MD11G1134000.v1.1

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000260
Physical Location & Seq
Forward (+)
12289342 .. 12290530
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1134000.v1.1.491

Sequence Viewer

Length: 261 bp
ATGACGACTGCACCCTATTCGATTCTCCCACCTCCTACTTCAGCCGCCATTACTCCAACAGAAATGGACCCCAGGCCGGTTGATCCGGTTGGTCCCCGGGTCTCCCATGCGCCGATGTCATCAGCCTCTTCAATGGCACTATCTGTTAGCGCCAGGTGTGGTCACCGCCGCCCCCGCACACCCGACATGACATCGACATCCACTACTAATGCCTCGAGGTCACAACAAGCAAAGAAAAATAGCCGGGGACCTTGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

87

Amino Acids

9.09

Weight (kDa)

11.19

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 214
AciI CCGC 4 cut(s) 45, 166, 169, 175
AclWI GGATC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 132
AjnI CCWGG 2 cut(s) 71, 152
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 2 cut(s) 96, 214
AoxI GGCC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 112, 152
AspS9I GGNCC 3 cut(s) 67, 92, 248
AsuC2I CCSGG 3 cut(s) 97, 98, 245
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 2 cut(s) 96, 214
AvaII GGWCC 3 cut(s) 67, 92, 248
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 73, 154
BcnI CCSGG 3 cut(s) 97, 98, 245
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 259
BfoI RGCGCY 1 cut(s) 153
BisI GCNGC 2 cut(s) 45, 169
BlsI GCNGC 2 cut(s) 46, 170
Bme1390I CCNGG 5 cut(s) 73, 97, 98, 154, 245
Bme18I GGWCC 3 cut(s) 67, 92, 248
BmeT110I CYCGRG 2 cut(s) 96, 214
BmgT120I GGNCC 3 cut(s) 67, 92, 248
BmiI GGNNCC 3 cut(s) 69, 94, 249
BmrFI CCNGG 5 cut(s) 73, 97, 98, 154, 245
BpuMI CCSGG 3 cut(s) 97, 98, 245
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 4 cut(s) 71, 95, 96, 244
BsaWI WCCGGW 1 cut(s) 85
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 76
BseBI CCWGG 2 cut(s) 73, 154
BseDI CCNNGG 4 cut(s) 71, 95, 96, 244
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 1 cut(s) 76
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 2 cut(s) 96, 214
BsiSI CCGG 4 cut(s) 77, 86, 97, 244
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 2 cut(s) 96, 214
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 4 cut(s) 45, 166, 169, 175
BspANI GGCC 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 69, 94, 249
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 4 cut(s) 71, 95, 96, 244
BssMI GATC 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 73, 154
Bst6I CTCTTC 1 cut(s) 133
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 112, 152
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 2 cut(s) 73, 154
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 5 cut(s) 71, 95, 96, 152, 243
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 197
CfoI GCGC 2 cut(s) 112, 152
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 3 cut(s) 67, 92, 248
Cfr9I CCCGGG 1 cut(s) 96
CviAII CATG 2 cut(s) 107, 187
CviJI RGCY 4 cut(s) 44, 76, 125, 243
CviKI_1 RGCY 4 cut(s) 44, 76, 125, 243
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 3 cut(s) 67, 92, 248
Eco57I CTGAAG 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 96, 214
Eco91I GGTNACC 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 248
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 71, 152
FaeI CATG 2 cut(s) 110, 190
FaiI YATR 2 cut(s) 108, 188
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 106, 186
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 45, 169
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 45, 169
FspBI CTAG 1 cut(s) 259
GlaI GCGC 2 cut(s) 111, 151
GluI GCNGC 2 cut(s) 45, 169
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 76
HapII CCGG 4 cut(s) 77, 86, 97, 244
HhaI GCGC 2 cut(s) 112, 152
Hin1II CATG 2 cut(s) 110, 190
Hin6I GCGC 2 cut(s) 110, 150
HinP1I GCGC 2 cut(s) 110, 150
HinfI GANTC 1 cut(s) 22
HpaII CCGG 4 cut(s) 77, 86, 97, 244
HphI GGTGA 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 110, 190
HspAI GCGC 2 cut(s) 110, 150
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 8 cut(s) 58, 85, 90, 99, 110, 139, 166, 257
MaeI CTAG 1 cut(s) 259
MaeIII GTNAC 2 cut(s) 161, 219
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 80
MnlI CCTC 4 cut(s) 42, 136, 210, 223
MspI CCGG 4 cut(s) 77, 86, 97, 244
MspR9I CCNGG 5 cut(s) 73, 97, 98, 154, 245
MvaI CCWGG 2 cut(s) 73, 154
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 3 cut(s) 97, 98, 245
NdeII GATC 1 cut(s) 82
NlaIII CATG 2 cut(s) 110, 190
NlaIV GGNNCC 3 cut(s) 69, 94, 249
NmuCI GTSAC 2 cut(s) 161, 219
PaeR7I CTCGAG 1 cut(s) 214
PfeI GAWTC 1 cut(s) 22
PflFI GACNNNGTC 1 cut(s) 252
PkrI GCNGC 2 cut(s) 46, 170
PpuMI RGGWCCY 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 71, 152
PspEI GGTNACC 1 cut(s) 161
PspGI CCWGG 2 cut(s) 71, 152
PspN4I GGNNCC 3 cut(s) 69, 94, 249
PspPI GGNCC 3 cut(s) 67, 92, 248
PspPPI RGGWCCY 1 cut(s) 248
PspXI VCTCGAGB 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 252
SatI GCNGC 2 cut(s) 45, 169
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 3 cut(s) 67, 92, 248
ScrFI CCNGG 5 cut(s) 73, 97, 98, 154, 245
SetI ASST 4 cut(s) 34, 158, 221, 253
Sfr274I CTCGAG 1 cut(s) 214
SinI GGWCC 3 cut(s) 67, 92, 248
SlaI CTCGAG 1 cut(s) 214
SmaI CCCGGG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SsiI CCGC 4 cut(s) 45, 166, 169, 175
SspMI CTAG 1 cut(s) 259
StyD4I CCNGG 5 cut(s) 71, 95, 96, 152, 243
TaqI TCGA 3 cut(s) 20, 194, 215
TauI GCSGC 2 cut(s) 47, 171
TfiI GAWTC 1 cut(s) 22
TseFI GTSAC 2 cut(s) 161, 219
Tsp45I GTSAC 2 cut(s) 161, 219
TspMI CCCGGG 1 cut(s) 96
Tth111I GACNNNGTC 1 cut(s) 252
VpaK11BI GGWCC 3 cut(s) 67, 92, 248
XhoI CTCGAG 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 96
XspI CTAG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.