MD11G1004200.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000260
Physical Location & Seq
Forward (+)
369788 .. 370902
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1004200.v1.1.491

Sequence Viewer

Length: 582 bp
ATGTTCGCGTACCTCAATCGGCTCTTCTCTGAACGCTACAAGCAGTGGAAGAGTGACCTGCACCAATGTTTCCAGCAATTTGATGATCCGCAGGTCGCTCTCGAGGAGGGTTGTCCGAAGGAGTTGGAGGACCGACAAGATAGTTGGGTTTGGCTTTGCGGTCATTTTCAGGAGTCGGGCTATGTGAAGAAGGCGAAGGTGAACAAGATCAATCGGGAGAAGAAGACTCTTCTCCACCATTTAGGTTCAAGGCCTTTCTCTTATAGGATGGAGGCACAACGGAAGGAGGGTTCAAAATTTCCAAATATCGACGTCCTTGCTGACGTTTATGTTCGGCCTGGGAATGAGTTGACCGAGTCCCTTCATGTGACTATGGTGGAGAAGAGTCAGTCGGTACTTCAAGAGTCCGCCTCCCAGCTTCCCTCGGACACGCCGATTGAGTTTGTGGATCCCCCTGAGGATGCAGGGTTTCACATCGTGATAGAGACATTGGACCAGACTTTAGGACGGAGGCCAAGGACTTATTGTTGGGGGATGGGAAATGCCAGGCGGCGGAAGAGTAGAGCCTCGTCATCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

194

Amino Acids

22.41

Weight (kDa)

7.7

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
Acc36I ACCTGC 2 cut(s) 66, 82
AccII CGCG 1 cut(s) 8
AciI CCGC 5 cut(s) 89, 159, 408, 550, 553
AclWI GGATC 3 cut(s) 80, 443, 456
AcsI RAATTY 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 2 cut(s) 11, 396
AfiI CCNNNNNNNGG 1 cut(s) 552
AgsI TTSAA 3 cut(s) 249, 294, 401
AjnI CCWGG 2 cut(s) 337, 545
AloI GAACNNNNNNTCC 2 cut(s) 274, 306
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 3 cut(s) 80, 443, 456
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 3 cut(s) 251, 335, 512
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 130, 493
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 130, 493
AxyI CCTNAGG 1 cut(s) 456
BamHI GGATCC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 230
BccI CCATC 2 cut(s) 262, 529
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 2 cut(s) 339, 547
BcoDI GTCTC 1 cut(s) 479
BfuAI ACCTGC 2 cut(s) 66, 82
BisI GCNGC 1 cut(s) 551
BlsI GCNGC 1 cut(s) 552
Bme1390I CCNGG 2 cut(s) 339, 547
Bme18I GGWCC 2 cut(s) 130, 493
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 130, 493
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 2 cut(s) 339, 547
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 338, 423, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 552
Bse21I CCTNAGG 1 cut(s) 456
BseBI CCWGG 2 cut(s) 339, 547
BseDI CCNNGG 3 cut(s) 338, 423, 515
BseGI GGATG 4 cut(s) 273, 466, 540, 572
BseLI CCNNNNNNNGG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 414
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 3 cut(s) 253, 337, 514
BsiHKCI CYCGRG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 552
BsmAI GTCTC 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 3 cut(s) 253, 337, 514
BsoBI CYCGRG 1 cut(s) 101
Bsp143I GATC 3 cut(s) 85, 207, 448
BspACI CCGC 5 cut(s) 89, 159, 408, 550, 553
BspANI GGCC 3 cut(s) 253, 337, 514
BspCNI CTCAG 1 cut(s) 448
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 450
BspMI ACCTGC 2 cut(s) 66, 82
BspPI GGATC 3 cut(s) 80, 443, 456
BspQI GCTCTTC 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 338, 423, 515
BssMI GATC 3 cut(s) 85, 207, 448
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 515
Bst2UI CCWGG 2 cut(s) 339, 547
Bst6I CTCTTC 5 cut(s) 29, 44, 234, 377, 551
BstACI GRCGYC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 456
BstF5I GGATG 4 cut(s) 273, 466, 540, 572
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 3 cut(s) 88, 210, 451
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 3 cut(s) 85, 207, 448
BstNI CCWGG 2 cut(s) 339, 547
BstSCI CCNGG 2 cut(s) 337, 545
BstUI CGCG 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 3 cut(s) 253, 337, 514
BtsCI GGATG 4 cut(s) 273, 466, 540, 572
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 1 cut(s) 50
BveI ACCTGC 2 cut(s) 66, 82
Cfr13I GGNCC 2 cut(s) 130, 493
Csp6I GTAC 2 cut(s) 10, 395
CviAII CATG 1 cut(s) 365
CviJI RGCY 8 cut(s) 22, 154, 180, 253, 337, 418, 514, 566
CviKI_1 RGCY 8 cut(s) 22, 154, 180, 253, 337, 418, 514, 566
CviQI GTAC 2 cut(s) 10, 395
DdeI CTNAG 1 cut(s) 456
DpnI GATC 3 cut(s) 87, 209, 450
DpnII GATC 3 cut(s) 85, 207, 448
DraIII CACNNNGTG 1 cut(s) 478
Eam1104I CTCTTC 5 cut(s) 29, 44, 234, 377, 551
EarI CTCTTC 5 cut(s) 29, 44, 234, 377, 551
EciI GGCGGA 2 cut(s) 397, 568
Eco130I CCWWGG 1 cut(s) 515
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 130, 493
Eco81I CCTNAGG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 337, 545
EcoT14I CCWWGG 1 cut(s) 515
ErhI CCWWGG 1 cut(s) 515
FaeI CATG 1 cut(s) 368
FaiI YATR 5 cut(s) 183, 264, 330, 366, 374
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 551
FokI GGATG 4 cut(s) 280, 473, 547, 559
Fsp4HI GCNGC 1 cut(s) 551
GluI GCNGC 1 cut(s) 551
GsaI CCCAGC 1 cut(s) 418
HaeIII GGCC 3 cut(s) 253, 337, 514
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 1 cut(s) 368
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HinfI GANTC 5 cut(s) 173, 226, 356, 385, 404
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 202, 351
Hpy188I TCNGA 3 cut(s) 31, 117, 427
Hpy188III TCNNGA 5 cut(s) 101, 170, 215, 401, 478
Hpy8I GTNNAC 2 cut(s) 202, 351
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 5 cut(s) 112, 184, 190, 277, 371
HpyCH4IV ACGT 2 cut(s) 312, 324
HpyCH4V TGCA 2 cut(s) 61, 464
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 2 cut(s) 312, 324
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 1 cut(s) 368
Kzo9I GATC 3 cut(s) 85, 207, 448
LguI GCTCTTC 1 cut(s) 29
LweI GCATC 1 cut(s) 451
MaeII ACGT 2 cut(s) 312, 324
MaeIII GTNAC 2 cut(s) 53, 367
MalI GATC 3 cut(s) 87, 209, 450
MboI GATC 3 cut(s) 85, 207, 448
MboII GAAGA 8 cut(s) 16, 61, 199, 221, 232, 235, 394, 568
MflI RGATCY 1 cut(s) 448
MluCI AATT 2 cut(s) 77, 296
MlyI GAGTC 5 cut(s) 182, 220, 365, 394, 413
MmeI TCCRAC 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 339, 547
MvaI CCWGG 2 cut(s) 339, 547
MvnI CGCG 1 cut(s) 8
NdeII GATC 3 cut(s) 85, 207, 448
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 2 cut(s) 53, 367
PaeR7I CTCGAG 1 cut(s) 101
PceI AGGCCT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PflFI GACNNNGTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 552
PleI GAGTC 5 cut(s) 181, 220, 364, 393, 412
PpsI GAGTC 5 cut(s) 181, 220, 364, 393, 412
Psp6I CCWGG 2 cut(s) 337, 545
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 2 cut(s) 337, 545
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 2 cut(s) 130, 493
PsuI RGATCY 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 355
RsaI GTAC 2 cut(s) 11, 396
RsaNI GTAC 2 cut(s) 10, 395
SapI GCTCTTC 1 cut(s) 29
SatI GCNGC 1 cut(s) 551
Sau3AI GATC 3 cut(s) 85, 207, 448
Sau96I GGNCC 2 cut(s) 130, 493
SchI GAGTC 5 cut(s) 182, 220, 365, 394, 413
ScrFI CCNGG 2 cut(s) 339, 547
SetI ASST 8 cut(s) 15, 60, 96, 201, 247, 315, 327, 420
SfaNI GCATC 1 cut(s) 451
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 2 cut(s) 130, 493
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 2 cut(s) 77, 296
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 5 cut(s) 89, 159, 408, 550, 553
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 337, 545
StyI CCWWGG 1 cut(s) 515
TaiI ACGT 2 cut(s) 315, 327
TaqI TCGA 2 cut(s) 102, 309
TaqII GACCGA 2 cut(s) 147, 368
TasI AATT 2 cut(s) 77, 296
TauI GCSGC 1 cut(s) 553
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 2 cut(s) 53, 367
Tsp45I GTSAC 2 cut(s) 53, 367
TspDTI ATGAA 1 cut(s) 353
TspGWI ACGGA 2 cut(s) 295, 523
TspRI CASTG 1 cut(s) 50
Tth111I GACNNNGTC 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 130, 493
XapI RAATTY 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 101
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.