Rorug01G0468000

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
56033127 .. 56034768
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0468000.1

Sequence Viewer

Length: 663 bp
ATGGCTTGTATACGAAATGGCAGAAATGCCCTTCGTCAGATCATCAGAGACACTCACAACGTCGTCCATTCTTCCGAGTCGGAGCGCATGATGAATCCTCTGGTTTTCGCTTGCCAAGGAGTTCGGCATAGGAAATTGGAAGTGATTTTGACGACGAATGTGGATAAGCTCGGCAAGGCCGGTGAGACTGTGAAGGTTGCGCCGGGGCATTTCCGCAACCACTTGATGCCGAAATTGCTTGCTGTACCCAACATTGACAAGTATGCCTATCTCATAAGACAGCAGCGAAAGAATGCTCCGCTGGAAGAAGAAGAGGAGAAGGAGGAGGTTAAAGTGGTTACTGTGTCCGAGGAAGTTAAGATGAAAGAATATGAAAAGGCAGCGAAGCGTCTGGATAATGCTCGTTTGGTATTGCGGAGGAACATTAATCTTGAAAAGTTCAGGACACGTGCAACAAAGGAAGACCCTATAGAATTGCATTCTACTGTGACCAAGGAGGATATTGTGGCTGAGGTGGCAAGGCAGCTTTCTATAGGCTTAGAACCTGAGAACGTGCATCTACCATCTCCATTGTCAACTGTAGGAGAGTATGAGGTACCACTGCGCCTTCCGAGATCCATCCCTTTGCCGGCAGGGAAGGCCATCAAAACTGGACCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

220

Amino Acids

25.01

Weight (kDa)

9.39

Isoelectric Point (pI)

57.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L9_N PF01281 47 - 83 6.3e-13 Ribosomal protein L9, N-terminal domain
Ribosomal_L9_C PF03948 149 - 206 3.1e-07 Ribosomal protein L9, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 10
AciI CCGC 3 cut(s) 214, 299, 415
AclWI GGATC 1 cut(s) 609
AcvI CACGTG 1 cut(s) 449
AfaI GTAC 3 cut(s) 246, 597, 659
AfiI CCNNNNNNNGG 1 cut(s) 628
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 1 cut(s) 434
AluBI AGCT 2 cut(s) 169, 526
AluI AGCT 2 cut(s) 169, 526
Alw26I GTCTC 2 cut(s) 42, 179
AlwI GGATC 1 cut(s) 609
AoxI GGCC 2 cut(s) 177, 639
ApeKI GCWGC 3 cut(s) 283, 380, 523
AseI ATTAAT 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 595
AspLEI GCGC 3 cut(s) 87, 202, 606
AspS9I GGNCC 1 cut(s) 653
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 653
BanI GGYRCC 1 cut(s) 595
BbrPI CACGTG 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 295, 392, 535
BccI CCATC 3 cut(s) 571, 626, 650
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 42, 179
BfaI CTAG 1 cut(s) 661
BfmI CTRYAG 3 cut(s) 468, 531, 579
BisI GCNGC 3 cut(s) 284, 381, 524
BlsI GCNGC 3 cut(s) 285, 382, 525
Bme1390I CCNGG 1 cut(s) 204
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 216, 565
BpiI GAAGAC 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 449
BsaJI CCNNGG 4 cut(s) 115, 203, 348, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 628
Bse118I RCCGGY 2 cut(s) 179, 628
Bse1I ACTGG 1 cut(s) 655
BseDI CCNNGG 4 cut(s) 115, 203, 348, 492
BseGI GGATG 1 cut(s) 618
BseLI CCNNNNNNNGG 1 cut(s) 628
BseMII CTCAG 2 cut(s) 501, 537
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 2 cut(s) 329, 338
BseXI GCAGC 3 cut(s) 295, 392, 535
BshFI GGCC 2 cut(s) 179, 641
BshNI GGYRCC 1 cut(s) 595
BsiSI CCGG 3 cut(s) 180, 203, 629
BslI CCNNNNNNNGG 1 cut(s) 628
BsmAI GTCTC 2 cut(s) 42, 179
BsmI GAATGC 2 cut(s) 298, 478
BsnI GGCC 2 cut(s) 179, 641
Bsp143I GATC 2 cut(s) 39, 614
BspACI CCGC 3 cut(s) 214, 299, 415
BspANI GGCC 2 cut(s) 179, 641
BspCNI CTCAG 2 cut(s) 502, 538
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 595
BsrFI RCCGGY 2 cut(s) 179, 628
BsrI ACTGG 1 cut(s) 655
BssAI RCCGGY 2 cut(s) 179, 628
BssECI CCNNGG 4 cut(s) 115, 203, 348, 492
BssMI GATC 2 cut(s) 39, 614
BssNAI GTATAC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 115, 492
Bst1107I GTATAC 1 cut(s) 11
Bst4CI ACNGT 5 cut(s) 190, 343, 487, 580, 657
Bst6I CTCTTC 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 112, 240, 630
BstDEI CTNAG 3 cut(s) 510, 538, 546
BstF5I GGATG 1 cut(s) 618
BstHHI GCGC 3 cut(s) 87, 202, 606
BstKTI GATC 2 cut(s) 42, 617
BstMAI GTCTC 2 cut(s) 42, 179
BstMBI GATC 2 cut(s) 39, 614
BstMWI GCNNNNNNNGC 3 cut(s) 235, 515, 638
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 3 cut(s) 468, 531, 579
BstV1I GCAGC 3 cut(s) 295, 392, 535
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BstZ17I GTATAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 179, 641
BtsCI GGATG 1 cut(s) 618
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 599
Cac8I GCNNGC 3 cut(s) 112, 240, 630
CfoI GCGC 3 cut(s) 87, 202, 606
Cfr10I RCCGGY 2 cut(s) 179, 628
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 245, 596, 658
CviAII CATG 1 cut(s) 88
CviJI RGCY 7 cut(s) 5, 169, 179, 509, 526, 537, 641
CviKI_1 RGCY 7 cut(s) 5, 169, 179, 509, 526, 537, 641
CviQI GTAC 3 cut(s) 245, 596, 658
DdeI CTNAG 3 cut(s) 510, 538, 546
DpnI GATC 2 cut(s) 41, 616
DpnII GATC 2 cut(s) 39, 614
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 115, 492
Eco47I GGWCC 1 cut(s) 653
Eco72I CACGTG 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 115, 492
ErhI CCWWGG 2 cut(s) 115, 492
FaeI CATG 1 cut(s) 91
FaiI YATR 9 cut(s) 11, 89, 129, 264, 275, 372, 470, 533, 591
FatI CATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 284, 381, 524
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 3 cut(s) 284, 381, 524
FspBI CTAG 1 cut(s) 661
GlaI GCGC 3 cut(s) 86, 201, 605
GluI GCNGC 3 cut(s) 284, 381, 524
HaeIII GGCC 2 cut(s) 179, 641
HapII CCGG 3 cut(s) 180, 203, 629
HgaI GACGC 1 cut(s) 377
HhaI GCGC 3 cut(s) 87, 202, 606
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 3 cut(s) 85, 200, 604
HinP1I GCGC 3 cut(s) 85, 200, 604
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 2 cut(s) 77, 94
HpaII CCGG 3 cut(s) 180, 203, 629
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 11, 576
Hpy188I TCNGA 6 cut(s) 39, 47, 76, 82, 349, 612
Hpy188III TCNNGA 3 cut(s) 392, 431, 442
Hpy8I GTNNAC 2 cut(s) 11, 576
Hpy99I CGWCG 2 cut(s) 65, 157
HpyAV CCTTC 5 cut(s) 41, 187, 313, 617, 631
HpyCH4III ACNGT 5 cut(s) 190, 343, 487, 580, 657
HpyCH4IV ACGT 3 cut(s) 60, 448, 552
HpyCH4V TGCA 3 cut(s) 452, 478, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 235, 515, 638
HpyF3I CTNAG 3 cut(s) 510, 538, 546
HpySE526I ACGT 3 cut(s) 60, 448, 552
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 3 cut(s) 85, 200, 604
KpnI GGTACC 1 cut(s) 599
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 2 cut(s) 39, 614
LmnI GCTCC 2 cut(s) 82, 301
Lsp1109I GCAGC 3 cut(s) 295, 392, 535
LweI GCATC 2 cut(s) 216, 565
MaeI CTAG 1 cut(s) 661
MaeII ACGT 3 cut(s) 60, 448, 552
MaeIII GTNAC 2 cut(s) 337, 487
MalI GATC 2 cut(s) 41, 616
MboI GATC 2 cut(s) 39, 614
MboII GAAGA 5 cut(s) 63, 317, 320, 323, 473
MflI RGATCY 1 cut(s) 614
MluCI AATT 3 cut(s) 134, 233, 473
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 9 cut(s) 108, 307, 316, 319, 343, 411, 490, 505, 586
MroNI GCCGGC 1 cut(s) 628
MseI TTAA 3 cut(s) 330, 357, 426
MspA1I CMGCKG 1 cut(s) 301
MspI CCGG 3 cut(s) 180, 203, 629
MspR9I CCNGG 1 cut(s) 204
Mva1269I GAATGC 2 cut(s) 298, 478
MwoI GCNNNNNNNGC 3 cut(s) 235, 515, 638
NaeI GCCGGC 1 cut(s) 630
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 39, 614
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 597
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 487
PctI GAATGC 2 cut(s) 298, 478
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 3 cut(s) 285, 382, 525
PleI GAGTC 1 cut(s) 85
PmaCI CACGTG 1 cut(s) 449
PmlI CACGTG 1 cut(s) 449
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 426
PspCI CACGTG 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 1 cut(s) 653
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 3 cut(s) 246, 597, 659
RsaNI GTAC 3 cut(s) 245, 596, 658
SaqAI TTAA 3 cut(s) 330, 357, 426
SatI GCNGC 3 cut(s) 284, 381, 524
Sau3AI GATC 2 cut(s) 39, 614
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 204
SfaNI GCATC 2 cut(s) 216, 565
SfcI CTRYAG 3 cut(s) 468, 531, 579
SinI GGWCC 1 cut(s) 653
Sse9I AATT 3 cut(s) 134, 233, 473
SsiI CCGC 3 cut(s) 214, 299, 415
SspMI CTAG 1 cut(s) 661
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 2 cut(s) 115, 492
TaaI ACNGT 5 cut(s) 190, 343, 487, 580, 657
TaiI ACGT 3 cut(s) 63, 451, 555
TasI AATT 3 cut(s) 134, 233, 473
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 330, 357, 426
Tru9I TTAA 3 cut(s) 330, 357, 426
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 3 cut(s) 283, 380, 523
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 3 cut(s) 107, 377, 387
TspRI CASTG 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 653
VspI ATTAAT 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 10
XspI CTAG 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.