pycom11g17720

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
19995317 .. 19995912
596 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17720.1

Sequence Viewer

Length: 495 bp
ATGCTCAAGGACGTTTACGTTCGACCTGGTCAGGAGATTACTGAGCAGTTTCATGCTACTATGGTGGAAAAGAGCACTTCTGTTCTCCAAGAAGCAACATCGCAGCTTCCCCCGGAGACCCCGATCGAGGACGTCACGATACCTGAGGATGTAGGTTTTCAGATCATGACTGATGTCCTGGATCAGAACTTAGGTCGTCGTCGTGGCAAGGTTGTTCGGTGTATGGGGAAAGCACAGATTCGTGAAACGGGTGCCTCTTCTTCCAGATCAAACGCAGAGGTAGATGCATTGAAGGAGGAAGTGACAACCCTAAAGGCCCAGGGCGAGCAGATGAAGGAGCAACTGAGGGCCCAGGGCGAGGAGATGAGGTCATATGCCGGGGCGTGGAGAGACCTTGTACAAGCCATACAGATGTCCGGCCTTCAAATCTCACTACCAGCACTTCATCTTGGTCCACCTTCGACCTCAGAGCCACCTCGTCCTGCTGATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.08

Weight (kDa)

5.02

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 251
AclWI GGATC 1 cut(s) 189
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 127, 358, 384
AgsI TTSAA 2 cut(s) 292, 425
AjnI CCWGG 4 cut(s) 25, 177, 318, 351
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 2 cut(s) 110, 384
AlwI GGATC 1 cut(s) 189
AoxI GGCC 3 cut(s) 315, 348, 418
ApaI GGGCCC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 103
AspS9I GGNCC 4 cut(s) 316, 348, 349, 452
AsuC2I CCSGG 2 cut(s) 113, 379
AvaII GGWCC 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 115
BciT130I CCWGG 4 cut(s) 27, 179, 320, 353
BcnI CCSGG 2 cut(s) 113, 379
BcoDI GTCTC 2 cut(s) 110, 384
BfaI CTAG 1 cut(s) 493
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 6 cut(s) 27, 113, 179, 320, 353, 379
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 4 cut(s) 316, 348, 349, 452
BmiI GGNNCC 2 cut(s) 253, 350
BmrFI CCNGG 6 cut(s) 27, 113, 179, 320, 353, 379
BmsI GCATC 1 cut(s) 274
BoxI GACNNNNGTC 1 cut(s) 173
BpuMI CCSGG 2 cut(s) 113, 379
BsaHI GRCGYC 1 cut(s) 132
BsaI GGTCTC 2 cut(s) 110, 384
BsaJI CCNNGG 6 cut(s) 111, 318, 319, 351, 352, 378
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 358, 384
Bse21I CCTNAGG 1 cut(s) 144
BseBI CCWGG 4 cut(s) 27, 179, 320, 353
BseDI CCNNGG 6 cut(s) 111, 318, 319, 351, 352, 378
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 3 cut(s) 127, 358, 384
BseMII CTCAG 4 cut(s) 33, 135, 335, 480
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 3 cut(s) 317, 350, 420
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 3 cut(s) 113, 378, 417
BslI CCNNNNNNNGG 3 cut(s) 127, 358, 384
BsmAI GTCTC 2 cut(s) 110, 384
BsnI GGCC 3 cut(s) 317, 350, 420
Bso31I GGTCTC 2 cut(s) 110, 384
Bsp120I GGGCCC 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 77, 352
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 4 cut(s) 123, 162, 181, 266
BspANI GGCC 3 cut(s) 317, 350, 420
BspCNI CTCAG 4 cut(s) 34, 136, 336, 479
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 253, 350
BspPI GGATC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 251
BspTNI GGTCTC 2 cut(s) 110, 384
BsrGI TGTACA 1 cut(s) 397
BssECI CCNNGG 6 cut(s) 111, 318, 319, 351, 352, 378
BssMI GATC 4 cut(s) 123, 162, 181, 266
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 4 cut(s) 27, 179, 320, 353
Bst6I CTCTTC 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 5 cut(s) 42, 144, 190, 344, 466
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 4 cut(s) 126, 165, 184, 269
BstMAI GTCTC 2 cut(s) 110, 384
BstMBI GATC 4 cut(s) 123, 162, 181, 266
BstMCI CGRYCG 1 cut(s) 126
BstNI CCWGG 4 cut(s) 27, 179, 320, 353
BstPAI GACNNNNGTC 1 cut(s) 173
BstSCI CCNGG 6 cut(s) 25, 111, 177, 318, 351, 377
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 3 cut(s) 317, 350, 420
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 326
CciI TCATGA 1 cut(s) 165
Cfr13I GGNCC 4 cut(s) 316, 348, 349, 452
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 1 cut(s) 398
CviAII CATG 2 cut(s) 53, 166
CviJI RGCY 6 cut(s) 106, 317, 350, 404, 420, 472
CviKI_1 RGCY 6 cut(s) 106, 317, 350, 404, 420, 472
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 5 cut(s) 42, 144, 190, 344, 466
DpnI GATC 4 cut(s) 125, 164, 183, 268
DpnII GATC 4 cut(s) 123, 162, 181, 266
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 352
Eco31I GGTCTC 2 cut(s) 110, 384
Eco47I GGWCC 1 cut(s) 452
Eco81I CCTNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 348
EcoRII CCWGG 4 cut(s) 25, 177, 318, 351
EcoT22I ATGCAT 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 2 cut(s) 56, 169
FaiI YATR 7 cut(s) 54, 62, 167, 224, 373, 375, 407
FatI CATG 2 cut(s) 52, 165
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 493
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 3 cut(s) 317, 350, 420
HapII CCGG 3 cut(s) 113, 378, 417
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 56, 169
HinfI GANTC 1 cut(s) 238
HpaII CCGG 3 cut(s) 113, 378, 417
Hpy166II GTNNAC 2 cut(s) 16, 455
Hpy188I TCNGA 3 cut(s) 162, 186, 469
Hpy188III TCNNGA 5 cut(s) 32, 136, 166, 242, 264
Hpy8I GTNNAC 2 cut(s) 16, 455
Hpy99I CGWCG 2 cut(s) 201, 204
HpyAV CCTTC 4 cut(s) 286, 328, 431, 468
HpyCH4IV ACGT 3 cut(s) 12, 18, 132
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 5 cut(s) 42, 144, 190, 344, 466
HpySE526I ACGT 3 cut(s) 12, 18, 132
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 56, 169
Kzo9I GATC 4 cut(s) 123, 162, 181, 266
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 274
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 1 cut(s) 493
MaeII ACGT 3 cut(s) 12, 18, 132
MaeIII GTNAC 2 cut(s) 133, 301
MalI GATC 4 cut(s) 125, 164, 183, 268
MboI GATC 4 cut(s) 123, 162, 181, 266
MboII GAAGA 2 cut(s) 249, 252
MhlI GDGCHC 2 cut(s) 77, 352
Mph1103I ATGCAT 1 cut(s) 289
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 3 cut(s) 113, 378, 417
MspR9I CCNGG 6 cut(s) 27, 113, 179, 320, 353, 379
MvaI CCWGG 4 cut(s) 27, 179, 320, 353
NciI CCSGG 2 cut(s) 113, 379
NdeI CATATG 1 cut(s) 373
NdeII GATC 4 cut(s) 123, 162, 181, 266
NlaIII CATG 2 cut(s) 56, 169
NlaIV GGNNCC 2 cut(s) 253, 350
NmuCI GTSAC 2 cut(s) 133, 301
NsiI ATGCAT 1 cut(s) 289
PagI TCATGA 1 cut(s) 165
PasI CCCWGGG 2 cut(s) 319, 352
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 177
PkrI GCNGC 1 cut(s) 105
Ple19I CGATCG 1 cut(s) 126
PshAI GACNNNNGTC 1 cut(s) 173
Psp6I CCWGG 4 cut(s) 25, 177, 318, 351
PspGI CCWGG 4 cut(s) 25, 177, 318, 351
PspN4I GGNNCC 2 cut(s) 253, 350
PspOMI GGGCCC 1 cut(s) 348
PspPI GGNCC 4 cut(s) 316, 348, 349, 452
PsyI GACNNNGTC 1 cut(s) 27
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 410
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 4 cut(s) 123, 162, 181, 266
Sau96I GGNCC 4 cut(s) 316, 348, 349, 452
ScrFI CCNGG 6 cut(s) 27, 113, 179, 320, 353, 379
SduI GDGCHC 2 cut(s) 77, 352
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SspMI CTAG 1 cut(s) 493
StyD4I CCNGG 6 cut(s) 25, 111, 177, 318, 351, 377
TaiI ACGT 3 cut(s) 15, 21, 135
TaqI TCGA 3 cut(s) 22, 126, 461
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 1 cut(s) 238
TseFI GTSAC 2 cut(s) 133, 301
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 2 cut(s) 133, 301
TspDTI ATGAA 3 cut(s) 41, 347, 434
Tth111I GACNNNGTC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 452
XspI CTAG 1 cut(s) 493
ZraI GACGTC 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.