MD03G1095600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
8108075 .. 8108936
862 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1095600.v1.1.491

Sequence Viewer

Length: 219 bp
ATGGGCACGACAGGTGCCCCTCCGGTCACACCTTTGGGGCCAACGATGTTTACGGCTCCTGCGTCATTGACTTCTTTGGTGACATATCCTATCCTAAGTGATAGACGGACTCATCGACGGCCCCAAAGTTCTGAGGAGGCTCAGCCGTTTGGTAAGGCTTCCTCTATCCATGGAGAGAGGTCCCAGATAGATCAAAAAAATAACCAAAGACCCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.82

Weight (kDa)

10.24

Isoelectric Point (pI)

74.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 14
AoxI GGCC 2 cut(s) 38, 119
AspS9I GGNCC 3 cut(s) 38, 120, 180
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 180
BaeGI GKGCMC 2 cut(s) 8, 19
BanI GGYRCC 1 cut(s) 14
BceAI ACGGC 3 cut(s) 69, 130, 134
BlpI GCTNAGC 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 38, 120, 180
BmiI GGNNCC 5 cut(s) 16, 39, 57, 122, 182
Bpu1102I GCTNAGC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 123, 155
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 2 cut(s) 8, 19
BshFI GGCC 2 cut(s) 40, 121
BshNI GGYRCC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 2 cut(s) 40, 121
Bsp1286I GDGCHC 2 cut(s) 8, 19
Bsp143I GATC 1 cut(s) 190
Bsp1720I GCTNAGC 1 cut(s) 141
Bsp19I CCATGG 1 cut(s) 169
BspANI GGCC 2 cut(s) 40, 121
BspCNI CTCAG 2 cut(s) 124, 154
BspLI GGNNCC 5 cut(s) 16, 39, 57, 122, 182
BspT107I GGYRCC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 95, 132, 141
BstDSI CCRYGG 1 cut(s) 169
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstSLI GKGCMC 2 cut(s) 8, 19
BsuRI GGCC 2 cut(s) 40, 121
BtgI CCRYGG 1 cut(s) 169
Cfr13I GGNCC 3 cut(s) 38, 120, 180
CseI GACGC 1 cut(s) 51
CviAII CATG 1 cut(s) 170
CviJI RGCY 6 cut(s) 40, 56, 121, 140, 145, 158
CviKI_1 RGCY 6 cut(s) 40, 56, 121, 140, 145, 158
DdeI CTNAG 3 cut(s) 95, 132, 141
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 173
FaiI YATR 3 cut(s) 85, 171, 217
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 169
HaeIII GGCC 2 cut(s) 40, 121
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 173
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 95, 132, 141
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 36, 72, 197
MaeIII GTNAC 2 cut(s) 25, 79
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 8, 19
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 5 cut(s) 30, 127, 130, 171, 172
MspI CCGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 169
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 5 cut(s) 16, 39, 57, 122, 182
NmuCI GTSAC 2 cut(s) 25, 79
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 112
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
PspN4I GGNNCC 5 cut(s) 16, 39, 57, 122, 182
PspPI GGNCC 3 cut(s) 38, 120, 180
PspPPI RGGWCCY 1 cut(s) 180
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 3 cut(s) 38, 120, 180
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 2 cut(s) 8, 19
SetI ASST 3 cut(s) 16, 34, 182
SgeI CNNG 6 cut(s) 19, 24, 35, 71, 182, 196
SinI GGWCC 1 cut(s) 180
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 115
TseFI GTSAC 2 cut(s) 25, 79
Tsp45I GTSAC 2 cut(s) 25, 79
TspGWI ACGGA 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.