MD03G1095500.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000260
Physical Location & Seq
Reverse (-)
8106711 .. 8107696
986 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1095500.v1.1.491

Sequence Viewer

Length: 303 bp
ATGACAGAGCAGCTTCATTCCACCATGGTGGAGAAGGGCTACACCGTTATGGAGGAGGTGGCTTCCCAGCTTCCTGTAGAAACCCTGATTGAGGAGGTGCTTCCCCCTGAGGATGCTGGTTTTCAGATCATGACAAACACACTTGATCAGACCCTCGATCATCGGACTAGGAATGTTCACCAGGGGCTTGTGAAAGCTCGCTTTCGGGACCTATCTGCCTTATCCTCCAGGCAAAGAACAGAAGCGGTCGAAACATTGACATCTAAAGTGGCGGACCTGAAGCAGCAGATTGCTACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

5.08

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 245, 272
AcuI CTGAAG 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 91
AjnI CCWGG 2 cut(s) 180, 227
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 3 cut(s) 13, 70, 197
AluI AGCT 3 cut(s) 13, 70, 197
ApeKI GCWGC 2 cut(s) 10, 283
AspS9I GGNCC 2 cut(s) 208, 274
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 2 cut(s) 208, 274
AxyI CCTNAGG 1 cut(s) 108
BbvI GCAGC 2 cut(s) 22, 295
BciT130I CCWGG 2 cut(s) 182, 229
BclI TGATCA 1 cut(s) 145
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 11, 284
BlsI GCNGC 2 cut(s) 12, 285
Bme1390I CCNGG 2 cut(s) 182, 229
Bme18I GGWCC 2 cut(s) 208, 274
BmgT120I GGNCC 2 cut(s) 208, 274
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 182, 229
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 211
BsaJI CCNNGG 2 cut(s) 24, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 298
Bse21I CCTNAGG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 182, 229
BseDI CCNNGG 2 cut(s) 24, 181
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 68, 107
BseXI GCAGC 2 cut(s) 22, 295
BseYI CCCAGC 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 249
BsiEI CGRYCG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 221
Bsp143I GATC 3 cut(s) 126, 145, 157
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 2 cut(s) 245, 272
BspCNI CTCAG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 24, 181
BssMI GATC 3 cut(s) 126, 145, 157
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 182, 229
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 3 cut(s) 129, 148, 160
BstMBI GATC 3 cut(s) 126, 145, 157
BstMCI CGRYCG 1 cut(s) 249
BstNI CCWGG 2 cut(s) 182, 229
BstSCI CCNGG 2 cut(s) 180, 227
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 22, 295
BstXI CCANNNNNNTGG 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 199
CciI TCATGA 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 208, 274
CviAII CATG 2 cut(s) 25, 130
CviJI RGCY 6 cut(s) 13, 39, 62, 70, 187, 197
CviKI_1 RGCY 6 cut(s) 13, 39, 62, 70, 187, 197
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 128, 147, 159
DpnII GATC 3 cut(s) 126, 145, 157
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 208, 274
Eco57I CTGAAG 1 cut(s) 299
Eco81I CCTNAGG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 180, 227
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 28, 133
FaiI YATR 3 cut(s) 26, 50, 131
FaqI GGGAC 1 cut(s) 221
FatI CATG 2 cut(s) 24, 129
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 11, 284
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 11, 284
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 11, 284
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 211
Hin1II CATG 2 cut(s) 28, 133
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 126, 150, 165
Hpy188III TCNNGA 2 cut(s) 130, 206
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 46
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 2 cut(s) 28, 133
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 126, 145, 157
Lsp1109I GCAGC 2 cut(s) 22, 295
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 168
MalI GATC 3 cut(s) 128, 147, 159
MboI GATC 3 cut(s) 126, 145, 157
MnlI CCTC 7 cut(s) 46, 49, 85, 88, 103, 164, 235
MslI CAYNNNNRTG 2 cut(s) 26, 47
MspR9I CCNGG 2 cut(s) 182, 229
MvaI CCWGG 2 cut(s) 182, 229
NcoI CCATGG 1 cut(s) 24
NdeII GATC 3 cut(s) 126, 145, 157
NlaIII CATG 2 cut(s) 28, 133
NlaIV GGNNCC 1 cut(s) 209
OliI CACNNNNGTG 1 cut(s) 26
PagI TCATGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 12, 285
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 180, 227
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 2 cut(s) 180, 227
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 2 cut(s) 208, 274
PspPPI RGGWCCY 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 26, 47
SatI GCNGC 2 cut(s) 11, 284
Sau3AI GATC 3 cut(s) 126, 145, 157
Sau96I GGNCC 2 cut(s) 208, 274
ScrFI CCNGG 2 cut(s) 182, 229
SetI ASST 7 cut(s) 15, 60, 72, 99, 199, 213, 279
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 2 cut(s) 208, 274
SmiMI CAYNNNNRTG 2 cut(s) 26, 47
SsiI CCGC 2 cut(s) 245, 272
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 180, 227
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 156, 249
TseI GCWGC 2 cut(s) 10, 283
TspDTI ATGAA 1 cut(s) 5
VpaK11BI GGWCC 2 cut(s) 208, 274
XagI CCTNNNNNAGG 1 cut(s) 89
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.