Plant transposase (Ptta/En/Spm family)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Phage_scaffold | PF06810 | 37 - 104 | 6.1e-06 | Phage capsid assembly scaffolding protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 12 |
| AccB1I | GGYRCC | 1 cut(s) | 128 |
| AciI | CCGC | 1 cut(s) | 272 |
| AclWI | GGATC | 1 cut(s) | 66 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AcyI | GRCGYC | 1 cut(s) | 9 |
| AfaI | GTAC | 2 cut(s) | 68, 333 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 175 |
| AgsI | TTSAA | 1 cut(s) | 440 |
| AjnI | CCWGG | 2 cut(s) | 54, 210 |
| AluBI | AGCT | 3 cut(s) | 202, 293, 367 |
| AluI | AGCT | 3 cut(s) | 202, 293, 367 |
| Alw26I | GTCTC | 2 cut(s) | 116, 359 |
| AlwI | GGATC | 1 cut(s) | 66 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| Ama87I | CYCGRG | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 228, 249 |
| ApaI | GGGCCC | 1 cut(s) | 253 |
| ApeKI | GCWGC | 2 cut(s) | 206, 367 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 55, 87 |
| AspLEI | GCGC | 2 cut(s) | 112, 316 |
| AspS9I | GGNCC | 4 cut(s) | 52, 229, 249, 250 |
| AsuHPI | GGTGA | 1 cut(s) | 406 |
| AvaI | CYCGRG | 1 cut(s) | 20 |
| AvaII | GGWCC | 1 cut(s) | 52 |
| BaeGI | GKGCMC | 1 cut(s) | 253 |
| BanI | GGYRCC | 1 cut(s) | 128 |
| BanII | GRGCYC | 1 cut(s) | 253 |
| BbvI | GCAGC | 2 cut(s) | 218, 354 |
| BciT130I | CCWGG | 2 cut(s) | 56, 212 |
| BcoDI | GTCTC | 2 cut(s) | 116, 359 |
| BfaI | CTAG | 1 cut(s) | 445 |
| BisI | GCNGC | 2 cut(s) | 207, 368 |
| BlsI | GCNGC | 2 cut(s) | 208, 369 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 212 |
| Bme18I | GGWCC | 1 cut(s) | 52 |
| BmeT110I | CYCGRG | 1 cut(s) | 20 |
| BmgT120I | GGNCC | 4 cut(s) | 52, 229, 249, 250 |
| BmiI | GGNNCC | 2 cut(s) | 130, 251 |
| BmrFI | CCNGG | 2 cut(s) | 56, 212 |
| BmrI | ACTGGG | 1 cut(s) | 423 |
| BmuI | ACTGGG | 1 cut(s) | 423 |
| BoxI | GACNNNNGTC | 1 cut(s) | 50 |
| Bsa29I | ATCGAT | 1 cut(s) | 382 |
| BsaHI | GRCGYC | 1 cut(s) | 9 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 2 cut(s) | 21, 210 |
| BsaWI | WCCGGW | 1 cut(s) | 350 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 175 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| BseBI | CCWGG | 2 cut(s) | 56, 212 |
| BseCI | ATCGAT | 1 cut(s) | 382 |
| BseDI | CCNNGG | 2 cut(s) | 21, 210 |
| BseGI | GGATG | 1 cut(s) | 31 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BseMII | CTCAG | 2 cut(s) | 39, 285 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseSI | GKGCMC | 1 cut(s) | 253 |
| BseXI | GCAGC | 2 cut(s) | 218, 354 |
| BseYI | CCCAGC | 1 cut(s) | 404 |
| Bsh1285I | CGRYCG | 1 cut(s) | 73 |
| BshFI | GGCC | 2 cut(s) | 230, 251 |
| BshNI | GGYRCC | 1 cut(s) | 128 |
| BshVI | ATCGAT | 1 cut(s) | 382 |
| BsiEI | CGRYCG | 1 cut(s) | 73 |
| BsiHKCI | CYCGRG | 1 cut(s) | 20 |
| BsiSI | CCGG | 1 cut(s) | 351 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 175 |
| BsmAI | GTCTC | 2 cut(s) | 116, 359 |
| BsmBI | CGTCTC | 1 cut(s) | 116 |
| BsnI | GGCC | 2 cut(s) | 230, 251 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| BsoBI | CYCGRG | 1 cut(s) | 20 |
| Bsp120I | GGGCCC | 1 cut(s) | 249 |
| Bsp1286I | GDGCHC | 1 cut(s) | 253 |
| Bsp1407I | TGTACA | 1 cut(s) | 331 |
| Bsp143I | GATC | 4 cut(s) | 39, 58, 379, 383 |
| BspACI | CCGC | 1 cut(s) | 272 |
| BspANI | GGCC | 2 cut(s) | 230, 251 |
| BspCNI | CTCAG | 2 cut(s) | 40, 286 |
| BspDI | ATCGAT | 1 cut(s) | 382 |
| BspHI | TCATGA | 1 cut(s) | 42 |
| BspLI | GGNNCC | 2 cut(s) | 130, 251 |
| BspPI | GGATC | 1 cut(s) | 66 |
| BspT107I | GGYRCC | 1 cut(s) | 128 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrGI | TGTACA | 1 cut(s) | 331 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssECI | CCNNGG | 2 cut(s) | 21, 210 |
| BssMI | GATC | 4 cut(s) | 39, 58, 379, 383 |
| BssNI | GRCGYC | 1 cut(s) | 9 |
| Bst2UI | CCWGG | 2 cut(s) | 56, 212 |
| Bst4CI | ACNGT | 1 cut(s) | 71 |
| Bst6I | CTCTTC | 1 cut(s) | 139 |
| BstACI | GRCGYC | 1 cut(s) | 9 |
| BstAUI | TGTACA | 1 cut(s) | 331 |
| BstC8I | GCNNGC | 3 cut(s) | 204, 260, 372 |
| BstDEI | CTNAG | 3 cut(s) | 48, 294, 340 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 173 |
| BstF5I | GGATG | 1 cut(s) | 31 |
| BstHHI | GCGC | 2 cut(s) | 112, 316 |
| BstKTI | GATC | 4 cut(s) | 42, 61, 382, 386 |
| BstMAI | GTCTC | 2 cut(s) | 116, 359 |
| BstMBI | GATC | 4 cut(s) | 39, 58, 379, 383 |
| BstMCI | CGRYCG | 1 cut(s) | 73 |
| BstNI | CCWGG | 2 cut(s) | 56, 212 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 50 |
| BstSCI | CCNGG | 2 cut(s) | 54, 210 |
| BstSLI | GKGCMC | 1 cut(s) | 253 |
| BstV1I | GCAGC | 2 cut(s) | 218, 354 |
| Bsu15I | ATCGAT | 1 cut(s) | 382 |
| BsuRI | GGCC | 2 cut(s) | 230, 251 |
| BsuTUI | ATCGAT | 1 cut(s) | 382 |
| BtsCI | GGATG | 1 cut(s) | 31 |
| Cac8I | GCNNGC | 3 cut(s) | 204, 260, 372 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| CciI | TCATGA | 1 cut(s) | 42 |
| CfoI | GCGC | 2 cut(s) | 112, 316 |
| Cfr13I | GGNCC | 4 cut(s) | 52, 229, 249, 250 |
| ClaI | ATCGAT | 1 cut(s) | 382 |
| Csp6I | GTAC | 2 cut(s) | 67, 332 |
| CviAII | CATG | 2 cut(s) | 43, 80 |
| CviJI | RGCY | 8 cut(s) | 202, 209, 230, 251, 293, 338, 367, 408 |
| CviKI_1 | RGCY | 8 cut(s) | 202, 209, 230, 251, 293, 338, 367, 408 |
| CviQI | GTAC | 2 cut(s) | 67, 332 |
| DdeI | CTNAG | 3 cut(s) | 48, 294, 340 |
| DpnI | GATC | 4 cut(s) | 41, 60, 381, 385 |
| DpnII | GATC | 4 cut(s) | 39, 58, 379, 383 |
| Eam1104I | CTCTTC | 1 cut(s) | 139 |
| EarI | CTCTTC | 1 cut(s) | 139 |
| EciI | GGCGGA | 1 cut(s) | 287 |
| Eco24I | GRGCYC | 1 cut(s) | 253 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| Eco47I | GGWCC | 1 cut(s) | 52 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 1 cut(s) | 20 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 173 |
| EcoO109I | RGGNCCY | 2 cut(s) | 52, 249 |
| EcoRII | CCWGG | 2 cut(s) | 54, 210 |
| EcoT38I | GRGCYC | 1 cut(s) | 253 |
| Esp3I | CGTCTC | 1 cut(s) | 116 |
| FaeI | CATG | 2 cut(s) | 46, 83 |
| FaiI | YATR | 6 cut(s) | 44, 81, 101, 264, 266, 326 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 186, 218 |
| FatI | CATG | 2 cut(s) | 42, 79 |
| Fnu4HI | GCNGC | 2 cut(s) | 207, 368 |
| FokI | GGATG | 1 cut(s) | 38 |
| FriOI | GRGCYC | 1 cut(s) | 253 |
| Fsp4HI | GCNGC | 2 cut(s) | 207, 368 |
| FspBI | CTAG | 1 cut(s) | 445 |
| GlaI | GCGC | 2 cut(s) | 111, 315 |
| GluI | GCNGC | 2 cut(s) | 207, 368 |
| GsaI | CCCAGC | 1 cut(s) | 408 |
| HaeIII | GGCC | 2 cut(s) | 230, 251 |
| HapII | CCGG | 1 cut(s) | 351 |
| HhaI | GCGC | 2 cut(s) | 112, 316 |
| Hin1I | GRCGYC | 1 cut(s) | 9 |
| Hin1II | CATG | 2 cut(s) | 46, 83 |
| Hin6I | GCGC | 2 cut(s) | 110, 314 |
| HinP1I | GCGC | 2 cut(s) | 110, 314 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HpaII | CCGG | 1 cut(s) | 351 |
| HphI | GGTGA | 1 cut(s) | 406 |
| Hpy166II | GTNNAC | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 1 cut(s) | 39 |
| Hpy188III | TCNNGA | 2 cut(s) | 43, 119 |
| Hpy8I | GTNNAC | 1 cut(s) | 163 |
| Hpy99I | CGWCG | 1 cut(s) | 78 |
| HpyAV | CCTTC | 3 cut(s) | 100, 166, 404 |
| HpyCH4III | ACNGT | 1 cut(s) | 71 |
| HpyCH4IV | ACGT | 1 cut(s) | 9 |
| HpyCH4V | TGCA | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 294, 340 |
| HpySE526I | ACGT | 1 cut(s) | 9 |
| Hsp92I | GRCGYC | 1 cut(s) | 9 |
| Hsp92II | CATG | 2 cut(s) | 46, 83 |
| HspAI | GCGC | 2 cut(s) | 110, 314 |
| Kzo9I | GATC | 4 cut(s) | 39, 58, 379, 383 |
| Lsp1109I | GCAGC | 2 cut(s) | 218, 354 |
| MaeI | CTAG | 1 cut(s) | 445 |
| MaeII | ACGT | 1 cut(s) | 9 |
| MaeIII | GTNAC | 2 cut(s) | 10, 181 |
| MalI | GATC | 4 cut(s) | 41, 60, 381, 385 |
| MboI | GATC | 4 cut(s) | 39, 58, 379, 383 |
| MboII | GAAGA | 2 cut(s) | 126, 129 |
| MhlI | GDGCHC | 1 cut(s) | 253 |
| MnlI | CCTC | 9 cut(s) | 16, 43, 142, 151, 169, 240, 303, 411, 422 |
| MspA1I | CMGCKG | 1 cut(s) | 367 |
| MspI | CCGG | 1 cut(s) | 351 |
| MspR9I | CCNGG | 2 cut(s) | 56, 212 |
| MvaI | CCWGG | 2 cut(s) | 56, 212 |
| NdeII | GATC | 4 cut(s) | 39, 58, 379, 383 |
| NlaIII | CATG | 2 cut(s) | 46, 83 |
| NlaIV | GGNNCC | 2 cut(s) | 130, 251 |
| NmuCI | GTSAC | 2 cut(s) | 10, 181 |
| PagI | TCATGA | 1 cut(s) | 42 |
| PfoI | TCCNGGA | 1 cut(s) | 54 |
| PkrI | GCNGC | 2 cut(s) | 208, 369 |
| PpuMI | RGGWCCY | 1 cut(s) | 52 |
| PshAI | GACNNNNGTC | 1 cut(s) | 50 |
| Psp5II | RGGWCCY | 1 cut(s) | 52 |
| Psp6I | CCWGG | 2 cut(s) | 54, 210 |
| PspFI | CCCAGC | 1 cut(s) | 404 |
| PspGI | CCWGG | 2 cut(s) | 54, 210 |
| PspN4I | GGNNCC | 2 cut(s) | 130, 251 |
| PspOMI | GGGCCC | 1 cut(s) | 249 |
| PspPI | GGNCC | 4 cut(s) | 52, 229, 249, 250 |
| PspPPI | RGGWCCY | 1 cut(s) | 52 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| PvuII | CAGCTG | 1 cut(s) | 367 |
| RsaI | GTAC | 2 cut(s) | 68, 333 |
| RsaNI | GTAC | 2 cut(s) | 67, 332 |
| SatI | GCNGC | 2 cut(s) | 207, 368 |
| Sau3AI | GATC | 4 cut(s) | 39, 58, 379, 383 |
| Sau96I | GGNCC | 4 cut(s) | 52, 229, 249, 250 |
| ScrFI | CCNGG | 2 cut(s) | 56, 212 |
| SduI | GDGCHC | 1 cut(s) | 253 |
| SinI | GGWCC | 1 cut(s) | 52 |
| SsiI | CCGC | 1 cut(s) | 272 |
| SspMI | CTAG | 1 cut(s) | 445 |
| StyD4I | CCNGG | 2 cut(s) | 54, 210 |
| TaaI | ACNGT | 1 cut(s) | 71 |
| TaiI | ACGT | 1 cut(s) | 12 |
| TaqI | TCGA | 3 cut(s) | 146, 382, 397 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TseFI | GTSAC | 2 cut(s) | 10, 181 |
| TseI | GCWGC | 2 cut(s) | 206, 367 |
| Tsp45I | GTSAC | 2 cut(s) | 10, 181 |
| VpaK11BI | GGWCC | 1 cut(s) | 52 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 173 |
| XspI | CTAG | 1 cut(s) | 445 |
| ZraI | GACGTC | 1 cut(s) | 10 |