MD01G1143700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000260
Physical Location & Seq
Reverse (-)
25409899 .. 25415321
5423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1143700.v1.1.491

Sequence Viewer

Length: 315 bp
ATGACTAATGTCCTGGATCATAACTTTGGTTGTCGTCATGGCAAGGTTGTTCCATGTATGGGGAAAGTGCGGGTTCGTGAGACGGGTGCCTCTTCTTCCAGATCGAACACAGCAGAAGTTGATGCATTGAAGGAGGAAGTGACAACCCTAAAAGGTCAGTTTGCAGCCCAGGGCGAGGAGATGAGGGCCTATGCCGGGATGGTGAGAGACCTTGTACGAGCCATACAGATGTCCGGCCTCCAAATCTCGCTACCAGCAATTCATCTTGCTCCACATTCGATCTCAGAGCCATCTCGCCCTACTGATACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

105

Amino Acids

11.28

Weight (kDa)

7.87

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 24
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 3 cut(s) 59, 175, 195
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 2 cut(s) 12, 168
Alw26I GTCTC 2 cut(s) 74, 201
AlwI GGATC 1 cut(s) 24
AoxI GGCC 2 cut(s) 186, 235
ApeKI GCWGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 193, 298
BciT130I CCWGG 2 cut(s) 14, 170
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 74, 201
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 3 cut(s) 14, 170, 196
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 3 cut(s) 14, 170, 196
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 304
BoxI GACNNNNGTC 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 196
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 168, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 175, 195
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 2 cut(s) 14, 170
BseDI CCNNGG 2 cut(s) 168, 169
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 59, 175, 195
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 310
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 188, 237
BshNI GGYRCC 1 cut(s) 86
BsiSI CCGG 2 cut(s) 195, 234
BslI CCNNNNNNNGG 3 cut(s) 59, 175, 195
BsmAI GTCTC 2 cut(s) 74, 201
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 188, 237
Bso31I GGTCTC 1 cut(s) 201
Bsp143I GATC 3 cut(s) 16, 101, 279
BspACI CCGC 1 cut(s) 70
BspANI GGCC 2 cut(s) 188, 237
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 168, 169
BssMI GATC 3 cut(s) 16, 101, 279
Bst2UI CCWGG 2 cut(s) 14, 170
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 204
BstKTI GATC 3 cut(s) 19, 104, 282
BstMAI GTCTC 2 cut(s) 74, 201
BstMBI GATC 3 cut(s) 16, 101, 279
BstNI CCWGG 2 cut(s) 14, 170
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 3 cut(s) 12, 168, 194
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 188, 237
BtsCI GGATG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 215
CviAII CATG 2 cut(s) 38, 54
CviJI RGCY 5 cut(s) 167, 188, 221, 237, 289
CviKI_1 RGCY 5 cut(s) 167, 188, 221, 237, 289
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 1 cut(s) 283
DpnI GATC 3 cut(s) 18, 103, 281
DpnII GATC 3 cut(s) 16, 101, 279
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 186
EcoRII CCWGG 2 cut(s) 12, 168
EcoT22I ATGCAT 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 2 cut(s) 41, 57
FaiI YATR 6 cut(s) 21, 39, 55, 59, 192, 224
FatI CATG 2 cut(s) 37, 53
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 188, 237
HapII CCGG 2 cut(s) 195, 234
Hin1II CATG 2 cut(s) 41, 57
HpaII CCGG 2 cut(s) 195, 234
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 77, 99
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 125, 164
HpyF3I CTNAG 1 cut(s) 283
Hsp92II CATG 2 cut(s) 41, 57
Kzo9I GATC 3 cut(s) 16, 101, 279
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 26, 112, 155, 182, 208, 247, 267
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 18, 103, 281
MboI GATC 3 cut(s) 16, 101, 279
MboII GAAGA 2 cut(s) 84, 87
MluCI AATT 1 cut(s) 258
MnlI CCTC 5 cut(s) 100, 127, 169, 177, 248
Mph1103I ATGCAT 1 cut(s) 127
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 2 cut(s) 195, 234
MspR9I CCNGG 3 cut(s) 14, 170, 196
MvaI CCWGG 2 cut(s) 14, 170
NciI CCSGG 1 cut(s) 196
NdeII GATC 3 cut(s) 16, 101, 279
NlaIII CATG 2 cut(s) 41, 57
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 127
PasI CCCWGGG 1 cut(s) 169
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 12, 168
PspGI CCWGG 2 cut(s) 12, 168
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 186
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 227
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 3 cut(s) 16, 101, 279
Sau96I GGNCC 1 cut(s) 186
ScrFI CCNGG 3 cut(s) 14, 170, 196
SetI ASST 3 cut(s) 48, 157, 213
SfaNI GCATC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 3 cut(s) 12, 168, 194
TaqI TCGA 2 cut(s) 104, 278
TasI AATT 1 cut(s) 258
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 251
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.