pycom02g21170

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
19355430 .. 19355891
462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21170.1

Sequence Viewer

Length: 225 bp
ATGTTGCTGCCCTTTTCATATAGGCCTGAGGCACGATGTCAGGAAGGTTTTAAGTTTCCAGAGATCGACGTGTTCAAGGACGTTTATGTTCGACCTGGTAATGAGACCACTAAGCAGCTTCATCTGCTATGGTGGAAAAGGGTTGTTCTCCAAGAAGCAACATTGCAGCTTCCCCCAGAGACCCCGATGGAGGACGTCACTTTACCCGAGGATGTAGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.72

Weight (kDa)

4.81

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 76
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 118, 169
AluI AGCT 2 cut(s) 118, 169
Alw26I GTCTC 2 cut(s) 98, 173
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 3 cut(s) 7, 115, 166
AvaI CYCGRG 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 27
BbvI GCAGC 2 cut(s) 127, 178
BccI CCATC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 98, 173
BisI GCNGC 3 cut(s) 8, 116, 167
BlsI GCNGC 3 cut(s) 9, 117, 168
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 2 cut(s) 98, 173
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse21I CCTNAGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 127, 178
BshFI GGCC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 2 cut(s) 98, 173
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 2 cut(s) 98, 173
BsoBI CYCGRG 1 cut(s) 206
Bsp143I GATC 1 cut(s) 63
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 19
BspTNI GGTCTC 2 cut(s) 98, 173
BsrDI GCAATG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 27, 111
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 2 cut(s) 98, 173
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 124
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 127, 178
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 25
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 217
CsiI ACCWGGT 1 cut(s) 94
CviJI RGCY 3 cut(s) 25, 118, 169
CviKI_1 RGCY 3 cut(s) 25, 118, 169
DdeI CTNAG 2 cut(s) 27, 111
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 2 cut(s) 98, 173
Eco81I CCTNAGG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 94
FaiI YATR 4 cut(s) 19, 21, 87, 130
Fnu4HI GCNGC 3 cut(s) 8, 116, 167
Fsp4HI GCNGC 3 cut(s) 8, 116, 167
GluI GCNGC 3 cut(s) 8, 116, 167
HaeIII GGCC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 195
Hpy188III TCNNGA 2 cut(s) 41, 59
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 38
HpyCH4IV ACGT 3 cut(s) 69, 81, 195
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 124
HpyF3I CTNAG 2 cut(s) 27, 111
HpySE526I ACGT 3 cut(s) 69, 81, 195
Hsp92I GRCGYC 1 cut(s) 195
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 6 cut(s) 26, 39, 72, 81, 108, 189
Lsp1109I GCAGC 2 cut(s) 127, 178
MabI ACCWGGT 1 cut(s) 94
MaeII ACGT 3 cut(s) 69, 81, 195
MaeIII GTNAC 1 cut(s) 196
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MnlI CCTC 3 cut(s) 22, 184, 202
MseI TTAA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 124
NdeII GATC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 25
PkrI GCNGC 3 cut(s) 9, 117, 168
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 8, 116, 167
Sau3AI GATC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 96
SetI ASST 8 cut(s) 49, 72, 84, 97, 120, 171, 198, 220
SexAI ACCWGGT 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 25
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 94
TaiI ACGT 3 cut(s) 72, 84, 198
TaqI TCGA 2 cut(s) 66, 91
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 3 cut(s) 7, 115, 166
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 6, 110
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.