MD04G1102500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000260
Physical Location & Seq
Forward (+)
18938248 .. 18940666
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1102500.v1.1.491

Sequence Viewer

Length: 258 bp
ATGACTTCTACACCTAGTCCGACGACTACACCTACTACTGTCGCCACTGCTCTGGCAGGGATGGACCATAGGCCGGTCAATCCGATTGACCCAGTTGGTCCTCTAGTCCCACATGTGCAGGGATCATCGACTTCTTCGGTGGCGCTACTTGCTAGCGCCCGACTTACTCACCGACGCCCCCGCACTCCAGACCAGATGTCGCCATCAGGATCCACAACCGATGGATTGAGTACACGGTCAGCGAAGAAAGACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

8.76

Weight (kDa)

10.74

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 3 cut(s) 130, 204, 217
AcyI GRCGYC 1 cut(s) 175
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 73
AflIII ACRYGT 1 cut(s) 112
AhdI GACNNNNNGTC 1 cut(s) 196
AlwI GGATC 3 cut(s) 130, 204, 217
AoxI GGCC 1 cut(s) 71
AspLEI GCGC 2 cut(s) 145, 158
AspS9I GGNCC 2 cut(s) 64, 98
AsuHPI GGTGA 1 cut(s) 161
AsuNHI GCTAGC 1 cut(s) 152
AvaII GGWCC 2 cut(s) 64, 98
BamHI GGATCC 1 cut(s) 209
BccI CCATC 3 cut(s) 55, 211, 215
BfaI CTAG 4 cut(s) 15, 104, 153, 256
BfoI RGCGCY 2 cut(s) 146, 159
Bme18I GGWCC 2 cut(s) 64, 98
BmeRI GACNNNNNGTC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 64, 98
BmiI GGNNCC 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 86
BmtI GCTAGC 1 cut(s) 156
BmuI ACTGGG 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 122, 209
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 3 cut(s) 130, 204, 217
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 73
BssMI GATC 2 cut(s) 122, 209
BssNI GRCGYC 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 40, 237
BstACI GRCGYC 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 66
BstH2I RGCGCY 2 cut(s) 146, 159
BstHHI GCGC 2 cut(s) 145, 158
BstKTI GATC 2 cut(s) 125, 212
BstMBI GATC 2 cut(s) 122, 209
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 209
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 2 cut(s) 145, 158
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 64, 98
CseI GACGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 113
CviJI RGCY 1 cut(s) 73
CviKI_1 RGCY 1 cut(s) 73
CviQI GTAC 1 cut(s) 231
DpnI GATC 2 cut(s) 124, 211
DpnII GATC 2 cut(s) 122, 209
DriI GACNNNNNGTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 196
Eco47I GGWCC 2 cut(s) 64, 98
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 69, 114
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 112
FauI CCCGC 1 cut(s) 188
FokI GGATG 1 cut(s) 73
FspBI CTAG 4 cut(s) 15, 104, 153, 256
GlaI GCGC 2 cut(s) 144, 157
GsuI CTGGAG 1 cut(s) 171
HaeII RGCGCY 2 cut(s) 146, 159
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 183
HhaI GCGC 2 cut(s) 145, 158
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 2 cut(s) 143, 156
HinP1I GCGC 2 cut(s) 143, 156
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 21, 84
Hpy188III TCNNGA 2 cut(s) 188, 207
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 2 cut(s) 25, 177
HpyCH4III ACNGT 2 cut(s) 40, 237
HpyCH4V TGCA 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 2 cut(s) 143, 156
Kzo9I GATC 2 cut(s) 122, 209
LpnPI CCDG 8 cut(s) 38, 42, 87, 104, 105, 192, 201, 206
MaeI CTAG 4 cut(s) 15, 104, 153, 256
MalI GATC 2 cut(s) 124, 211
MboI GATC 2 cut(s) 122, 209
MboII GAAGA 2 cut(s) 126, 256
MflI RGATCY 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 1 cut(s) 111
MspI CCGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 2 cut(s) 122, 209
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 211
NspI RCATGY 1 cut(s) 116
PciI ACATGT 1 cut(s) 112
PscI ACATGT 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 64, 98
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
Sau3AI GATC 2 cut(s) 122, 209
Sau96I GGNCC 2 cut(s) 64, 98
SetI ASST 3 cut(s) 16, 34, 257
SinI GGWCC 2 cut(s) 64, 98
SsiI CCGC 1 cut(s) 181
SspMI CTAG 4 cut(s) 15, 104, 153, 256
TaaI ACNGT 2 cut(s) 40, 237
TaqI TCGA 1 cut(s) 128
TatI WGTACW 1 cut(s) 230
TscAI CASTG 1 cut(s) 52
TspRI CASTG 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 64, 98
XceI RCATGY 1 cut(s) 116
XspI CTAG 4 cut(s) 15, 104, 153, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.