pycom14g10410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000260
Physical Location & Seq
Forward (+)
13058000 .. 13058263
264 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10410.1

Sequence Viewer

Length: 264 bp
ATGGTACCCGAGGATGTAGGTTTTCAGATCATGATTGATGTCTTGGATCAGAACTTTGGTCGTTGTCGTGGCAAGATTGTTCGGGGTATGGGCAAAGCGCGGATTCGTGAGACAGGTGCTTCTTCTTCCAGATCGAACACAGCAGAGGTTGATGCATTGAAGGAGGAAGTGACAACCTTAAAGGTTCAGCTTGCGATCCAGGAAGAGCAGATGAGGGCCCAGGGCGAACAGATGAGGGCACAGGTGATGGCTCAGAGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

88

Amino Acids

9.68

Weight (kDa)

5.5

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 100
AclWI GGATC 2 cut(s) 54, 190
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 198, 219
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 2 cut(s) 54, 190
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 1 cut(s) 216
ApaI GGGCCC 1 cut(s) 220
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 216, 217
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 8
BaeGI GKGCMC 2 cut(s) 220, 241
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 220
BccI CCATC 1 cut(s) 241
BciT130I CCWGG 2 cut(s) 200, 221
BcoDI GTCTC 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 200, 221
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 216, 217
BmiI GGNNCC 2 cut(s) 6, 218
BmrFI CCNGG 2 cut(s) 200, 221
BmsI GCATC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 9, 219, 220
BseBI CCWGG 2 cut(s) 200, 221
BseDI CCNNGG 3 cut(s) 9, 219, 220
BseGI GGATG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 220, 241
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 8
Bsp120I GGGCCC 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 220, 241
Bsp143I GATC 4 cut(s) 27, 46, 131, 195
BspACI CCGC 1 cut(s) 100
BspANI GGCC 1 cut(s) 218
BspFNI CGCG 1 cut(s) 100
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 6, 218
BspPI GGATC 2 cut(s) 54, 190
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 3 cut(s) 9, 219, 220
BssMI GATC 4 cut(s) 27, 46, 131, 195
Bst2UI CCWGG 2 cut(s) 200, 221
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 4 cut(s) 30, 49, 134, 198
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 4 cut(s) 27, 46, 131, 195
BstNI CCWGG 2 cut(s) 200, 221
BstSCI CCNGG 2 cut(s) 198, 219
BstSLI GKGCMC 2 cut(s) 220, 241
BstUI CGCG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 192
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 216, 217
Csp6I GTAC 1 cut(s) 5
CviAII CATG 1 cut(s) 31
CviJI RGCY 3 cut(s) 190, 218, 251
CviKI_1 RGCY 3 cut(s) 190, 218, 251
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 1 cut(s) 252
DpnI GATC 4 cut(s) 29, 48, 133, 197
DpnII GATC 4 cut(s) 27, 46, 131, 195
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 198, 219
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 89
FatI CATG 1 cut(s) 30
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 220
GlaI GCGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 218
HhaI GCGC 1 cut(s) 100
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 3 cut(s) 27, 51, 255
Hpy188III TCNNGA 3 cut(s) 31, 107, 129
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 98
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 4 cut(s) 27, 46, 131, 195
LguI GCTCTTC 1 cut(s) 198
LpnPI CCDG 7 cut(s) 99, 142, 185, 206, 212, 227, 233
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 169
MalI GATC 4 cut(s) 29, 48, 133, 197
MboI GATC 4 cut(s) 27, 46, 131, 195
MboII GAAGA 3 cut(s) 114, 117, 215
MhlI GDGCHC 2 cut(s) 220, 241
MnlI CCTC 5 cut(s) 4, 139, 157, 207, 228
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 200, 221
MvaI CCWGG 2 cut(s) 200, 221
MvnI CGCG 1 cut(s) 100
NdeII GATC 4 cut(s) 27, 46, 131, 195
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 2 cut(s) 6, 218
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 157
PagI TCATGA 1 cut(s) 30
PasI CCCWGGG 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 198, 219
PspGI CCWGG 2 cut(s) 198, 219
PspN4I GGNNCC 2 cut(s) 6, 218
PspOMI GGGCCC 1 cut(s) 216
PspPI GGNCC 2 cut(s) 216, 217
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 179
Sau3AI GATC 4 cut(s) 27, 46, 131, 195
Sau96I GGNCC 2 cut(s) 216, 217
ScrFI CCNGG 2 cut(s) 200, 221
SduI GDGCHC 2 cut(s) 220, 241
SetI ASST 7 cut(s) 22, 118, 150, 179, 186, 192, 246
SfaNI GCATC 1 cut(s) 142
SsiI CCGC 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 198, 219
TaqI TCGA 1 cut(s) 134
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.