Rroxscaffold_1G00056500

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
78243412 .. 78245588
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056500.1

Sequence Viewer

Length: 2091 bp
ATGGATAGCTTCTGTGCGAACCTATTCAAGCCTACCAGCTATCGCTTCCTCGTCAAAAATGTTGCTCACTACTTGCTCTTTGTTATTCTGGCATCTTCATATCTGCACTCTACTAAACTGTGTTTGGGAGATGGACTTCCGAGTGGTGTGAGATCATCATCATGCATCGAGGAAGAGAGACGAGCGCTTCTCAGCTTCAAAGGAGATGTTACTGATCATTCCGGTAGGCTTTCTTCTTGGGTGGGCCAGGATTGCTGTCAATGGAAAGGCATTTCATGCAACAACCGTACAGGTCACGTTGCAAAGATGGACCTCCGAAACCTGAATTATGATCAAGGCTTCTACGGGGAGACTTCTTTGGGGGGTAAAATTAATCCTTCTTTGCTTAGCTTTAAGAACTTATACTACCTTGACCTAAGCGGAAATGATTTTCAACGACTTCAAATTCCTAATTTCTTTGGGAAGCTTACAAGTTTGCGGTATCTTAATCTCTCCTATATTTCATATGTGGGAGAGATTCCCCCAGCTCTTGGTAACCTCTCAAACTTGAACTATCTTGACCTCAGTTCTGAATCTTCTGATTATAACAGTTTTGTTTCTTCCAAAAACTTGAATTCGCTTTCTCATCTCTCTTCCCTAAAGTATCTCAATCTTGGAGGTGTGAACCTTAGCAGCACAGGAGTAAGTTGGCTACATGATGTCAACATGCTTCCTTCACTCTTAGAGTTGCATTTGTCCTATTGCCAAATTCAAAACCTTCCACACTCCCAGCTGCCGTCAGTGAACTTCACATCCCGCCTATTAGTTCTTGATATATCACATAATGAAATTAATTCTTCATTTCCCAGCTGGTTTTTTAATCTTACCAACCTCAGAAGACTTGATGCATCTTCCAATTTGTTCGGGCCCTTCCCTGTTGAATTTGCAAACCTCAAGTCTTTAGAAGAACTCTCTTTAACAGAGAATTCTATCCAAGGTCAAATTCCCAAAGTCTTCGGTACTTTGTGCAGCCCAAGAATATTAGATCTTTCAGAGAACGCGTTCAATGGTAGTTTGGAAGAGGTTTGGAATGGTTTCTCAAACTGTGCAAGTCGTAGATTAGAGTCACTTGATTTGTCCGGCAATATGGTGGAAGGTGAACTGCCTGCCACCTTAGGAATGCTAGAAAATATGAAGGAACTTGACCTCAGTTATAACCAATTTTCTGGTTCAATTCCACAATCTATTGTTCACCTCAATCTATCTGAGAATTCGTGGGAAGGCAATCTAAATGAAGCCCATTTCCGAACTCTCACAAAGTTGGAGTCTTTGGCAGTCAGCACAGACGGACCTAGGTCCCTCATTTTTAACATGGATCATGAGTGGATTCCTCCTTTCCAACTTAATTCAGTCGACATTGCCGACTGCAGAGTAGGTCCTGCCTTTGGGGCATGGCTCAAGTCTCAAACTGAATTAACGTATGTCACGCTTCGTAATACTTCAATCTCAGATTTCATACCAGAGGAATGGTTCTTGAAGATATCTTTCCAACTCACATGGCTGGATTTATCTAACAACCAAATTCGTGGAAAGCTTCCATTTCACATCAACTTCCCGTCCCCGTCCTTGGAGAGAATAGATTTGAGTCATAATCGATTTGAGGGCCCTCTCCCACATTGTTCTAGTGATGTTGCCCAATATCTCTTTCTTGGAAGCAATTTATTTTCCTGGCCGATTCCCTCAAATTTTGATCAATTGCTGCCTAACTTGGCAGAATTGGATCTATCTGACAATCATCTGAATGGTAGTATACCACCCTCTGTGTGGAACCTGTCAGATTTGTCATTTCTTTCGTTAAGAAGCAATCCCTTGACTGGAGAATTTCCTCTAGCATGGAGTCTGTGGCCACATATATCAGTTGTAGATGTCTCAGACAACAATTTGTCTGGCAATTTCTCCAGTTCAATGGGTGTTCCAAGCTCACTAGAAGTATTGGATCTGAGCAAAAACAATTTCGGGGGTCAAATTCCTTCTTCTCTATTCCAAAACAGCAGCTGGCTGCTGAGTATTGATCTTGGAGGCAATAGATTTACTGGAAGCATACCTTTATAG

Protein Analysis

696

Amino Acids

77.59

Weight (kDa)

5.14

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 57 - 94 3.8e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 123 - 191 1.1e-07 Leucine-rich repeat region
LRR_14 PF23598 202 - 354 1.8e-09 Leucine-rich repeat region
LRR_8 PF13855 238 - 300 1.1e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34930
fragaria_vesca FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 585, 1194
AccB7I CCANNNNNTGG 1 cut(s) 530
AccI GTMKAC 2 cut(s) 1392, 1789
AccII CGCG 1 cut(s) 1040
AciI CCGC 3 cut(s) 420, 478, 796
AclWI GGATC 3 cut(s) 1362, 1767, 1983
AcoI YGGCCR 2 cut(s) 1709, 1883
AfaI GTAC 2 cut(s) 289, 1000
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 5 cut(s) 530, 1424, 1606, 1803, 1853
AflIII ACRYGT 1 cut(s) 1038
AjnI CCWGG 2 cut(s) 246, 1706
AjuI GAANNNNNNNTTGG 4 cut(s) 966, 998, 1668, 1700
AloI GAACNNNNNNTCC 2 cut(s) 776, 808
Alw26I GTCTC 4 cut(s) 172, 344, 1446, 1912
AlwI GGATC 3 cut(s) 1362, 1767, 1983
AlwNI CAGNNNCTG 1 cut(s) 2034
Aor51HI AGCGCT 1 cut(s) 186
AoxI GGCC 5 cut(s) 244, 905, 1642, 1709, 1883
ApaI GGGCCC 2 cut(s) 909, 1646
ApeKI GCWGC 6 cut(s) 672, 772, 1008, 1738, 2031, 2038
ArsI GACNNNNNNTTYG 4 cut(s) 920, 952, 1289, 1321
AseI ATTAAT 2 cut(s) 372, 831
Asp700I GAANNNNTTC 3 cut(s) 23, 1040, 1073
AspA2I CCTAGG 1 cut(s) 1331
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 9 cut(s) 244, 310, 905, 906, 1328, 1335, 1415, 1642, 1643
AsuHPI GGTGA 2 cut(s) 1148, 1223
AvaII GGWCC 4 cut(s) 310, 1328, 1335, 1415
AvrII CCTAGG 1 cut(s) 1331
AxyI CCTNAGG 1 cut(s) 1153
BaeGI GKGCMC 2 cut(s) 909, 1646
BalI TGGCCA 1 cut(s) 1885
BanII GRGCYC 2 cut(s) 909, 1646
BarI GAAGNNNNNNTAC 2 cut(s) 217, 249
BbsI GAAGAC 2 cut(s) 883, 985
BbvI GCAGC 6 cut(s) 684, 759, 1020, 1725, 2025, 2043
BccI CCATC 2 cut(s) 125, 301
BceAI ACGGC 1 cut(s) 760
BciT130I CCWGG 2 cut(s) 248, 1708
BclI TGATCA 3 cut(s) 214, 331, 1729
BcoDI GTCTC 4 cut(s) 172, 344, 1446, 1912
BfaI CTAG 5 cut(s) 1163, 1332, 1662, 1868, 1964
BfmI CTRYAG 1 cut(s) 1405
BfoI RGCGCY 1 cut(s) 188
BglI GCCNNNNNGGC 1 cut(s) 1427
BglII AGATCT 1 cut(s) 1024
BisI GCNGC 6 cut(s) 673, 773, 1009, 1739, 2032, 2039
BlnI CCTAGG 1 cut(s) 1331
BlpI GCTNAGC 1 cut(s) 386
BlsI GCNGC 6 cut(s) 674, 774, 1010, 1740, 2033, 2040
Bme1390I CCNGG 2 cut(s) 248, 1708
Bme18I GGWCC 4 cut(s) 310, 1328, 1335, 1415
BmgT120I GGNCC 9 cut(s) 244, 310, 905, 906, 1328, 1335, 1415, 1642, 1643
BmiI GGNNCC 4 cut(s) 907, 1337, 1644, 1808
BmrFI CCNGG 2 cut(s) 248, 1708
BmsI GCATC 4 cut(s) 101, 174, 874, 896
BoxI GACNNNNGTC 1 cut(s) 1333
BpiI GAAGAC 2 cut(s) 883, 985
BplI GAGNNNNNCTC 2 cut(s) 174, 206
BpmI CTGGAG 2 cut(s) 1875, 1921
Bpu10I CCTNAGC 2 cut(s) 416, 668
Bpu1102I GCTNAGC 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 917, 1421
Bsa29I ATCGAT 1 cut(s) 1633
BsaBI GATNNNNATC 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 973, 1331, 1605
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 5 cut(s) 530, 1424, 1606, 1803, 1853
Bse1I ACTGG 3 cut(s) 1858, 1938, 2077
Bse21I CCTNAGG 1 cut(s) 1153
Bse3DI GCAATG 1 cut(s) 1395
Bse8I GATNNNNATC 1 cut(s) 157
BseBI CCWGG 2 cut(s) 248, 1708
BseCI ATCGAT 1 cut(s) 1633
BseDI CCNNGG 3 cut(s) 973, 1331, 1605
BseGI GGATG 1 cut(s) 791
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 5 cut(s) 530, 1424, 1606, 1803, 1853
BseMI GCAATG 1 cut(s) 1395
BseMII CTCAG 9 cut(s) 205, 577, 886, 1201, 1236, 1500, 1923, 1970, 2033
BseNI ACTGG 3 cut(s) 1858, 1938, 2077
BseSI GKGCMC 2 cut(s) 909, 1646
BseXI GCAGC 6 cut(s) 684, 759, 1020, 1725, 2025, 2043
BseYI CCCAGC 3 cut(s) 523, 768, 845
BsgI GTGCAG 2 cut(s) 89, 1027
Bsh1236I CGCG 1 cut(s) 1040
BshFI GGCC 5 cut(s) 246, 907, 1644, 1711, 1885
BshVI ATCGAT 1 cut(s) 1633
BsiSI CCGG 2 cut(s) 222, 1119
BslFI GGGAC 2 cut(s) 1321, 1582
BslI CCNNNNNNNGG 5 cut(s) 530, 1424, 1606, 1803, 1853
BsmAI GTCTC 4 cut(s) 172, 344, 1446, 1912
BsmBI CGTCTC 1 cut(s) 172
BsmFI GGGAC 2 cut(s) 1321, 1582
BsmI GAATGC 1 cut(s) 1164
BsnI GGCC 5 cut(s) 246, 907, 1644, 1711, 1885
Bsp120I GGGCCC 2 cut(s) 905, 1642
Bsp1286I GDGCHC 2 cut(s) 909, 1646
Bsp143I GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
Bsp1720I GCTNAGC 1 cut(s) 386
BspACI CCGC 3 cut(s) 420, 478, 796
BspANI GGCC 5 cut(s) 246, 907, 1644, 1711, 1885
BspCNI CTCAG 9 cut(s) 204, 576, 885, 1200, 1237, 1499, 1922, 1971, 2034
BspDI ATCGAT 1 cut(s) 1633
BspFNI CGCG 1 cut(s) 1040
BspHI TCATGA 1 cut(s) 1357
BspLI GGNNCC 4 cut(s) 907, 1337, 1644, 1808
BspMAI CTGCAG 1 cut(s) 1409
BspPI GGATC 3 cut(s) 1362, 1767, 1983
BsrDI GCAATG 1 cut(s) 1395
BsrI ACTGG 3 cut(s) 1858, 1938, 2077
BssECI CCNNGG 3 cut(s) 973, 1331, 1605
BssMI GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
BssNAI GTATAC 1 cut(s) 1790
BssT1I CCWWGG 3 cut(s) 973, 1331, 1605
Bst1107I GTATAC 1 cut(s) 1790
Bst2UI CCWGG 2 cut(s) 248, 1708
Bst4CI ACNGT 4 cut(s) 120, 287, 590, 1085
Bst6I CTCTTC 3 cut(s) 168, 637, 1053
BstAPI GCANNNNNTGC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 1146, 2036
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 1 cut(s) 791
BstFNI CGCG 1 cut(s) 1040
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 9 cut(s) 155, 217, 334, 1027, 1357, 1732, 1762, 1978, 2053
BstMAI GTCTC 4 cut(s) 172, 344, 1446, 1912
BstMBI GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
BstMWI GCNNNNNNNGC 3 cut(s) 252, 276, 1427
BstNI CCWGG 2 cut(s) 248, 1708
BstNSI RCATGY 1 cut(s) 709
BstPAI GACNNNNGTC 1 cut(s) 1333
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 246, 1706
BstSFI CTRYAG 1 cut(s) 1405
BstSLI GKGCMC 2 cut(s) 909, 1646
BstUI CGCG 1 cut(s) 1040
BstV1I GCAGC 6 cut(s) 684, 759, 1020, 1725, 2025, 2043
BstV2I GAAGAC 2 cut(s) 883, 985
BstX2I RGATCY 3 cut(s) 1024, 1759, 1975
BstXI CCANNNNNNTGG 4 cut(s) 1205, 1506, 1565, 1945
BstYI RGATCY 3 cut(s) 1024, 1759, 1975
BstZ17I GTATAC 1 cut(s) 1790
Bsu15I ATCGAT 1 cut(s) 1633
Bsu36I CCTNAGG 1 cut(s) 1153
BsuRI GGCC 5 cut(s) 246, 907, 1644, 1711, 1885
BsuTUI ATCGAT 1 cut(s) 1633
BtsCI GGATG 1 cut(s) 791
BtsIMutI CAGTG 1 cut(s) 786
Cac8I GCNNGC 2 cut(s) 1146, 2036
CaiI CAGNNNCTG 1 cut(s) 2034
CciI TCATGA 1 cut(s) 1357
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 9 cut(s) 244, 310, 905, 906, 1328, 1335, 1415, 1642, 1643
ClaI ATCGAT 1 cut(s) 1633
Csp6I GTAC 2 cut(s) 288, 999
CviAII CATG 9 cut(s) 162, 276, 695, 706, 1351, 1358, 1431, 1536, 1872
CviQI GTAC 2 cut(s) 288, 999
DpnI GATC 9 cut(s) 154, 216, 333, 1026, 1356, 1731, 1761, 1977, 2052
DpnII GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
EaeI YGGCCR 2 cut(s) 1709, 1883
Eam1104I CTCTTC 3 cut(s) 168, 637, 1053
EarI CTCTTC 3 cut(s) 168, 637, 1053
Eco130I CCWWGG 3 cut(s) 973, 1331, 1605
Eco24I GRGCYC 2 cut(s) 909, 1646
Eco32I GATATC 1 cut(s) 1521
Eco47I GGWCC 4 cut(s) 310, 1328, 1335, 1415
Eco47III AGCGCT 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 1153
Eco91I GGTNACC 1 cut(s) 533
EcoO109I RGGNCCY 5 cut(s) 906, 1335, 1415, 1642, 1643
EcoO65I GGTNACC 1 cut(s) 533
EcoRI GAATTC 3 cut(s) 613, 964, 1249
EcoRII CCWGG 2 cut(s) 246, 1706
EcoRV GATATC 1 cut(s) 1521
EcoT14I CCWWGG 3 cut(s) 973, 1331, 1605
EcoT22I ATGCAT 2 cut(s) 167, 889
EcoT38I GRGCYC 2 cut(s) 909, 1646
ErhI CCWWGG 3 cut(s) 973, 1331, 1605
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 9 cut(s) 165, 279, 698, 709, 1354, 1361, 1434, 1539, 1875
FalI AAGNNNNNCTT 1 cut(s) 2068
FaqI GGGAC 2 cut(s) 1321, 1582
FatI CATG 9 cut(s) 161, 275, 694, 705, 1350, 1357, 1430, 1535, 1871
FauI CCCGC 1 cut(s) 803
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 3 cut(s) 214, 331, 1729
FblI GTMKAC 2 cut(s) 1392, 1789
Fnu4HI GCNGC 6 cut(s) 673, 773, 1009, 1739, 2032, 2039
FokI GGATG 1 cut(s) 778
FriOI GRGCYC 2 cut(s) 909, 1646
Fsp4HI GCNGC 6 cut(s) 673, 773, 1009, 1739, 2032, 2039
FspBI CTAG 5 cut(s) 1163, 1332, 1662, 1868, 1964
GlaI GCGC 1 cut(s) 186
GluI GCNGC 6 cut(s) 673, 773, 1009, 1739, 2032, 2039
GsaI CCCAGC 3 cut(s) 527, 772, 849
GsuI CTGGAG 2 cut(s) 1875, 1921
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 5 cut(s) 246, 907, 1644, 1711, 1885
HapII CCGG 2 cut(s) 222, 1119
HhaI GCGC 1 cut(s) 187
Hin1II CATG 9 cut(s) 165, 279, 698, 709, 1354, 1361, 1434, 1539, 1875
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 2 cut(s) 703, 1393
HindII GTYRAC 2 cut(s) 703, 1393
HindIII AAGCTT 2 cut(s) 464, 1571
HinfI GANTC 8 cut(s) 517, 572, 1103, 1304, 1366, 1624, 1714, 1876
HpaII CCGG 2 cut(s) 222, 1119
HphI GGTGA 2 cut(s) 1148, 1223
Hpy166II GTNNAC 7 cut(s) 664, 703, 784, 1139, 1231, 1393, 1790
Hpy188III TCNNGA 4 cut(s) 557, 809, 1358, 1513
Hpy8I GTNNAC 7 cut(s) 664, 703, 784, 1139, 1231, 1393, 1790
HpyAV CCTTC 8 cut(s) 387, 723, 767, 919, 1127, 1168, 1253, 2019
HpyCH4III ACNGT 4 cut(s) 120, 287, 590, 1085
HpyCH4IV ACGT 2 cut(s) 297, 1457
HpyF10VI GCNNNNNNNGC 3 cut(s) 252, 276, 1427
HpySE526I ACGT 2 cut(s) 297, 1457
Hsp92II CATG 9 cut(s) 165, 279, 698, 709, 1354, 1361, 1434, 1539, 1875
HspAI GCGC 1 cut(s) 185
Ksp22I TGATCA 3 cut(s) 214, 331, 1729
Kzo9I GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
Lsp1109I GCAGC 6 cut(s) 684, 759, 1020, 1725, 2025, 2043
LweI GCATC 4 cut(s) 101, 174, 874, 896
MaeI CTAG 5 cut(s) 1163, 1332, 1662, 1868, 1964
MaeII ACGT 2 cut(s) 297, 1457
MaeIII GTNAC 5 cut(s) 208, 293, 533, 1104, 1462
MalI GATC 9 cut(s) 154, 216, 333, 1026, 1356, 1731, 1761, 1977, 2052
MboI GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
MfeI CAATTG 1 cut(s) 1733
MflI RGATCY 3 cut(s) 1024, 1759, 1975
MhlI GDGCHC 2 cut(s) 909, 1646
MlsI TGGCCA 1 cut(s) 1885
MluI ACGCGT 1 cut(s) 1038
MluNI TGGCCA 1 cut(s) 1885
MlyI GAGTC 4 cut(s) 1112, 1313, 1633, 1885
MmeI TCCRAC 3 cut(s) 1281, 1402, 1552
Mox20I TGGCCA 1 cut(s) 1885
Mph1103I ATGCAT 2 cut(s) 167, 889
MroXI GAANNNNTTC 3 cut(s) 23, 1040, 1073
MscI TGGCCA 1 cut(s) 1885
MslI CAYNNNNRTG 2 cut(s) 160, 1779
Msp20I TGGCCA 1 cut(s) 1885
MspA1I CMGCKG 3 cut(s) 772, 849, 2034
MspI CCGG 2 cut(s) 222, 1119
MspR9I CCNGG 2 cut(s) 248, 1708
MunI CAATTG 1 cut(s) 1733
Mva1269I GAATGC 1 cut(s) 1164
MvaI CCWGG 2 cut(s) 248, 1708
MvnI CGCG 1 cut(s) 1040
MwoI GCNNNNNNNGC 3 cut(s) 252, 276, 1427
NdeI CATATG 1 cut(s) 505
NdeII GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
NlaIII CATG 9 cut(s) 165, 279, 698, 709, 1354, 1361, 1434, 1539, 1875
NlaIV GGNNCC 4 cut(s) 907, 1337, 1644, 1808
NmuCI GTSAC 3 cut(s) 293, 1104, 1462
NsiI ATGCAT 2 cut(s) 167, 889
NspI RCATGY 1 cut(s) 709
PagI TCATGA 1 cut(s) 1357
PcsI WCGNNNNNNNCGW 1 cut(s) 1398
PctI GAATGC 1 cut(s) 1164
PdmI GAANNNNTTC 3 cut(s) 23, 1040, 1073
PfeI GAWTC 4 cut(s) 517, 572, 1366, 1714
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 6 cut(s) 674, 774, 1010, 1740, 2033, 2040
PleI GAGTC 4 cut(s) 1111, 1312, 1632, 1884
PpsI GAGTC 4 cut(s) 1111, 1312, 1632, 1884
PpuMI RGGWCCY 2 cut(s) 1335, 1415
PshAI GACNNNNGTC 1 cut(s) 1333
PshBI ATTAAT 2 cut(s) 372, 831
PsiI TTATAA 2 cut(s) 585, 1194
Psp5II RGGWCCY 2 cut(s) 1335, 1415
Psp6I CCWGG 2 cut(s) 246, 1706
PspEI GGTNACC 1 cut(s) 533
PspFI CCCAGC 3 cut(s) 523, 768, 845
PspGI CCWGG 2 cut(s) 246, 1706
PspN4I GGNNCC 4 cut(s) 907, 1337, 1644, 1808
PspOMI GGGCCC 2 cut(s) 905, 1642
PspPI GGNCC 9 cut(s) 244, 310, 905, 906, 1328, 1335, 1415, 1642, 1643
PspPPI RGGWCCY 2 cut(s) 1335, 1415
PsrI GAACNNNNNNTAC 2 cut(s) 389, 421
PstI CTGCAG 1 cut(s) 1409
PstNI CAGNNNCTG 1 cut(s) 2034
PsuI RGATCY 3 cut(s) 1024, 1759, 1975
PvuII CAGCTG 3 cut(s) 772, 849, 2034
RsaI GTAC 2 cut(s) 289, 1000
RsaNI GTAC 2 cut(s) 288, 999
RseI CAYNNNNRTG 2 cut(s) 160, 1779
SalI GTCGAC 1 cut(s) 1391
SatI GCNGC 6 cut(s) 673, 773, 1009, 1739, 2032, 2039
Sau3AI GATC 9 cut(s) 152, 214, 331, 1024, 1354, 1729, 1759, 1975, 2050
Sau96I GGNCC 9 cut(s) 244, 310, 905, 906, 1328, 1335, 1415, 1642, 1643
SchI GAGTC 4 cut(s) 1112, 1313, 1633, 1885
ScrFI CCNGG 2 cut(s) 248, 1708
SduI GDGCHC 2 cut(s) 909, 1646
SfaNI GCATC 4 cut(s) 101, 174, 874, 896
SfcI CTRYAG 1 cut(s) 1405
SinI GGWCC 4 cut(s) 310, 1328, 1335, 1415
SmiMI CAYNNNNRTG 2 cut(s) 160, 1779
SmlI CTYRAG 2 cut(s) 932, 1436
SmoI CTYRAG 2 cut(s) 932, 1436
SsiI CCGC 3 cut(s) 420, 478, 796
SspI AATATT 1 cut(s) 1020
SspMI CTAG 5 cut(s) 1163, 1332, 1662, 1868, 1964
StyD4I CCNGG 2 cut(s) 246, 1706
StyI CCWWGG 3 cut(s) 973, 1331, 1605
TaaI ACNGT 4 cut(s) 120, 287, 590, 1085
TaiI ACGT 2 cut(s) 300, 1460
TaqI TCGA 3 cut(s) 168, 1392, 1633
TfiI GAWTC 4 cut(s) 517, 572, 1366, 1714
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 3 cut(s) 293, 1104, 1462
TseI GCWGC 6 cut(s) 672, 772, 1008, 1738, 2031, 2038
Tsp45I GTSAC 3 cut(s) 293, 1104, 1462
TspDTI ATGAA 8 cut(s) 87, 264, 492, 828, 840, 1187, 1287, 1483
TspGWI ACGGA 1 cut(s) 1341
TspRI CASTG 1 cut(s) 786
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 4 cut(s) 310, 1328, 1335, 1415
VspI ATTAAT 2 cut(s) 372, 831
XceI RCATGY 1 cut(s) 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 1800
XmaJI CCTAGG 1 cut(s) 1331
XmiI GTMKAC 2 cut(s) 1392, 1789
XmnI GAANNNNTTC 3 cut(s) 23, 1040, 1073
XspI CTAG 5 cut(s) 1163, 1332, 1662, 1868, 1964
Zsp2I ATGCAT 2 cut(s) 167, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.