Plant transposase (Ptta/En/Spm family)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_24 | PF03004 | 9 - 114 | 3.5e-06 | Plant transposase (Ptta/En/Spm family) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 270 |
| AccB1I | GGYRCC | 1 cut(s) | 386 |
| AciI | CCGC | 2 cut(s) | 368, 464 |
| AclWI | GGATC | 1 cut(s) | 324 |
| AcyI | GRCGYC | 1 cut(s) | 267 |
| AdeI | CACNNNGTG | 1 cut(s) | 104 |
| AfaI | GTAC | 2 cut(s) | 276, 358 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 262 |
| AgsI | TTSAA | 2 cut(s) | 142, 430 |
| AjiI | CACGTC | 1 cut(s) | 104 |
| AluBI | AGCT | 2 cut(s) | 35, 241 |
| AluI | AGCT | 2 cut(s) | 35, 241 |
| Alw21I | GWGCWC | 1 cut(s) | 212 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| AlwI | GGATC | 1 cut(s) | 324 |
| Ama87I | CYCGRG | 1 cut(s) | 36 |
| AoxI | GGCC | 1 cut(s) | 465 |
| ApeKI | GCWGC | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 1 cut(s) | 203 |
| AsuII | TTCGAA | 1 cut(s) | 71 |
| AvaI | CYCGRG | 1 cut(s) | 36 |
| BanI | GGYRCC | 1 cut(s) | 386 |
| Bbv12I | GWGCWC | 1 cut(s) | 212 |
| BbvI | GCAGC | 1 cut(s) | 250 |
| BccI | CCATC | 1 cut(s) | 17 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BfaI | CTAG | 1 cut(s) | 469 |
| BisI | GCNGC | 2 cut(s) | 239, 465 |
| BlsI | GCNGC | 2 cut(s) | 240, 466 |
| BmeT110I | CYCGRG | 1 cut(s) | 36 |
| BmgBI | CACGTC | 1 cut(s) | 104 |
| BmiI | GGNNCC | 1 cut(s) | 388 |
| BmsI | GCATC | 1 cut(s) | 274 |
| Bpu14I | TTCGAA | 1 cut(s) | 71 |
| BsaHI | GRCGYC | 1 cut(s) | 267 |
| BsaI | GGTCTC | 1 cut(s) | 245 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 262 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseGI | GGATG | 3 cut(s) | 10, 157, 289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BseMII | CTCAG | 1 cut(s) | 297 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BseXI | GCAGC | 1 cut(s) | 250 |
| Bsh1285I | CGRYCG | 1 cut(s) | 261 |
| BshFI | GGCC | 1 cut(s) | 467 |
| BshNI | GGYRCC | 1 cut(s) | 386 |
| BsiEI | CGRYCG | 1 cut(s) | 261 |
| BsiHKAI | GWGCWC | 1 cut(s) | 212 |
| BsiHKCI | CYCGRG | 1 cut(s) | 36 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 262 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 1 cut(s) | 467 |
| Bso31I | GGTCTC | 1 cut(s) | 245 |
| BsoBI | CYCGRG | 1 cut(s) | 36 |
| Bsp119I | TTCGAA | 1 cut(s) | 71 |
| Bsp1286I | GDGCHC | 1 cut(s) | 212 |
| Bsp143I | GATC | 3 cut(s) | 258, 297, 316 |
| BspACI | CCGC | 2 cut(s) | 368, 464 |
| BspANI | GGCC | 1 cut(s) | 467 |
| BspCNI | CTCAG | 1 cut(s) | 298 |
| BspHI | TCATGA | 1 cut(s) | 300 |
| BspLI | GGNNCC | 1 cut(s) | 388 |
| BspPI | GGATC | 1 cut(s) | 324 |
| BspT104I | TTCGAA | 1 cut(s) | 71 |
| BspT107I | GGYRCC | 1 cut(s) | 386 |
| BspTNI | GGTCTC | 1 cut(s) | 245 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 3 cut(s) | 258, 297, 316 |
| BssNI | GRCGYC | 1 cut(s) | 267 |
| BssT1I | CCWWGG | 1 cut(s) | 279 |
| Bst4CI | ACNGT | 1 cut(s) | 176 |
| Bst6I | CTCTTC | 1 cut(s) | 397 |
| BstACI | GRCGYC | 1 cut(s) | 267 |
| BstBI | TTCGAA | 1 cut(s) | 71 |
| BstDEI | CTNAG | 3 cut(s) | 117, 306, 449 |
| BstF5I | GGATG | 3 cut(s) | 10, 157, 289 |
| BstKTI | GATC | 3 cut(s) | 261, 300, 319 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 3 cut(s) | 258, 297, 316 |
| BstMCI | CGRYCG | 1 cut(s) | 261 |
| BstNSI | RCATGY | 1 cut(s) | 149 |
| BstV1I | GCAGC | 1 cut(s) | 250 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 65, 188 |
| BsuRI | GGCC | 1 cut(s) | 467 |
| BtgZI | GCGATG | 1 cut(s) | 219 |
| BtrI | CACGTC | 1 cut(s) | 104 |
| BtsCI | GGATG | 3 cut(s) | 10, 157, 289 |
| BtsI | GCAGTG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 2 cut(s) | 181, 210 |
| CciI | TCATGA | 1 cut(s) | 300 |
| Csp6I | GTAC | 2 cut(s) | 275, 357 |
| CviAII | CATG | 3 cut(s) | 146, 301, 338 |
| CviJI | RGCY | 4 cut(s) | 35, 76, 241, 467 |
| CviKI_1 | RGCY | 4 cut(s) | 35, 76, 241, 467 |
| CviQI | GTAC | 2 cut(s) | 275, 357 |
| DdeI | CTNAG | 3 cut(s) | 117, 306, 449 |
| DpnI | GATC | 3 cut(s) | 260, 299, 318 |
| DpnII | GATC | 3 cut(s) | 258, 297, 316 |
| DraIII | CACNNNGTG | 1 cut(s) | 104 |
| Eam1104I | CTCTTC | 1 cut(s) | 397 |
| EarI | CTCTTC | 1 cut(s) | 397 |
| Eco130I | CCWWGG | 1 cut(s) | 279 |
| Eco31I | GGTCTC | 1 cut(s) | 245 |
| Eco88I | CYCGRG | 1 cut(s) | 36 |
| EcoT14I | CCWWGG | 1 cut(s) | 279 |
| ErhI | CCWWGG | 1 cut(s) | 279 |
| FaeI | CATG | 3 cut(s) | 149, 304, 341 |
| FaiI | YATR | 8 cut(s) | 18, 87, 147, 153, 189, 197, 302, 339 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 3 cut(s) | 145, 300, 337 |
| FauI | CCCGC | 1 cut(s) | 361 |
| Fnu4HI | GCNGC | 2 cut(s) | 239, 465 |
| FokI | GGATG | 3 cut(s) | 17, 144, 296 |
| Fsp4HI | GCNGC | 2 cut(s) | 239, 465 |
| FspBI | CTAG | 1 cut(s) | 469 |
| GluI | GCNGC | 2 cut(s) | 239, 465 |
| HaeIII | GGCC | 1 cut(s) | 467 |
| Hin1I | GRCGYC | 1 cut(s) | 267 |
| Hin1II | CATG | 3 cut(s) | 149, 304, 341 |
| HinfI | GANTC | 1 cut(s) | 41 |
| HphI | GGTGA | 1 cut(s) | 203 |
| Hpy166II | GTNNAC | 2 cut(s) | 357, 408 |
| Hpy188I | TCNGA | 2 cut(s) | 297, 321 |
| Hpy188III | TCNNGA | 4 cut(s) | 38, 301, 314, 377 |
| Hpy8I | GTNNAC | 2 cut(s) | 357, 408 |
| Hpy99I | CGWCG | 1 cut(s) | 105 |
| HpyAV | CCTTC | 2 cut(s) | 358, 424 |
| HpyCH4III | ACNGT | 1 cut(s) | 176 |
| HpyCH4IV | ACGT | 2 cut(s) | 103, 267 |
| HpyCH4V | TGCA | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 306, 449 |
| HpySE526I | ACGT | 2 cut(s) | 103, 267 |
| Hsp92I | GRCGYC | 1 cut(s) | 267 |
| Hsp92II | CATG | 3 cut(s) | 149, 304, 341 |
| Kzo9I | GATC | 3 cut(s) | 258, 297, 316 |
| LpnPI | CCDG | 5 cut(s) | 51, 261, 299, 396, 443 |
| Lsp1109I | GCAGC | 1 cut(s) | 250 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 1 cut(s) | 469 |
| MaeII | ACGT | 2 cut(s) | 103, 267 |
| MaeIII | GTNAC | 2 cut(s) | 176, 439 |
| MalI | GATC | 3 cut(s) | 260, 299, 318 |
| MboI | GATC | 3 cut(s) | 258, 297, 316 |
| MboII | GAAGA | 2 cut(s) | 384, 387 |
| MhlI | GDGCHC | 1 cut(s) | 212 |
| MluCI | AATT | 2 cut(s) | 401, 421 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MnlI | CCTC | 8 cut(s) | 88, 100, 103, 256, 301, 400, 427, 446 |
| MslI | CAYNNNNRTG | 1 cut(s) | 150 |
| NdeII | GATC | 3 cut(s) | 258, 297, 316 |
| NlaIII | CATG | 3 cut(s) | 149, 304, 341 |
| NlaIV | GGNNCC | 1 cut(s) | 388 |
| NmuCI | GTSAC | 2 cut(s) | 176, 439 |
| NspI | RCATGY | 1 cut(s) | 149 |
| NspV | TTCGAA | 1 cut(s) | 71 |
| PagI | TCATGA | 1 cut(s) | 300 |
| PkrI | GCNGC | 2 cut(s) | 240, 466 |
| Ple19I | CGATCG | 1 cut(s) | 261 |
| PleI | GAGTC | 1 cut(s) | 35 |
| PpsI | GAGTC | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 1 cut(s) | 388 |
| PvuI | CGATCG | 1 cut(s) | 261 |
| RsaI | GTAC | 2 cut(s) | 276, 358 |
| RsaNI | GTAC | 2 cut(s) | 275, 357 |
| RseI | CAYNNNNRTG | 1 cut(s) | 150 |
| SatI | GCNGC | 2 cut(s) | 239, 465 |
| Sau3AI | GATC | 3 cut(s) | 258, 297, 316 |
| SchI | GAGTC | 1 cut(s) | 35 |
| SduI | GDGCHC | 1 cut(s) | 212 |
| SetI | ASST | 9 cut(s) | 37, 106, 243, 270, 312, 348, 420, 457, 462 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfuI | TTCGAA | 1 cut(s) | 71 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 150 |
| Sse9I | AATT | 2 cut(s) | 401, 421 |
| SsiI | CCGC | 2 cut(s) | 368, 464 |
| SspMI | CTAG | 1 cut(s) | 469 |
| StyI | CCWWGG | 1 cut(s) | 279 |
| TaaI | ACNGT | 1 cut(s) | 176 |
| TaiI | ACGT | 2 cut(s) | 106, 270 |
| TaqI | TCGA | 2 cut(s) | 71, 261 |
| TasI | AATT | 2 cut(s) | 401, 421 |
| TauI | GCSGC | 1 cut(s) | 467 |
| TscAI | CASTG | 2 cut(s) | 181, 217 |
| TseFI | GTSAC | 2 cut(s) | 176, 439 |
| TseI | GCWGC | 1 cut(s) | 238 |
| Tsp45I | GTSAC | 2 cut(s) | 176, 439 |
| TspDTI | ATGAA | 2 cut(s) | 21, 146 |
| TspRI | CASTG | 2 cut(s) | 181, 217 |
| XceI | RCATGY | 1 cut(s) | 149 |
| XspI | CTAG | 1 cut(s) | 469 |
| ZraI | GACGTC | 1 cut(s) | 268 |