pycom06g06680

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000260
Physical Location & Seq
Forward (+)
10707899 .. 10708702
804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06680.1

Sequence Viewer

Length: 429 bp
ATGGTGAGGCTCAAAAACAACCACACAACGAAAACTCACACTAGGGGCAAAATCGTCTTTTCACGCGTACGTTTTAAAATTTTCGGAACGGGCTGTCACAGGCTCTACAAACATTTTATGGACCCAAAATTTGTGAAGAAATCTGTTGCTGGCCAGAAAGCTTGGGAGTCAAAGACACTTCTCCACCATTCTAGTTCGAAGCCCTTTTCGTTTAGGCTTGAGGCACGACGTGAGGAGGGTTCTATGTTCCCAGAGATCGATCGTAGCACATGTTCAAGGACGTTAACGTTCGACCTGGTTACTATGGTGGAAAAAAACATTGCTGTTCTCCAAGAAGCAACATTGCAGCTTCCCCCAGAGACCCCAATCGAGGACGTCATGGTACCCGAGGATGTAGGTTTTCAGATCGATCTTCCACTCTATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

143

Amino Acids

16.42

Weight (kDa)

9.36

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 378
Acc65I GGTACC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 382
AccII CGCG 1 cut(s) 66
AclI AACGTT 1 cut(s) 287
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 2 cut(s) 78, 128
AcyI GRCGYC 1 cut(s) 375
AdeI CACNNNGTG 1 cut(s) 230
AfaI GTAC 2 cut(s) 69, 384
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 2 cut(s) 64, 269
AgsI TTSAA 1 cut(s) 276
AjiI CACGTC 1 cut(s) 230
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 161, 349
AluI AGCT 2 cut(s) 161, 349
Alw26I GTCTC 1 cut(s) 353
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 2 cut(s) 78, 128
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp718I GGTACC 1 cut(s) 382
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 197
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 121
BalI TGGCCA 1 cut(s) 153
BanI GGYRCC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 358
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 2 cut(s) 42, 192
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 123, 384
BmrFI CCNGG 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 239
Bsa29I ATCGAT 2 cut(s) 258, 408
BsaHI GRCGYC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse3DI GCAATG 2 cut(s) 318, 341
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 2 cut(s) 258, 408
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMI GCAATG 2 cut(s) 318, 341
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 358
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 382
BshVI ATCGAT 2 cut(s) 258, 408
BsiEI CGRYCG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 386
BsiWI CGTACG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 197
Bsp143I GATC 4 cut(s) 255, 259, 405, 409
BspANI GGCC 1 cut(s) 153
BspDI ATCGAT 2 cut(s) 258, 408
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 123, 384
BspT104I TTCGAA 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 382
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 2 cut(s) 318, 341
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 4 cut(s) 255, 259, 405, 409
BssNI GRCGYC 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 375
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 4 cut(s) 258, 262, 408, 412
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 4 cut(s) 255, 259, 405, 409
BstMCI CGRYCG 1 cut(s) 262
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 294
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 358
Bsu15I ATCGAT 2 cut(s) 258, 408
BsuRI GGCC 1 cut(s) 153
BsuTUI ATCGAT 2 cut(s) 258, 408
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 2 cut(s) 258, 408
CsiI ACCWGGT 1 cut(s) 294
Csp6I GTAC 2 cut(s) 68, 383
CviAII CATG 2 cut(s) 270, 379
CviJI RGCY 8 cut(s) 10, 93, 103, 153, 161, 202, 217, 349
CviKI_1 RGCY 8 cut(s) 10, 93, 103, 153, 161, 202, 217, 349
CviQI GTAC 2 cut(s) 68, 383
DpnI GATC 4 cut(s) 257, 261, 407, 411
DpnII GATC 4 cut(s) 255, 259, 405, 409
DraI TTTAAA 1 cut(s) 76
DraIII CACNNNGTG 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 273, 382
FaiI YATR 6 cut(s) 119, 245, 271, 305, 380, 423
FatI CATG 2 cut(s) 269, 378
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 404
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 2 cut(s) 42, 192
GluI GCNGC 1 cut(s) 347
HaeIII GGCC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 375
Hin1II CATG 2 cut(s) 273, 382
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 1 cut(s) 167
HpaI GTTAAC 1 cut(s) 285
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 2 cut(s) 86, 405
Hpy8I GTNNAC 1 cut(s) 285
Hpy99I CGWCG 1 cut(s) 231
HpyCH4IV ACGT 5 cut(s) 70, 229, 281, 287, 375
HpyCH4V TGCA 1 cut(s) 346
HpySE526I ACGT 5 cut(s) 70, 229, 281, 287, 375
Hsp92I GRCGYC 1 cut(s) 375
Hsp92II CATG 2 cut(s) 273, 382
KpnI GGTACC 1 cut(s) 386
KspAI GTTAAC 1 cut(s) 285
Kzo9I GATC 4 cut(s) 255, 259, 405, 409
LpnPI CCDG 7 cut(s) 85, 135, 167, 264, 281, 308, 369
Lsp1109I GCAGC 1 cut(s) 358
MabI ACCWGGT 1 cut(s) 294
MaeI CTAG 2 cut(s) 42, 192
MaeII ACGT 5 cut(s) 70, 229, 281, 287, 375
MaeIII GTNAC 2 cut(s) 95, 298
MalI GATC 4 cut(s) 257, 261, 407, 411
MboI GATC 4 cut(s) 255, 259, 405, 409
MboII GAAGA 2 cut(s) 148, 404
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 2 cut(s) 78, 128
MluI ACGCGT 1 cut(s) 64
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 5 cut(s) 214, 226, 229, 364, 382
Mox20I TGGCCA 1 cut(s) 153
MscI TGGCCA 1 cut(s) 153
MseI TTAA 2 cut(s) 75, 284
Msp20I TGGCCA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 66
NdeII GATC 4 cut(s) 255, 259, 405, 409
NlaIII CATG 2 cut(s) 273, 382
NlaIV GGNNCC 2 cut(s) 123, 384
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 273
NspV TTCGAA 1 cut(s) 197
PciI ACATGT 1 cut(s) 269
Pfl23II CGTACG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 348
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PscI ACATGT 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspLI CGTACG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 123, 384
PspPI GGNCC 1 cut(s) 121
PsrI GAACNNNNNNTAC 2 cut(s) 256, 288
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 2 cut(s) 69, 384
RsaNI GTAC 2 cut(s) 68, 383
SaqAI TTAA 2 cut(s) 75, 284
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 4 cut(s) 255, 259, 405, 409
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 296
SetI ASST 9 cut(s) 73, 163, 232, 284, 290, 297, 351, 378, 400
SexAI ACCWGGT 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 197
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 78, 128
SspMI CTAG 2 cut(s) 42, 192
StyD4I CCNGG 1 cut(s) 294
TaiI ACGT 5 cut(s) 73, 232, 284, 290, 378
TaqI TCGA 5 cut(s) 197, 258, 291, 369, 408
TasI AATT 2 cut(s) 78, 128
Tru1I TTAA 2 cut(s) 75, 284
Tru9I TTAA 2 cut(s) 75, 284
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 2 cut(s) 78, 128
XceI RCATGY 1 cut(s) 273
XspI CTAG 2 cut(s) 42, 192
ZraI GACGTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.