pycom13g07740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000260
Physical Location & Seq
Forward (+)
5113688 .. 5114308
621 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07740.2

Sequence Viewer

Length: 519 bp
ATGTTCGAGGACGTTTACGTTCGACCTGGTGATGAGATAGCTAAGCAGCTTCATGATGCTATGGTGGAACAGCGCACTACTGTTCTCCAAGAAGCAACATCACAACTTCCCCCGGAGACCTCGATCGAGGACGCCACGATACCCGAGGATGCAGGTTTTCAGATCCTGACTAATGTCATGGATCAAAACTTCGGTCGTCGTCCTGGCAAAGTTGTTCGGGGTATGGGAAAAGCGCGAGTTCGTGAGACGGGTGCCTCTTCTTCCAGATCAAACACAGGAGAGGTCAGTGCATTGAAGGAGGAAGTGACAACCCTAAAGGGTCAACTTGCGGTCCAGAGTGAGCAAATAAGGGCCCGGGACGAGCAGATGAGGGCCCAGGGCGAGCAGATTAAGGCCCAGGGCGAGCAGATGAGAGACCTTGTACGAGCCATACAAATGTCTGGCCTCCAAATCTCACTACCAGTACCTGATCTTGCTACACCTTCGACTTCTGAGCCACTTTGCCCTACCGATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

173

Amino Acids

18.85

Weight (kDa)

4.84

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 329
AclWI GGATC 2 cut(s) 157, 189
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 423, 465
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 4 cut(s) 25, 202, 375, 396
AluBI AGCT 2 cut(s) 41, 49
AluI AGCT 2 cut(s) 41, 49
Alw26I GTCTC 3 cut(s) 110, 239, 408
AlwI GGATC 2 cut(s) 157, 189
AlwNI CAGNNNCTG 2 cut(s) 166, 467
Ama87I CYCGRG 2 cut(s) 143, 354
AoxI GGCC 4 cut(s) 351, 372, 393, 442
ApaI GGGCCC 2 cut(s) 355, 376
ApeKI GCWGC 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AspLEI GCGC 2 cut(s) 75, 235
AspS9I GGNCC 6 cut(s) 331, 351, 352, 372, 373, 394
AsuC2I CCSGG 3 cut(s) 113, 355, 356
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 143, 354
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 2 cut(s) 355, 376
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 355, 376
BbvI GCAGC 1 cut(s) 58
BciT130I CCWGG 4 cut(s) 27, 204, 377, 398
BcnI CCSGG 3 cut(s) 113, 355, 356
BcoDI GTCTC 3 cut(s) 110, 239, 408
BfaI CTAG 1 cut(s) 517
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 1 cut(s) 47
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 7 cut(s) 27, 113, 204, 355, 356, 377, 398
Bme18I GGWCC 1 cut(s) 331
BmeT110I CYCGRG 2 cut(s) 143, 354
BmgT120I GGNCC 6 cut(s) 331, 351, 352, 372, 373, 394
BmiI GGNNCC 3 cut(s) 253, 353, 374
BmrFI CCNGG 7 cut(s) 27, 113, 204, 355, 356, 377, 398
BmsI GCATC 2 cut(s) 46, 139
BoxI GACNNNNGTC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 42
BpuMI CCSGG 3 cut(s) 113, 355, 356
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 2 cut(s) 110, 408
BsaJI CCNNGG 7 cut(s) 111, 144, 354, 375, 376, 396, 397
Bse1I ACTGG 1 cut(s) 461
BseBI CCWGG 4 cut(s) 27, 204, 377, 398
BseDI CCNNGG 7 cut(s) 111, 144, 354, 375, 376, 396, 397
BseGI GGATG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 1 cut(s) 461
BseSI GKGCMC 2 cut(s) 355, 376
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 235
Bsh1285I CGRYCG 2 cut(s) 126, 196
BshFI GGCC 4 cut(s) 353, 374, 395, 444
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 2 cut(s) 126, 196
BsiHKCI CYCGRG 2 cut(s) 143, 354
BsiSI CCGG 2 cut(s) 113, 355
BslFI GGGAC 1 cut(s) 371
BsmAI GTCTC 3 cut(s) 110, 239, 408
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 4 cut(s) 353, 374, 395, 444
Bso31I GGTCTC 2 cut(s) 110, 408
BsoBI CYCGRG 2 cut(s) 143, 354
Bsp120I GGGCCC 2 cut(s) 351, 372
Bsp1286I GDGCHC 2 cut(s) 355, 376
Bsp143I GATC 5 cut(s) 123, 162, 181, 266, 469
Bsp1720I GCTNAGC 1 cut(s) 42
BspACI CCGC 1 cut(s) 329
BspANI GGCC 4 cut(s) 353, 374, 395, 444
BspCNI CTCAG 1 cut(s) 484
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 3 cut(s) 253, 353, 374
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 2 cut(s) 157, 189
BspT107I GGYRCC 1 cut(s) 251
BspTNI GGTCTC 2 cut(s) 110, 408
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 7 cut(s) 111, 144, 354, 375, 376, 396, 397
BssMI GATC 5 cut(s) 123, 162, 181, 266, 469
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 4 cut(s) 27, 204, 377, 398
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 383, 404
BstDEI CTNAG 2 cut(s) 42, 492
BstF5I GGATG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 2 cut(s) 75, 235
BstKTI GATC 5 cut(s) 126, 165, 184, 269, 472
BstMAI GTCTC 3 cut(s) 110, 239, 408
BstMBI GATC 5 cut(s) 123, 162, 181, 266, 469
BstMCI CGRYCG 2 cut(s) 126, 196
BstNI CCWGG 4 cut(s) 27, 204, 377, 398
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 7 cut(s) 25, 111, 202, 353, 354, 375, 396
BstSLI GKGCMC 2 cut(s) 355, 376
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 4 cut(s) 353, 374, 395, 444
BtsCI GGATG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 292
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 383, 404
CaiI CAGNNNCTG 2 cut(s) 166, 467
CciI TCATGA 1 cut(s) 52
CfoI GCGC 2 cut(s) 75, 235
Cfr13I GGNCC 6 cut(s) 331, 351, 352, 372, 373, 394
Cfr9I CCCGGG 1 cut(s) 354
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 2 cut(s) 422, 464
CviAII CATG 2 cut(s) 53, 178
CviJI RGCY 8 cut(s) 41, 49, 353, 374, 395, 428, 444, 496
CviKI_1 RGCY 8 cut(s) 41, 49, 353, 374, 395, 428, 444, 496
CviQI GTAC 2 cut(s) 422, 464
DdeI CTNAG 2 cut(s) 42, 492
DpnI GATC 5 cut(s) 125, 164, 183, 268, 471
DpnII GATC 5 cut(s) 123, 162, 181, 266, 469
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco24I GRGCYC 2 cut(s) 355, 376
Eco31I GGTCTC 2 cut(s) 110, 408
Eco47I GGWCC 1 cut(s) 331
Eco88I CYCGRG 2 cut(s) 143, 354
EcoO109I RGGNCCY 2 cut(s) 351, 372
EcoRII CCWGG 4 cut(s) 25, 202, 375, 396
EcoT38I GRGCYC 2 cut(s) 355, 376
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 2 cut(s) 56, 181
FaiI YATR 5 cut(s) 54, 62, 179, 224, 431
FaqI GGGAC 1 cut(s) 371
FatI CATG 2 cut(s) 52, 177
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 2 cut(s) 355, 376
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 1 cut(s) 517
GlaI GCGC 2 cut(s) 74, 234
GluI GCNGC 1 cut(s) 47
HaeIII GGCC 4 cut(s) 353, 374, 395, 444
HapII CCGG 2 cut(s) 113, 355
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 75, 235
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 56, 181
Hin6I GCGC 2 cut(s) 73, 233
HinP1I GCGC 2 cut(s) 73, 233
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HpaII CCGG 2 cut(s) 113, 355
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 16, 323
Hpy188I TCNGA 2 cut(s) 162, 493
Hpy188III TCNNGA 5 cut(s) 53, 166, 242, 264, 334
Hpy8I GTNNAC 2 cut(s) 16, 323
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 289, 492
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 12, 18
HpyCH4V TGCA 2 cut(s) 152, 290
HpyF3I CTNAG 2 cut(s) 42, 492
HpySE526I ACGT 2 cut(s) 12, 18
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 56, 181
HspAI GCGC 2 cut(s) 73, 233
Kzo9I GATC 5 cut(s) 123, 162, 181, 266, 469
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 46, 139
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 1 cut(s) 517
MaeII ACGT 2 cut(s) 12, 18
MaeIII GTNAC 1 cut(s) 304
MalI GATC 5 cut(s) 125, 164, 183, 268, 471
MboI GATC 5 cut(s) 123, 162, 181, 266, 469
MboII GAAGA 2 cut(s) 249, 252
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 2 cut(s) 355, 376
MnlI CCTC 8 cut(s) 121, 130, 139, 265, 274, 292, 363, 455
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 434
MspI CCGG 2 cut(s) 113, 355
MspR9I CCNGG 7 cut(s) 27, 113, 204, 355, 356, 377, 398
MvaI CCWGG 4 cut(s) 27, 204, 377, 398
MvnI CGCG 1 cut(s) 235
NciI CCSGG 3 cut(s) 113, 355, 356
NdeII GATC 5 cut(s) 123, 162, 181, 266, 469
NlaIII CATG 2 cut(s) 56, 181
NlaIV GGNNCC 3 cut(s) 253, 353, 374
NmuCI GTSAC 1 cut(s) 304
PagI TCATGA 1 cut(s) 52
PasI CCCWGGG 2 cut(s) 376, 397
PkrI GCNGC 1 cut(s) 48
Ple19I CGATCG 1 cut(s) 126
PshAI GACNNNNGTC 1 cut(s) 173
Psp6I CCWGG 4 cut(s) 25, 202, 375, 396
PspGI CCWGG 4 cut(s) 25, 202, 375, 396
PspN4I GGNNCC 3 cut(s) 253, 353, 374
PspOMI GGGCCC 2 cut(s) 351, 372
PspPI GGNCC 6 cut(s) 331, 351, 352, 372, 373, 394
PstNI CAGNNNCTG 2 cut(s) 166, 467
PsuI RGATCY 1 cut(s) 162
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 2 cut(s) 423, 465
RsaNI GTAC 2 cut(s) 422, 464
RseI CAYNNNNRTG 1 cut(s) 434
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 5 cut(s) 123, 162, 181, 266, 469
Sau96I GGNCC 6 cut(s) 331, 351, 352, 372, 373, 394
ScrFI CCNGG 7 cut(s) 27, 113, 204, 355, 356, 377, 398
SduI GDGCHC 2 cut(s) 355, 376
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 2 cut(s) 46, 139
SinI GGWCC 1 cut(s) 331
SmaI CCCGGG 1 cut(s) 356
SmiMI CAYNNNNRTG 1 cut(s) 434
SsiI CCGC 1 cut(s) 329
SspMI CTAG 1 cut(s) 517
StyD4I CCNGG 7 cut(s) 25, 111, 202, 353, 354, 375, 396
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 2 cut(s) 15, 21
TaqI TCGA 5 cut(s) 6, 22, 122, 126, 485
TaqII GACCGA 1 cut(s) 182
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 41
TspMI CCCGGG 1 cut(s) 354
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 331
XmaI CCCGGG 1 cut(s) 354
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.