MD05G1235500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000260
Physical Location & Seq
Forward (+)
36735506 .. 36738238
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1235500.v1.1.491

Sequence Viewer

Length: 927 bp
ATGCTGAAGCCGACACACACCCTACATCTATCCAAAGAATTGATCAAGATTGCATATGACTCGCGACATCGTGGAGCAGCTACCTCACAACAGCATAGCAGCGTCGCTACCAGCTGTGGTTTTGTTATTCGGTGGCATTGTCCTATGCAGTGGGAGTCTTGGGCAGAAATTCCCGAGAGGATGAAGAAACTGGTGCGGCATGAGTTGTTGGTCAATTATAATCTTGATGACATATCCCCCGAGGCCACCGCCTACTTAGAGGAGAACTTAGCAGCCCAGTATAAACGTTGGAAGTGCGAACTCCACGCGCATTTTAAGAAATGGGATGATTCAGAGATTGCTCGCCTAGAGGGTTCCCCAGTCGAGTTGTTGGAACGGCCGGAAGATTGGGAGTGGCTTTGCAAACATTTTACGGATACAAAATTTGTGAAAATTGTTGGCAAGAAAGCTCGGGAGTCAAAGACACTTTTTCACCATTCTGGTTCAATGCCCTTCTTGTATAGGGTGGATCAGAAGCTCGATCGTCGTCATGGCAAGGTTGTTCGGGGCATGGGGAAGGTGCAGGTTCGTGAGATGAGTGCCTCCTCTTCTAAAACAACCACAGAACAGGTCATCGCCCTAAAGAAGGAAGTGGCAACCCTAAAAGATAATATTGCGGCCCATAAAGCAACCTGGGATGCCCATAAAGCAGCCTGGGATGCCCATAAAGCAACCTGGGATGCAATGAAAGCTCAGATTGCAGCCCAGATTGTAGCCCAATTTTCGGCCCAGGACGAGAAGATGAGCATGATCTTACGGGCCTTACAGATGTTCGGCCTCCAAATCCCAATGCCAGCAATTGATCTTGCTCCACCTTCAACCTCTCAGCCACTTCGCCCAACCGATACCCAGCAACCTGATGCATCAAACCCAGACGACTACTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

309

Amino Acids

35.26

Weight (kDa)

8.72

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 553
AccII CGCG 2 cut(s) 64, 308
AciI CCGC 3 cut(s) 196, 249, 656
AclI AACGTT 1 cut(s) 286
AclWI GGATC 1 cut(s) 516
AcoI YGGCCR 1 cut(s) 377
AcsI RAATTY 2 cut(s) 168, 422
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 625, 763
AgsI TTSAA 2 cut(s) 486, 858
AjnI CCWGG 4 cut(s) 671, 692, 713, 768
AluBI AGCT 5 cut(s) 80, 114, 449, 517, 731
AluI AGCT 5 cut(s) 80, 114, 449, 517, 731
AlwI GGATC 1 cut(s) 516
Ama87I CYCGRG 3 cut(s) 173, 239, 450
AoxI GGCC 6 cut(s) 243, 377, 657, 765, 798, 814
ApeKI GCWGC 5 cut(s) 77, 99, 272, 689, 740
ApoI RAATTY 2 cut(s) 168, 422
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 3 cut(s) 658, 766, 798
AsuHPI GGTGA 1 cut(s) 464
AvaI CYCGRG 3 cut(s) 173, 239, 450
BbvI GCAGC 5 cut(s) 89, 111, 284, 701, 752
BceAI ACGGC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 4 cut(s) 673, 694, 715, 770
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 42
BfaI CTAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 553
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 7 cut(s) 78, 100, 197, 273, 657, 690, 741
BlsI GCNGC 7 cut(s) 79, 101, 198, 274, 658, 691, 742
Bme1390I CCNGG 4 cut(s) 673, 694, 715, 770
BmeT110I CYCGRG 3 cut(s) 173, 239, 450
BmgT120I GGNCC 3 cut(s) 658, 766, 798
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 4 cut(s) 673, 694, 715, 770
BmrI ACTGGG 2 cut(s) 271, 353
BmsI GCATC 5 cut(s) 667, 688, 709, 889, 911
BmuI ACTGGG 2 cut(s) 271, 353
BsaJI CCNNGG 5 cut(s) 240, 672, 693, 714, 768
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 763
Bse1I ACTGG 3 cut(s) 195, 277, 359
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 4 cut(s) 673, 694, 715, 770
BseDI CCNNGG 5 cut(s) 240, 672, 693, 714, 768
BseGI GGATG 5 cut(s) 186, 331, 682, 703, 724
BseLI CCNNNNNNNGG 2 cut(s) 625, 763
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 2 cut(s) 746, 878
BseNI ACTGG 3 cut(s) 195, 277, 359
BseRI GAGGAG 2 cut(s) 275, 574
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 5 cut(s) 89, 111, 284, 701, 752
BseYI CCCAGC 1 cut(s) 888
BsgI GTGCAG 1 cut(s) 581
Bsh1236I CGCG 2 cut(s) 64, 308
Bsh1285I CGRYCG 2 cut(s) 380, 523
BshFI GGCC 6 cut(s) 245, 379, 659, 767, 800, 816
BsiEI CGRYCG 2 cut(s) 380, 523
BsiHKCI CYCGRG 3 cut(s) 173, 239, 450
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 625, 763
BsnI GGCC 6 cut(s) 245, 379, 659, 767, 800, 816
BsoBI CYCGRG 3 cut(s) 173, 239, 450
Bsp143I GATC 5 cut(s) 42, 508, 520, 789, 841
Bsp68I TCGCGA 1 cut(s) 64
BspACI CCGC 3 cut(s) 196, 249, 656
BspANI GGCC 6 cut(s) 245, 379, 659, 767, 800, 816
BspCNI CTCAG 2 cut(s) 745, 877
BspFNI CGCG 2 cut(s) 64, 308
BspLI GGNNCC 1 cut(s) 355
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 1 cut(s) 516
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 3 cut(s) 195, 277, 359
BssECI CCNNGG 5 cut(s) 240, 672, 693, 714, 768
BssMI GATC 5 cut(s) 42, 508, 520, 789, 841
Bst2UI CCWGG 4 cut(s) 673, 694, 715, 770
Bst6I CTCTTC 1 cut(s) 592
BstC8I GCNNGC 2 cut(s) 343, 834
BstDEI CTNAG 4 cut(s) 256, 268, 732, 864
BstENI CCTNNNNNAGG 1 cut(s) 623
BstF5I GGATG 5 cut(s) 186, 331, 682, 703, 724
BstFNI CGCG 2 cut(s) 64, 308
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 5 cut(s) 45, 511, 523, 792, 844
BstMBI GATC 5 cut(s) 42, 508, 520, 789, 841
BstMCI CGRYCG 2 cut(s) 380, 523
BstMWI GCNNNNNNNGC 6 cut(s) 665, 686, 698, 707, 728, 737
BstNI CCWGG 4 cut(s) 673, 694, 715, 770
BstSCI CCNGG 4 cut(s) 671, 692, 713, 768
BstUI CGCG 2 cut(s) 64, 308
BstV1I GCAGC 5 cut(s) 89, 111, 284, 701, 752
BstZI CGGCCG 1 cut(s) 377
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 6 cut(s) 245, 379, 659, 767, 800, 816
BtgZI GCGATG 1 cut(s) 598
BtsCI GGATG 5 cut(s) 186, 331, 682, 703, 724
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 155
BtuMI TCGCGA 1 cut(s) 64
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 2 cut(s) 343, 834
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 658, 766, 798
CseI GACGC 1 cut(s) 91
CviAII CATG 4 cut(s) 200, 530, 550, 787
DdeI CTNAG 4 cut(s) 256, 268, 732, 864
DpnI GATC 5 cut(s) 44, 510, 522, 791, 843
DpnII GATC 5 cut(s) 42, 508, 520, 789, 841
EaeI YGGCCR 1 cut(s) 377
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 377
Eco52I CGGCCG 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 26
Eco88I CYCGRG 3 cut(s) 173, 239, 450
EcoNI CCTNNNNNAGG 1 cut(s) 623
EcoRII CCWGG 4 cut(s) 671, 692, 713, 768
EcoT22I ATGCAT 1 cut(s) 904
FaeI CATG 4 cut(s) 203, 533, 553, 790
FatI CATG 4 cut(s) 199, 529, 549, 786
FauNDI CATATG 1 cut(s) 55
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 7 cut(s) 78, 100, 197, 273, 657, 690, 741
FokI GGATG 5 cut(s) 193, 338, 689, 710, 731
Fsp4HI GCNGC 7 cut(s) 78, 100, 197, 273, 657, 690, 741
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 309
GluI GCNGC 7 cut(s) 78, 100, 197, 273, 657, 690, 741
GsaI CCCAGC 1 cut(s) 892
HaeIII GGCC 6 cut(s) 245, 379, 659, 767, 800, 816
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 310
Hin1II CATG 4 cut(s) 203, 533, 553, 790
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 4 cut(s) 59, 155, 329, 455
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 3 cut(s) 334, 513, 735
Hpy188III TCNNGA 6 cut(s) 46, 63, 173, 224, 452, 569
Hpy99I CGWCG 2 cut(s) 107, 528
HpyAV CCTTC 4 cut(s) 502, 550, 619, 864
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 7 cut(s) 53, 148, 402, 562, 722, 740, 902
HpyF10VI GCNNNNNNNGC 6 cut(s) 665, 686, 698, 707, 728, 737
HpyF3I CTNAG 4 cut(s) 256, 268, 732, 864
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 4 cut(s) 203, 533, 553, 790
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 5 cut(s) 42, 508, 520, 789, 841
LmnI GCTCC 2 cut(s) 74, 853
Lsp1109I GCAGC 5 cut(s) 89, 111, 284, 701, 752
LweI GCATC 5 cut(s) 667, 688, 709, 889, 911
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 286
MalI GATC 5 cut(s) 44, 510, 522, 791, 843
MboI GATC 5 cut(s) 42, 508, 520, 789, 841
MboII GAAGA 4 cut(s) 196, 395, 579, 790
MfeI CAATTG 1 cut(s) 837
MluCI AATT 7 cut(s) 38, 168, 214, 422, 432, 758, 837
MlyI GAGTC 3 cut(s) 53, 164, 464
MmeI TCCRAC 2 cut(s) 269, 351
MnlI CCTC 9 cut(s) 94, 171, 235, 253, 343, 592, 595, 827, 871
Mph1103I ATGCAT 1 cut(s) 904
MseI TTAA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 4 cut(s) 673, 694, 715, 770
MunI CAATTG 1 cut(s) 837
MvaI CCWGG 4 cut(s) 673, 694, 715, 770
MvnI CGCG 2 cut(s) 64, 308
MwoI GCNNNNNNNGC 6 cut(s) 665, 686, 698, 707, 728, 737
NdeI CATATG 1 cut(s) 55
NdeII GATC 5 cut(s) 42, 508, 520, 789, 841
NlaIII CATG 4 cut(s) 203, 533, 553, 790
NlaIV GGNNCC 1 cut(s) 355
NruI TCGCGA 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 904
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 7 cut(s) 79, 101, 198, 274, 658, 691, 742
Ple19I CGATCG 1 cut(s) 523
PleI GAGTC 3 cut(s) 53, 163, 463
PpsI GAGTC 3 cut(s) 53, 163, 463
PsiI TTATAA 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 4 cut(s) 671, 692, 713, 768
PspFI CCCAGC 1 cut(s) 888
PspGI CCWGG 4 cut(s) 671, 692, 713, 768
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 3 cut(s) 658, 766, 798
PvuI CGATCG 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 114
RruI TCGCGA 1 cut(s) 64
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 7 cut(s) 78, 100, 197, 273, 657, 690, 741
Sau3AI GATC 5 cut(s) 42, 508, 520, 789, 841
Sau96I GGNCC 3 cut(s) 658, 766, 798
SchI GAGTC 3 cut(s) 53, 164, 464
ScrFI CCNGG 4 cut(s) 673, 694, 715, 770
SfaNI GCATC 5 cut(s) 667, 688, 709, 889, 911
Sse9I AATT 7 cut(s) 38, 168, 214, 422, 432, 758, 837
SsiI CCGC 3 cut(s) 196, 249, 656
SspI AATATT 1 cut(s) 652
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 4 cut(s) 671, 692, 713, 768
TaiI ACGT 1 cut(s) 289
TaqI TCGA 2 cut(s) 363, 519
TasI AATT 7 cut(s) 38, 168, 214, 422, 432, 758, 837
TauI GCSGC 2 cut(s) 199, 659
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 155
TseI GCWGC 5 cut(s) 77, 99, 272, 689, 740
TspDTI ATGAA 2 cut(s) 197, 740
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 155
XagI CCTNNNNNAGG 1 cut(s) 623
XapI RAATTY 2 cut(s) 168, 422
XspI CTAG 1 cut(s) 347
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.