pycom06g01740

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
2180985 .. 2181312
328 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01740.1

Sequence Viewer

Length: 228 bp
ATGACGTTAGGTAAAAGTATATTAACTTTGAAATTTTATACAATTTATTTATTATTATTGATTAACATGTTCAAGGACATTTACGTTCGACTTAGTAACGAGACCACTGAGCAGCTTCATGCTACTATGGTGGAAAAGAGCAGTGGTGTTCTCCAAGAAGCAACATCGCAGCTTCCCCCGGAGATCCCGATCAAGGACGTTACGGTACCTAAGGATGTAGGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.47

Weight (kDa)

5.66

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 205
AclWI GGATC 1 cut(s) 178
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 2 cut(s) 31, 73
AluBI AGCT 2 cut(s) 115, 172
AluI AGCT 2 cut(s) 115, 172
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 112, 169
ApoI RAATTY 1 cut(s) 32
Asp718I GGTACC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 210
BanI GGYRCC 1 cut(s) 205
BbvI GCAGC 2 cut(s) 124, 181
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 95
BisI GCNGC 2 cut(s) 113, 170
BlsI GCNGC 2 cut(s) 114, 171
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse21I CCTNAGG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 220
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 124, 181
BshNI GGYRCC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 183, 189
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 2 cut(s) 183, 189
Bst4CI ACNGT 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 92, 108, 210
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 2 cut(s) 186, 192
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 183, 189
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 124, 181
BstX2I RGATCY 1 cut(s) 183
BstYI RGATCY 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 105, 148
Csp6I GTAC 1 cut(s) 206
CviAII CATG 2 cut(s) 67, 119
CviJI RGCY 2 cut(s) 115, 172
CviKI_1 RGCY 2 cut(s) 115, 172
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 3 cut(s) 92, 108, 210
DpnI GATC 2 cut(s) 185, 191
DpnII GATC 2 cut(s) 183, 189
Eco31I GGTCTC 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 210
FaeI CATG 2 cut(s) 70, 122
FaiI YATR 5 cut(s) 20, 39, 68, 120, 128
FatI CATG 2 cut(s) 66, 118
Fnu4HI GCNGC 2 cut(s) 113, 170
Fsp4HI GCNGC 2 cut(s) 113, 170
GluI GCNGC 2 cut(s) 113, 170
HapII CCGG 1 cut(s) 179
Hin1II CATG 2 cut(s) 70, 122
HpaII CCGG 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 3 cut(s) 5, 84, 198
HpyF3I CTNAG 3 cut(s) 92, 108, 210
HpySE526I ACGT 3 cut(s) 5, 84, 198
Hsp92II CATG 2 cut(s) 70, 122
KpnI GGTACC 1 cut(s) 209
Kzo9I GATC 2 cut(s) 183, 189
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 2 cut(s) 124, 181
MaeII ACGT 3 cut(s) 5, 84, 198
MaeIII GTNAC 2 cut(s) 95, 199
MalI GATC 2 cut(s) 185, 191
MboI GATC 2 cut(s) 183, 189
MflI RGATCY 1 cut(s) 183
MluCI AATT 2 cut(s) 32, 42
MseI TTAA 2 cut(s) 23, 63
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 179
NciI CCSGG 1 cut(s) 179
NdeII GATC 2 cut(s) 183, 189
NlaIII CATG 2 cut(s) 70, 122
NlaIV GGNNCC 1 cut(s) 207
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PkrI GCNGC 2 cut(s) 114, 171
PscI ACATGT 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 23, 63
SatI GCNGC 2 cut(s) 113, 170
Sau3AI GATC 2 cut(s) 183, 189
ScrFI CCNGG 1 cut(s) 179
SetI ASST 8 cut(s) 8, 13, 87, 117, 174, 201, 211, 223
SgeI CNNG 9 cut(s) 79, 85, 112, 131, 167, 190, 191, 199, 205
Sse9I AATT 2 cut(s) 32, 42
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 3 cut(s) 8, 87, 201
TaqI TCGA 1 cut(s) 88
TasI AATT 2 cut(s) 32, 42
Tru1I TTAA 2 cut(s) 23, 63
Tru9I TTAA 2 cut(s) 23, 63
TscAI CASTG 2 cut(s) 112, 148
TseI GCWGC 2 cut(s) 112, 169
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 2 cut(s) 112, 148
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.