EcoT14I	CCWWGG	2 cut(s)	940, 964
EcoT22I	ATGCAT	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	900, 1796
ErhI	CCWWGG	2 cut(s)	940, 964
Esp3I	CGTCTC	1 cut(s)	172
FalI	AAGNNNNNCTT	7 cut(s)	2218, 2250, 2453, 2485, 2764, 2796, 3091
FaqI	GGGAC	3 cut(s)	1374, 2389, 2496
FauI	CCCGC	1 cut(s)	794
FbaI	TGATCA	3 cut(s)	214, 331, 2911
FblI	GTMKAC	1 cut(s)	1939
Fnu4HI	GCNGC	6 cut(s)	256, 467, 1000, 1140, 1821, 2182
FokI	GGATG	4 cut(s)	319, 769, 2800, 2821
FriOI	GRGCYC	2 cut(s)	900, 1796
Fsp4HI	GCNGC	6 cut(s)	256, 467, 1000, 1140, 1821, 2182
FspBI	CTAG	8 cut(s)	1154, 1316, 1376, 1391, 1488, 1812, 2114, 2466
GlaI	GCGC	2 cut(s)	186, 2881
GluI	GCNGC	6 cut(s)	256, 467, 1000, 1140, 1821, 2182
GsaI	CCCAGC	2 cut(s)	527, 840
GsuI	CTGGAG	1 cut(s)	3001
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	6 cut(s)	898, 939, 1794, 1861, 2035, 2414
HapII	CCGG	5 cut(s)	222, 1110, 2185, 2697, 2769
HhaI	GCGC	2 cut(s)	187, 2882
Hin1I	GRCGYC	1 cut(s)	439
Hin6I	GCGC	2 cut(s)	185, 2880
HinP1I	GCGC	2 cut(s)	185, 2880
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	1613
HpaII	CCGG	5 cut(s)	222, 1110, 2185, 2697, 2769
HphI	GGTGA	7 cut(s)	1139, 1211, 1364, 1373, 2530, 2681, 2959
Hpy166II	GTNNAC	7 cut(s)	655, 694, 775, 1130, 1202, 1381, 1940
Hpy8I	GTNNAC	7 cut(s)	655, 694, 775, 1130, 1202, 1381, 1940
Hpy99I	CGWCG	1 cut(s)	444
HpyCH4III	ACNGT	7 cut(s)	287, 581, 1076, 1465, 1887, 2420, 2863
HpyCH4IV	ACGT	5 cut(s)	403, 439, 649, 1474, 1982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1621, 2281, 3068
HpySE526I	ACGT	5 cut(s)	403, 439, 649, 1474, 1982
Hsp92I	GRCGYC	1 cut(s)	439
HspAI	GCGC	2 cut(s)	185, 2880
Kpn2I	TCCGGA	1 cut(s)	2768
Ksp22I	TGATCA	3 cut(s)	214, 331, 2911
LmnI	GCTCC	3 cut(s)	663, 1496, 1901
Lsp1109I	GCAGC	5 cut(s)	242, 453, 1011, 1807, 2193
LweI	GCATC	3 cut(s)	101, 174, 1807
MaeI	CTAG	8 cut(s)	1154, 1316, 1376, 1391, 1488, 1812, 2114, 2466
MaeII	ACGT	5 cut(s)	403, 439, 649, 1474, 1982
MaeIII	GTNAC	6 cut(s)	208, 404, 533, 1095, 1775, 2786
MbiI	CCGCTC	1 cut(s)	2625
MfeI	CAATTG	2 cut(s)	2618, 3072
MflI	RGATCY	2 cut(s)	1015, 2125
MhlI	GDGCHC	4 cut(s)	668, 900, 1796, 2327
MlsI	TGGCCA	1 cut(s)	2035
MluNI	TGGCCA	1 cut(s)	2035
MlyI	GAGTC	5 cut(s)	1103, 1463, 1783, 2035, 3093
MmeI	TCCRAC	4 cut(s)	1386, 1431, 1708, 2313
Mox20I	TGGCCA	1 cut(s)	2035
Mph1103I	ATGCAT	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	2768
MroXI	GAANNNNTTC	4 cut(s)	1031, 1064, 1413, 2779
MscI	TGGCCA	1 cut(s)	2035
MseI	TTAA	9 cut(s)	372, 393, 849, 1503, 1593, 1610, 1985, 2297, 2726
MslI	CAYNNNNRTG	5 cut(s)	160, 582, 1929, 2839, 2919
Msp20I	TGGCCA	1 cut(s)	2035
MspA1I	CMGCKG	2 cut(s)	840, 2894
MspCI	CTTAAG	1 cut(s)	1592
MspI	CCGG	5 cut(s)	222, 1110, 2185, 2697, 2769
MspR9I	CCNGG	2 cut(s)	2698, 2871
MunI	CAATTG	2 cut(s)	2618, 3072
Mva1269I	GAATGC	3 cut(s)	1155, 1227, 1413
MvaI	CCWGG	1 cut(s)	2871
MwoI	GCNNNNNNNGC	3 cut(s)	1621, 2281, 3068
NciI	CCSGG	1 cut(s)	2698
NlaIV	GGNNCC	5 cut(s)	898, 1524, 1794, 2377, 2850
NmeAIII	GCCGAG	1 cut(s)	2940
NmuCI	GTSAC	2 cut(s)	1095, 1775
NsiI	ATGCAT	1 cut(s)	167
NspI	RCATGY	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	1397
PagI	TCATGA	1 cut(s)	1513
PaqCI	CACCTGC	1 cut(s)	771
PceI	AGGCCT	1 cut(s)	939
PcsI	WCGNNNNNNNCGW	2 cut(s)	1480, 1554
PctI	GAATGC	3 cut(s)	1155, 1227, 1413
PdmI	GAANNNNTTC	4 cut(s)	1031, 1064, 1413, 2779
PfeI	GAWTC	8 cut(s)	517, 814, 824, 1394, 1541, 2704, 2810, 3036
PflMI	CCANNNNNTGG	2 cut(s)	530, 2876
PkrI	GCNGC	6 cut(s)	257, 468, 1001, 1141, 1822, 2183
PleI	GAGTC	5 cut(s)	1102, 1462, 1782, 2034, 3092
PpsI	GAGTC	5 cut(s)	1102, 1462, 1782, 2034, 3092
PpuMI	RGGWCCY	1 cut(s)	1571
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	1571
Psp6I	CCWGG	1 cut(s)	2869
PspEI	GGTNACC	2 cut(s)	533, 2786
PspFI	CCCAGC	2 cut(s)	523, 836
PspGI	CCWGG	1 cut(s)	2869
PspN4I	GGNNCC	5 cut(s)	898, 1524, 1794, 2377, 2850
PspOMI	GGGCCC	2 cut(s)	896, 1792
PspPI	GGNCC	8 cut(s)	310, 896, 897, 1571, 1792, 1793, 1859, 2376
PspPPI	RGGWCCY	1 cut(s)	1571
PsrI	GAACNNNNNNTAC	2 cut(s)	389, 421
PstI	CTGCAG	2 cut(s)	1565, 2183
PsuI	RGATCY	2 cut(s)	1015, 2125
PvuII	CAGCTG	2 cut(s)	840, 2894
RsaI	GTAC	5 cut(s)	289, 991, 1078, 2596, 2958
RsaNI	GTAC	5 cut(s)	288, 990, 1077, 2595, 2957
RseI	CAYNNNNRTG	5 cut(s)	160, 582, 1929, 2839, 2919
SaqAI	TTAA	9 cut(s)	372, 393, 849, 1503, 1593, 1610, 1985, 2297, 2726
SatI	GCNGC	6 cut(s)	256, 467, 1000, 1140, 1821, 2182
Sau96I	GGNCC	8 cut(s)	310, 896, 897, 1571, 1792, 1793, 1859, 2376
SchI	GAGTC	5 cut(s)	1103, 1463, 1783, 2035, 3093
ScrFI	CCNGG	2 cut(s)	2698, 2871
SduI	GDGCHC	4 cut(s)	668, 900, 1796, 2327
SfaNI	GCATC	3 cut(s)	101, 174, 1807
SfcI	CTRYAG	2 cut(s)	1561, 2179
SfuI	TTCGAA	1 cut(s)	1397
SinI	GGWCC	3 cut(s)	310, 1571, 2376
SmiMI	CAYNNNNRTG	5 cut(s)	160, 582, 1929, 2839, 2919
SmlI	CTYRAG	4 cut(s)	923, 1592, 2016, 2456
SmoI	CTYRAG	4 cut(s)	923, 1592, 2016, 2456
SseBI	AGGCCT	1 cut(s)	939
SsiI	CCGC	6 cut(s)	420, 787, 1140, 2191, 2301, 2625
SspI	AATATT	1 cut(s)	1011
SspMI	CTAG	8 cut(s)	1154, 1316, 1376, 1391, 1488, 1812, 2114, 2466
StuI	AGGCCT	1 cut(s)	939
StyD4I	CCNGG	2 cut(s)	2696, 2869
StyI	CCWWGG	2 cut(s)	940, 964
TaaI	ACNGT	7 cut(s)	287, 581, 1076, 1465, 1887, 2420, 2863
TaiI	ACGT	5 cut(s)	406, 442, 652, 1477, 1985
TaqI	TCGA	8 cut(s)	168, 442, 1338, 1397, 1548, 1833, 2805, 3034
TaqII	GACCGA	1 cut(s)	1497
TatI	WGTACW	2 cut(s)	1076, 2956
TauI	GCSGC	1 cut(s)	1142
TfiI	GAWTC	8 cut(s)	517, 814, 824, 1394, 1541, 2704, 2810, 3036
Tru1I	TTAA	9 cut(s)	372, 393, 849, 1503, 1593, 1610, 1985, 2297, 2726
Tru9I	TTAA	9 cut(s)	372, 393, 849, 1503, 1593, 1610, 1985, 2297, 2726
TscAI	CASTG	2 cut(s)	777, 1186
TseFI	GTSAC	2 cut(s)	1095, 1775
TseI	GCWGC	5 cut(s)	255, 466, 999, 1820, 2181
Tsp45I	GTSAC	2 cut(s)	1095, 1775
TspDTI	ATGAA	8 cut(s)	87, 492, 1639, 1757, 2330, 2712, 2802, 3020
TspRI	CASTG	2 cut(s)	777, 1186
Van91I	CCANNNNNTGG	2 cut(s)	530, 2876
Vha464I	CTTAAG	1 cut(s)	1592
VpaK11BI	GGWCC	3 cut(s)	310, 1571, 2376
VspI	ATTAAT	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	1390
XceI	RCATGY	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2512
XmiI	GTMKAC	1 cut(s)	1939
XmnI	GAANNNNTTC	4 cut(s)	1031, 1064, 1413, 2779
XspI	CTAG	8 cut(s)	1154, 1316, 1376, 1391, 1488, 1812, 2114, 2466
ZraI	GACGTC	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.