pycom01g10640

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000260
Physical Location & Seq
Reverse (-)
11408691 .. 11412442
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10640.3

Sequence Viewer

Length: 684 bp
ATGTCTCGCCTTATATCTACCTGGAGGGCTGCGAGCAATAGGTCCCCCGCACCACCTCCACCACCTCCTACTGCGAGGAGTGCTCCATTGATAGTGGAGCCTCCAGTGGTTGCGTCAGGAGGACCTGATGTGGCACAGGCGCTGGAATCACCGACATCTTCAGTGACGCTTCCGCCTAGTGCATGTCATATTCATCGGCGTGTTTTGGGAATTGCTAAGAAAAACACTCGGGGATCTTACCGACACCTTAAGACGGAGCAGGTCACTCAGGTGACAAACGATCGTATCACGACAGGATACGACAAGAGGCATCGGGCTACACCTACAGCGGAGCTACATAGTGCATTGGCCCACGACGTGGGACATGTCGTTAAGAACTACAATTTTGACGACATAAACGAGTCGATGAACAGCTACCTGGACAGGTTGTTTTATGAGCAGTACAAGCAGTGGAAGAGCAACCTCCACAAACATTTTGACTTGTTTGATGATCCAGAGGTCGCTCTAGAGAAGGATTGCCTGCTAAAGTTGAAAGATCAATCGGACGAGTGGGCGTGGCTCGACGACCATTTTCTGGAGCCCGCCTATGTGAAGAAGGCGAAGGCGAACAAGATCAACTGGGAGAAGAAGGCTCTTATCCACCATTCTGGTTCGAGACCCTTCTCCTATAGGATGAAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

228

Amino Acids

25.78

Weight (kDa)

9.22

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccB7I CCANNNNNTGG 2 cut(s) 358, 574
AciI CCGC 4 cut(s) 48, 173, 329, 582
AclWI GGATC 2 cut(s) 241, 485
AcuI CTGAAG 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 358
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 3 cut(s) 253, 358, 574
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 1 cut(s) 532
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 2 cut(s) 20, 417
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 2 cut(s) 334, 414
AluI AGCT 2 cut(s) 334, 414
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 9, 649
AlwI GGATC 2 cut(s) 241, 485
AlwNI CAGNNNCTG 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 3 cut(s) 42, 122, 349
AsuHPI GGTGA 2 cut(s) 141, 283
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 2 cut(s) 42, 122
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BanII GRGCYC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 2 cut(s) 22, 419
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 9, 649
BfaI CTAG 2 cut(s) 177, 506
BfmI CTRYAG 2 cut(s) 324, 667
BfoI RGCGCY 1 cut(s) 143
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 1 cut(s) 290
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 2 cut(s) 22, 419
Bme18I GGWCC 2 cut(s) 42, 122
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 3 cut(s) 42, 122, 349
BmiI GGNNCC 3 cut(s) 44, 99, 579
BmrFI CCNGG 2 cut(s) 22, 419
BmrI ACTGGG 1 cut(s) 628
BmsI GCATC 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 628
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BpmI CTGGAG 3 cut(s) 43, 87, 596
BsaI GGTCTC 1 cut(s) 649
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 358, 574
Bse1I ACTGG 2 cut(s) 104, 623
BseBI CCWGG 2 cut(s) 22, 419
BseGI GGATG 1 cut(s) 678
BseLI CCNNNNNNNGG 3 cut(s) 253, 358, 574
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 104, 623
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 283
BshFI GGCC 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 228
BslFI GGGAC 2 cut(s) 28, 375
BslI CCNNNNNNNGG 3 cut(s) 253, 358, 574
BsmAI GTCTC 2 cut(s) 9, 649
BsmFI GGGAC 2 cut(s) 28, 375
BsnI GGCC 1 cut(s) 350
Bso31I GGTCTC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 85, 582
Bsp143I GATC 5 cut(s) 233, 280, 490, 535, 612
BspACI CCGC 4 cut(s) 48, 173, 329, 582
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 44, 99, 579
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 2 cut(s) 241, 485
BspQI GCTCTTC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 649
BsrI ACTGG 2 cut(s) 104, 623
BssMI GATC 5 cut(s) 233, 280, 490, 535, 612
Bst2UI CCWGG 2 cut(s) 22, 419
Bst6I CTCTTC 1 cut(s) 449
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 34, 521, 582
BstDEI CTNAG 2 cut(s) 216, 267
BstF5I GGATG 1 cut(s) 678
BstH2I RGCGCY 1 cut(s) 143
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 5 cut(s) 236, 283, 493, 538, 615
BstMAI GTCTC 2 cut(s) 9, 649
BstMBI GATC 5 cut(s) 233, 280, 490, 535, 612
BstMCI CGRYCG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 80, 445
BstNI CCWGG 2 cut(s) 22, 419
BstNSI RCATGY 2 cut(s) 186, 368
BstSCI CCNGG 2 cut(s) 20, 417
BstSFI CTRYAG 2 cut(s) 324, 667
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 647
BstYI RGATCY 1 cut(s) 233
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 350
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 1 cut(s) 678
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 3 cut(s) 111, 168, 455
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 3 cut(s) 34, 521, 582
CaiI CAGNNNCTG 1 cut(s) 142
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 3 cut(s) 42, 122, 349
CseI GACGC 2 cut(s) 102, 175
Csp6I GTAC 1 cut(s) 442
CviAII CATG 2 cut(s) 183, 365
CviJI RGCY 9 cut(s) 29, 100, 317, 334, 350, 414, 559, 580, 632
CviKI_1 RGCY 9 cut(s) 29, 100, 317, 334, 350, 414, 559, 580, 632
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 2 cut(s) 216, 267
DpnI GATC 5 cut(s) 235, 282, 492, 537, 614
DpnII GATC 5 cut(s) 233, 280, 490, 535, 612
DraIII CACNNNGTG 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
EciI GGCGGA 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 649
Eco47I GGWCC 2 cut(s) 42, 122
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 228
EcoO109I RGGNCCY 2 cut(s) 42, 122
EcoRII CCWGG 2 cut(s) 20, 417
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 2 cut(s) 186, 368
FaiI YATR 9 cut(s) 14, 184, 189, 339, 366, 395, 435, 588, 669
FaqI GGGAC 2 cut(s) 28, 375
FatI CATG 2 cut(s) 182, 364
FauI CCCGC 2 cut(s) 55, 589
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 177, 506
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 3 cut(s) 43, 87, 596
HaeII RGCGCY 1 cut(s) 143
HaeIII GGCC 1 cut(s) 350
HgaI GACGC 2 cut(s) 102, 175
HhaI GCGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 186, 368
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 2 cut(s) 146, 401
HphI GGTGA 2 cut(s) 141, 283
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 6 cut(s) 117, 289, 494, 506, 575, 654
Hpy99I CGWCG 2 cut(s) 359, 566
HpyAV CCTTC 6 cut(s) 505, 589, 595, 622, 670, 670
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 182, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 445
HpyF3I CTNAG 2 cut(s) 216, 267
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 2 cut(s) 186, 368
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 5 cut(s) 233, 280, 490, 535, 612
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 5 cut(s) 88, 97, 256, 331, 577
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 319
MaeI CTAG 2 cut(s) 177, 506
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 163, 262, 271
MalI GATC 5 cut(s) 235, 282, 492, 537, 614
MboI GATC 5 cut(s) 233, 280, 490, 535, 612
MboII GAAGA 4 cut(s) 150, 466, 604, 637
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 85, 582
MluCI AATT 2 cut(s) 210, 382
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 9 cut(s) 18, 66, 69, 75, 111, 113, 300, 473, 490
MseI TTAA 2 cut(s) 249, 372
MslI CAYNNNNRTG 2 cut(s) 198, 269
MspA1I CMGCKG 1 cut(s) 329
MspCI CTTAAG 1 cut(s) 248
MspR9I CCNGG 2 cut(s) 22, 419
MvaI CCWGG 2 cut(s) 22, 419
MwoI GCNNNNNNNGC 2 cut(s) 80, 445
NdeII GATC 5 cut(s) 233, 280, 490, 535, 612
NlaIII CATG 2 cut(s) 186, 368
NlaIV GGNNCC 3 cut(s) 44, 99, 579
NmuCI GTSAC 3 cut(s) 163, 262, 271
NspI RCATGY 2 cut(s) 186, 368
OliI CACNNNNGTG 1 cut(s) 269
PciI ACATGT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 396
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 2 cut(s) 358, 574
PkrI GCNGC 1 cut(s) 31
Ple19I CGATCG 1 cut(s) 283
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PpuMI RGGWCCY 2 cut(s) 42, 122
PscI ACATGT 1 cut(s) 364
Psp5II RGGWCCY 2 cut(s) 42, 122
Psp6I CCWGG 2 cut(s) 20, 417
PspGI CCWGG 2 cut(s) 20, 417
PspN4I GGNNCC 3 cut(s) 44, 99, 579
PspPI GGNCC 3 cut(s) 42, 122, 349
PspPPI RGGWCCY 2 cut(s) 42, 122
PstNI CAGNNNCTG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 233
PvuI CGATCG 1 cut(s) 283
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 2 cut(s) 198, 269
SapI GCTCTTC 1 cut(s) 449
SaqAI TTAA 2 cut(s) 249, 372
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 5 cut(s) 233, 280, 490, 535, 612
Sau96I GGNCC 3 cut(s) 42, 122, 349
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 22, 419
SduI GDGCHC 2 cut(s) 85, 582
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 2 cut(s) 324, 667
SinI GGWCC 2 cut(s) 42, 122
SmiMI CAYNNNNRTG 2 cut(s) 198, 269
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 2 cut(s) 210, 382
SsiI CCGC 4 cut(s) 48, 173, 329, 582
SspMI CTAG 2 cut(s) 177, 506
StyD4I CCNGG 2 cut(s) 20, 417
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 404, 561, 653
TasI AATT 2 cut(s) 210, 382
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 249, 372
Tru9I TTAA 2 cut(s) 249, 372
TscAI CASTG 3 cut(s) 111, 168, 455
TseFI GTSAC 3 cut(s) 163, 262, 271
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 3 cut(s) 163, 262, 271
TspDTI ATGAA 2 cut(s) 182, 422
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 3 cut(s) 111, 168, 455
Van91I CCANNNNNTGG 2 cut(s) 358, 574
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 42, 122
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 2 cut(s) 186, 368
XspI CTAG 2 cut(s) 177, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.