pycom04g07430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000260
Physical Location & Seq
Reverse (-)
7977054 .. 7979266
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g07430.1

Sequence Viewer

Length: 897 bp
ATGCTTTTCTTTTTTCTATTAGTATGCATTGAATTTTTTTTCCTAATTGTGCAGATGTTGCACCTTATTAGAAGTCGTAAGGAGGTGACGACTGCACCCAGTTCGATTCCCCTGCCTCCTACTATAGCCGCCACTGCTCTAGTAAAAATGGACCCCAGACCGGCTAATTCGTTAGATCCGGTTGATCCTCGGGTCTCCTATATGCCAGCATCATCAGACTCTTCAATGGCACTACCTGCTAGTGCCAGGCGTGGTCACCGCCGCCCTCGCACGCCTGACACGACATCGGCATCCACTACTGATGCCTCAAGGTCACAACCAACAAAGAAAAATACATGGGGACCTTGTAGCCAGTTGAAGACGACGAAGGTCACCCGAATGACCAACAAACGTATCACGATCAAATACAACAACCGGCATCGGGCTGCACCAACTGCGGAGCAGCATAGCGCATTGGCCCACGACATTGGTCACGTCATTCGAACTTATTGCCCTATGCAATGGAAGTCTTGGAAGGTGATGACGGACGAGGTGTGGACAAAGGTCGCTCTTGAGGAGGGTTGCCCGAAGGAGTTTAAGGACCGAGAAGATAATTGGGCGTGGCTCTGCAGTCATTTTCAGGAGCCCGACTATGTGAAGAAGGCGAAAGCCAACAAGGGCAATCGGGAGAAGAAGACTCTTCTGCACCATTCTAATTCGAGGCCCTTCTCATATAAAGATGGAGGCACGACGGCAGGTAATAATAAAGTTTTTCGTCCCCCGTCGACATCCAAGCCCCTCCAACCCAAGCATGCCCACAACTCTGCCCCTTCGACATTTGAGCCTGTCCACAACCTCGAGACCTTCCAGCCGCCTCCGAATGACGACCTCGTAGATTACGCCTCATTATTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

299

Amino Acids

33.68

Weight (kDa)

9.7

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 244, 725
AccI GTMKAC 1 cut(s) 764
AciI CCGC 5 cut(s) 129, 259, 262, 437, 851
AclWI GGATC 2 cut(s) 170, 179
AcsI RAATTY 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 160, 421
AgsI TTSAA 3 cut(s) 32, 225, 358
AjiI CACGTC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 199, 833
AlwI GGATC 2 cut(s) 170, 179
Ama87I CYCGRG 2 cut(s) 189, 836
AoxI GGCC 2 cut(s) 456, 701
ApeKI GCWGC 2 cut(s) 425, 442
ApoI RAATTY 1 cut(s) 32
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 5 cut(s) 151, 341, 457, 580, 702
AsuHPI GGTGA 4 cut(s) 97, 248, 364, 529
AsuII TTCGAA 1 cut(s) 481
AvaI CYCGRG 2 cut(s) 189, 836
AvaII GGWCC 3 cut(s) 151, 341, 580
BaeI ACNNNNGTAYC 2 cut(s) 376, 409
BanII GRGCYC 1 cut(s) 627
BbsI GAAGAC 2 cut(s) 365, 680
BbvI GCAGC 2 cut(s) 412, 454
BccI CCATC 1 cut(s) 713
BceAI ACGGC 1 cut(s) 747
BcgI CGANNNNNNTGC 6 cut(s) 84, 94, 118, 128, 471, 505
BciT130I CCWGG 1 cut(s) 247
BcoDI GTCTC 2 cut(s) 199, 833
BfaI CTAG 2 cut(s) 140, 240
BfmI CTRYAG 2 cut(s) 123, 607
BfuAI ACCTGC 2 cut(s) 244, 725
BisI GCNGC 5 cut(s) 129, 262, 426, 443, 851
BlsI GCNGC 5 cut(s) 130, 263, 427, 444, 852
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 3 cut(s) 151, 341, 580
BmeT110I CYCGRG 2 cut(s) 189, 836
BmgBI CACGTC 1 cut(s) 475
BmgT120I GGNCC 5 cut(s) 151, 341, 457, 580, 702
BmiI GGNNCC 3 cut(s) 153, 342, 624
BmrFI CCNGG 1 cut(s) 247
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 4 cut(s) 218, 292, 299, 427
BmuI ACTGGG 1 cut(s) 93
BoxI GACNNNNGTC 3 cut(s) 368, 468, 542
BpiI GAAGAC 2 cut(s) 365, 680
Bpu14I TTCGAA 1 cut(s) 481
BpuEI CTTGAG 2 cut(s) 292, 572
BsaI GGTCTC 2 cut(s) 199, 833
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 421
Bse118I RCCGGY 2 cut(s) 160, 414
Bse1I ACTGG 2 cut(s) 99, 352
Bse3DI GCAATG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 188
BseGI GGATG 2 cut(s) 290, 767
BseLI CCNNNNNNNGG 2 cut(s) 160, 421
BseMI GCAATG 1 cut(s) 506
BseNI ACTGG 2 cut(s) 99, 352
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 2 cut(s) 412, 454
BsgI GTGCAG 4 cut(s) 71, 78, 411, 668
BshFI GGCC 2 cut(s) 458, 703
BsiHKCI CYCGRG 2 cut(s) 189, 836
BsiSI CCGG 3 cut(s) 161, 179, 415
BslFI GGGAC 2 cut(s) 354, 741
BslI CCNNNNNNNGG 2 cut(s) 160, 421
BsmAI GTCTC 2 cut(s) 199, 833
BsmFI GGGAC 2 cut(s) 354, 741
BsnI GGCC 2 cut(s) 458, 703
Bso31I GGTCTC 2 cut(s) 199, 833
BsoBI CYCGRG 2 cut(s) 189, 836
Bsp119I TTCGAA 1 cut(s) 481
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 3 cut(s) 175, 184, 399
BspACI CCGC 5 cut(s) 129, 259, 262, 437, 851
BspANI GGCC 2 cut(s) 458, 703
BspLI GGNNCC 3 cut(s) 153, 342, 624
BspMAI CTGCAG 1 cut(s) 611
BspMI ACCTGC 2 cut(s) 244, 725
BspPI GGATC 2 cut(s) 170, 179
BspT104I TTCGAA 1 cut(s) 481
BspTNI GGTCTC 2 cut(s) 199, 833
BsrDI GCAATG 1 cut(s) 506
BsrFI RCCGGY 2 cut(s) 160, 414
BsrI ACTGG 2 cut(s) 99, 352
BssAI RCCGGY 2 cut(s) 160, 414
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 175, 184, 399
Bst2UI CCWGG 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 226, 684
BstAPI GCANNNNNTGC 3 cut(s) 58, 236, 434
BstBI TTCGAA 1 cut(s) 481
BstC8I GCNNGC 3 cut(s) 207, 272, 792
BstDEI CTNAG 1 cut(s) 894
BstEII GGTNACC 2 cut(s) 254, 370
BstF5I GGATG 2 cut(s) 290, 767
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 3 cut(s) 178, 187, 402
BstMAI GTCTC 2 cut(s) 199, 833
BstMBI GATC 3 cut(s) 175, 184, 399
BstMWI GCNNNNNNNGC 5 cut(s) 58, 134, 236, 267, 434
BstNI CCWGG 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 794
BstPAI GACNNNNGTC 3 cut(s) 368, 468, 542
BstPI GGTNACC 2 cut(s) 254, 370
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 2 cut(s) 123, 607
BstV1I GCAGC 2 cut(s) 412, 454
BstV2I GAAGAC 2 cut(s) 365, 680
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 467
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 2 cut(s) 458, 703
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 2 cut(s) 290, 767
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 2 cut(s) 244, 725
Cac8I GCNNGC 3 cut(s) 207, 272, 792
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 2 cut(s) 160, 414
Cfr13I GGNCC 5 cut(s) 151, 341, 457, 580, 702
CviAII CATG 2 cut(s) 336, 791
DdeI CTNAG 1 cut(s) 894
DpnI GATC 3 cut(s) 177, 186, 401
DpnII GATC 3 cut(s) 175, 184, 399
Eam1104I CTCTTC 2 cut(s) 226, 684
EarI CTCTTC 2 cut(s) 226, 684
Eco24I GRGCYC 1 cut(s) 627
Eco31I GGTCTC 2 cut(s) 199, 833
Eco47I GGWCC 3 cut(s) 151, 341, 580
Eco88I CYCGRG 2 cut(s) 189, 836
Eco91I GGTNACC 2 cut(s) 254, 370
EcoO109I RGGNCCY 2 cut(s) 341, 702
EcoO65I GGTNACC 2 cut(s) 254, 370
EcoRII CCWGG 1 cut(s) 245
EcoT22I ATGCAT 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 627
FaeI CATG 2 cut(s) 339, 794
FaqI GGGAC 2 cut(s) 354, 741
FatI CATG 2 cut(s) 335, 790
FblI GTMKAC 1 cut(s) 764
Fnu4HI GCNGC 5 cut(s) 129, 262, 426, 443, 851
FokI GGATG 2 cut(s) 277, 754
FriOI GRGCYC 1 cut(s) 627
Fsp4HI GCNGC 5 cut(s) 129, 262, 426, 443, 851
FspBI CTAG 2 cut(s) 140, 240
GlaI GCGC 1 cut(s) 451
GluI GCNGC 5 cut(s) 129, 262, 426, 443, 851
HaeIII GGCC 2 cut(s) 458, 703
HapII CCGG 3 cut(s) 161, 179, 415
HhaI GCGC 1 cut(s) 452
Hin1II CATG 2 cut(s) 339, 794
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 765
HindII GTYRAC 1 cut(s) 765
HinfI GANTC 3 cut(s) 106, 218, 676
HpaII CCGG 3 cut(s) 161, 179, 415
HphI GGTGA 4 cut(s) 97, 248, 364, 529
Hpy166II GTNNAC 3 cut(s) 537, 765, 829
Hpy188I TCNGA 2 cut(s) 217, 858
Hpy188III TCNNGA 5 cut(s) 397, 551, 620, 665, 838
Hpy8I GTNNAC 3 cut(s) 537, 765, 829
Hpy99I CGWCG 3 cut(s) 367, 733, 766
HpyAV CCTTC 7 cut(s) 361, 508, 562, 634, 715, 819, 853
HpyCH4IV ACGT 2 cut(s) 391, 474
HpyCH4V TGCA 8 cut(s) 27, 52, 61, 95, 428, 499, 609, 685
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 134, 236, 267, 434
HpyF3I CTNAG 1 cut(s) 894
HpySE526I ACGT 2 cut(s) 391, 474
Hsp92II CATG 2 cut(s) 339, 794
HspAI GCGC 1 cut(s) 450
Kzo9I GATC 3 cut(s) 175, 184, 399
LmnI GCTCC 2 cut(s) 439, 622
Lsp1109I GCAGC 2 cut(s) 412, 454
LweI GCATC 4 cut(s) 218, 292, 299, 427
MaeI CTAG 2 cut(s) 140, 240
MaeII ACGT 2 cut(s) 391, 474
MaeIII GTNAC 5 cut(s) 85, 254, 312, 370, 470
MalI GATC 3 cut(s) 177, 186, 401
MboI GATC 3 cut(s) 175, 184, 399
MboII GAAGA 7 cut(s) 213, 370, 599, 649, 671, 682, 685
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 5 cut(s) 32, 45, 166, 592, 694
MlyI GAGTC 2 cut(s) 212, 670
MmeI TCCRAC 1 cut(s) 805
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 3 cut(s) 161, 179, 415
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 5 cut(s) 58, 134, 236, 267, 434
NdeII GATC 3 cut(s) 175, 184, 399
NlaIII CATG 2 cut(s) 339, 794
NlaIV GGNNCC 3 cut(s) 153, 342, 624
NmuCI GTSAC 5 cut(s) 85, 254, 312, 370, 470
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 794
NspV TTCGAA 1 cut(s) 481
PaeI GCATGC 1 cut(s) 794
PaeR7I CTCGAG 1 cut(s) 836
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 5 cut(s) 130, 263, 427, 444, 852
PleI GAGTC 2 cut(s) 212, 670
PpsI GAGTC 2 cut(s) 212, 670
PpuMI RGGWCCY 1 cut(s) 341
PshAI GACNNNNGTC 3 cut(s) 368, 468, 542
Psp5II RGGWCCY 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 245
PspEI GGTNACC 2 cut(s) 254, 370
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 153, 342, 624
PspPI GGNCC 5 cut(s) 151, 341, 457, 580, 702
PspPPI RGGWCCY 1 cut(s) 341
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 377
SalI GTCGAC 1 cut(s) 763
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 5 cut(s) 129, 262, 426, 443, 851
Sau3AI GATC 3 cut(s) 175, 184, 399
Sau96I GGNCC 5 cut(s) 151, 341, 457, 580, 702
SchI GAGTC 2 cut(s) 212, 670
ScrFI CCNGG 1 cut(s) 247
SduI GDGCHC 1 cut(s) 627
SfaNI GCATC 4 cut(s) 218, 292, 299, 427
SfcI CTRYAG 2 cut(s) 123, 607
Sfr274I CTCGAG 1 cut(s) 836
SfuI TTCGAA 1 cut(s) 481
SinI GGWCC 3 cut(s) 151, 341, 580
SlaI CTCGAG 1 cut(s) 836
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 3 cut(s) 307, 551, 836
SmoI CTYRAG 3 cut(s) 307, 551, 836
SphI GCATGC 1 cut(s) 794
Sse9I AATT 5 cut(s) 32, 45, 166, 592, 694
SsiI CCGC 5 cut(s) 129, 259, 262, 437, 851
SspMI CTAG 2 cut(s) 140, 240
StyD4I CCNGG 1 cut(s) 245
TaiI ACGT 2 cut(s) 394, 477
TaqI TCGA 6 cut(s) 104, 481, 698, 764, 812, 837
TaqII GACCGA 1 cut(s) 597
TasI AATT 5 cut(s) 32, 45, 166, 592, 694
TauI GCSGC 3 cut(s) 131, 264, 853
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 5 cut(s) 85, 254, 312, 370, 470
TseI GCWGC 2 cut(s) 425, 442
Tsp45I GTSAC 5 cut(s) 85, 254, 312, 370, 470
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 3 cut(s) 151, 341, 580
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 794
XhoI CTCGAG 1 cut(s) 836
XmiI GTMKAC 1 cut(s) 764
XspI CTAG 2 cut(s) 140, 240
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.