pycom08g14690

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
14073952 .. 14074478
527 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14690.1

Sequence Viewer

Length: 300 bp
ATGACAGCCTCACCGGAGCCTTCTGATCACACTTCCTCAGCATCCAGAGTCGAGAGTAAGGCCTCCCAGCCAGCCAAAAAAAACACCAGAGGGCCTAATCGAATGCTGAAGCTGGCACAAAGCGTATGTCAGACCGCTTCCAAGATCAAGATTGCGTATGACTCGCGATATCTTGGGGTGGCTACCTTACAGCAACATAGCAGTGTCATTAGTAGCTGTGGAGTTGTTATTCAACAAAATTTTCCTGTGCAGTGGCAGTTTTGGGCAGAAATTCCTAAGGAGATGAAGAAACTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

9.8

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AciI CCGC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 238, 270
AcuI CTGAAG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 233
AhlI ACTAGT 1 cut(s) 292
AluBI AGCT 2 cut(s) 112, 216
AluI AGCT 2 cut(s) 112, 216
AoxI GGCC 2 cut(s) 60, 92
ApoI RAATTY 2 cut(s) 238, 270
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspS9I GGNCC 1 cut(s) 92
AsuHPI GGTGA 1 cut(s) 3
AxyI CCTNAGG 1 cut(s) 276
BbvCI CCTCAGC 1 cut(s) 37
BclI TGATCA 1 cut(s) 25
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 13
Bse21I CCTNAGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 62, 94
BsiSI CCGG 1 cut(s) 14
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 2 cut(s) 62, 94
Bsp143I GATC 2 cut(s) 25, 144
Bsp68I TCGCGA 1 cut(s) 166
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 62, 94
BspCNI CTCAG 1 cut(s) 50
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 18
BssMI GATC 2 cut(s) 25, 144
BstC8I GCNNGC 2 cut(s) 72, 114
BstDEI CTNAG 2 cut(s) 37, 276
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 2 cut(s) 28, 147
BstMBI GATC 2 cut(s) 25, 144
BstUI CGCG 1 cut(s) 166
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 2 cut(s) 62, 94
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 2 cut(s) 208, 257
BtsIMutI CAGTG 2 cut(s) 208, 257
BtuMI TCGCGA 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 72, 114
Cfr13I GGNCC 1 cut(s) 92
CviJI RGCY 9 cut(s) 8, 19, 62, 70, 74, 94, 112, 182, 216
CviKI_1 RGCY 9 cut(s) 8, 19, 62, 70, 74, 94, 112, 182, 216
DdeI CTNAG 2 cut(s) 37, 276
DpnI GATC 2 cut(s) 27, 146
DpnII GATC 2 cut(s) 25, 144
Eco147I AGGCCT 1 cut(s) 62
Eco32I GATATC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 92
EcoRV GATATC 1 cut(s) 170
FaiI YATR 4 cut(s) 127, 159, 198, 298
FbaI TGATCA 1 cut(s) 25
FokI GGATG 1 cut(s) 28
FspBI CTAG 1 cut(s) 293
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 62, 94
HapII CCGG 1 cut(s) 14
HinfI GANTC 2 cut(s) 48, 161
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 3
Hpy188I TCNGA 2 cut(s) 25, 132
Hpy188III TCNNGA 4 cut(s) 45, 52, 148, 165
HpyAV CCTTC 1 cut(s) 30
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 2 cut(s) 37, 276
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 144
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 27, 58, 80, 84, 98, 100, 258
LweI GCATC 1 cut(s) 50
MaeI CTAG 1 cut(s) 293
MalI GATC 2 cut(s) 27, 146
MboI GATC 2 cut(s) 25, 144
MboII GAAGA 1 cut(s) 298
MluCI AATT 2 cut(s) 238, 270
MlyI GAGTC 2 cut(s) 57, 155
MnlI CCTC 4 cut(s) 19, 46, 73, 83
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 108
MvnI CGCG 1 cut(s) 166
NdeII GATC 2 cut(s) 25, 144
NlaIV GGNNCC 1 cut(s) 18
NruI TCGCGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 62
PctI GAATGC 1 cut(s) 108
PleI GAGTC 2 cut(s) 56, 155
PpsI GAGTC 2 cut(s) 56, 155
PspFI CCCAGC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 92
RruI TCGCGA 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 201
Sau3AI GATC 2 cut(s) 25, 144
Sau96I GGNCC 1 cut(s) 92
SchI GAGTC 2 cut(s) 57, 155
SetI ASST 3 cut(s) 114, 188, 218
SfaNI GCATC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 201
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 2 cut(s) 238, 270
SseBI AGGCCT 1 cut(s) 62
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 293
StuI AGGCCT 1 cut(s) 62
TaqI TCGA 2 cut(s) 51, 100
TasI AATT 2 cut(s) 238, 270
TscAI CASTG 2 cut(s) 208, 257
TspDTI ATGAA 1 cut(s) 299
TspRI CASTG 2 cut(s) 208, 257
XapI RAATTY 2 cut(s) 238, 270
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.