FvH4_4g03270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000260
Physical Location & Seq
Forward (+)
2903001 .. 2904592
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03270.t1

Sequence Viewer

Length: 180 bp
ATGAATGGAAGCACGACTTGTCCGAGATTCACAAGCTCGGGGGGAGAGACGCGAGATGAGTGGGAGTGGCTTTGCACGCATTTTGAATCGGACAAGTACAAGTTACTGTGCTTGAATTTCAAGTTGGAGAGGTGTGTTGACGAATTGGGAAGTACGGCCAACTATGATGATATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.86

Weight (kDa)

4.72

Isoelectric Point (pI)

11.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 2 cut(s) 98, 154
AgsI TTSAA 3 cut(s) 86, 115, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 37
BceAI ACGGC 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 41
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 37
BspANI GGCC 1 cut(s) 158
BspFNI CGCG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 77
BstFNI CGCG 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstUI CGCG 1 cut(s) 52
BsuRI GGCC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 77
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 97, 153
CviJI RGCY 3 cut(s) 36, 70, 158
CviKI_1 RGCY 3 cut(s) 36, 70, 158
CviQI GTAC 2 cut(s) 97, 153
EaeI YGGCCR 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 37
Esp3I CGTCTC 1 cut(s) 41
FaiI YATR 2 cut(s) 165, 173
FalI AAGNNNNNCTT 1 cut(s) 33
HaeIII GGCC 1 cut(s) 158
HgaI GACGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 2 cut(s) 27, 86
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 24, 91
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 102
MluCI AATT 2 cut(s) 115, 143
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 1 cut(s) 123
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 2 cut(s) 27, 86
RsaI GTAC 2 cut(s) 98, 154
RsaNI GTAC 2 cut(s) 97, 153
SetI ASST 2 cut(s) 38, 134
Sse9I AATT 2 cut(s) 115, 143
TaaI ACNGT 1 cut(s) 108
TasI AATT 2 cut(s) 115, 143
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 27, 86
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.