MD00G1191000.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000260
Physical Location & Seq
Forward (+)
45990710 .. 45991249
540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1191000.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGTGCTACCTGTTAGCGCCCGACGTGCTCACTGGTGCCCCCGCACTCCATACCAGATGTCGCCAACGGGATCCACAACCAATGCCTCCGGTACACAGCTAGCCAAGAAAAACACCTGGGGACCTTGTCGGCAATTGAAGACGGCGAAGGTCACCCGGGTGACCAATGATCGTATCACAATCGGATATGATGAGCGACATCGGACAACACCAATGACGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.36

Weight (kDa)

10.58

Isoelectric Point (pI)

24.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 36
AciI CCGC 1 cut(s) 43
AclWI GGATC 2 cut(s) 66, 79
AfaI GTAC 1 cut(s) 94
AgsI TTSAA 1 cut(s) 139
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 31
AlwI GGATC 2 cut(s) 66, 79
Ama87I CYCGRG 1 cut(s) 156
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 2 cut(s) 157, 158
AsuHPI GGTGA 2 cut(s) 145, 172
AsuNHI GCTAGC 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 2 cut(s) 157, 158
BfaI CTAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 21
Bme1390I CCNGG 3 cut(s) 118, 157, 158
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 156
BmgBI CACGTC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 38, 73, 123
BmrFI CCNGG 3 cut(s) 118, 157, 158
BmtI GCTAGC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 157, 158
BsaJI CCNNGG 2 cut(s) 117, 156
BsaWI WCCGGW 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 117, 156
BseNI ACTGG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 90, 157
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 31, 41
Bsp143I GATC 2 cut(s) 71, 169
BspACI CCGC 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 38, 73, 123
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 2 cut(s) 66, 79
BspT107I GGYRCC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 117, 156
BssMI GATC 2 cut(s) 71, 169
Bst2UI CCWGG 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 102
BstEII GGTNACC 2 cut(s) 151, 160
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 2 cut(s) 74, 172
BstMBI GATC 2 cut(s) 71, 169
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 118
BstPI GGTNACC 2 cut(s) 151, 160
BstSCI CCNGG 3 cut(s) 116, 155, 156
BstSLI GKGCMC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtrI CACGTC 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 122
Cfr9I CCCGGG 1 cut(s) 156
Csp6I GTAC 1 cut(s) 93
CviJI RGCY 2 cut(s) 100, 104
CviKI_1 RGCY 2 cut(s) 100, 104
CviQI GTAC 1 cut(s) 93
DpnI GATC 2 cut(s) 73, 171
DpnII GATC 2 cut(s) 71, 169
Eco47I GGWCC 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 156
Eco91I GGTNACC 2 cut(s) 151, 160
EcoO109I RGGNCCY 1 cut(s) 122
EcoO65I GGTNACC 2 cut(s) 151, 160
EcoRII CCWGG 1 cut(s) 116
FaiI YATR 2 cut(s) 52, 189
FaqI GGGAC 1 cut(s) 135
FauI CCCGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 21
HapII CCGG 2 cut(s) 90, 157
HhaI GCGC 1 cut(s) 20
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HpaII CCGG 2 cut(s) 90, 157
HphI GGTGA 2 cut(s) 145, 172
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 185, 204
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 25
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 71, 169
LpnPI CCDG 7 cut(s) 19, 24, 68, 103, 103, 130, 170
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 151, 160
MalI GATC 2 cut(s) 73, 171
MboI GATC 2 cut(s) 71, 169
MboII GAAGA 1 cut(s) 151
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 31, 41
MluCI AATT 1 cut(s) 134
MnlI CCTC 1 cut(s) 97
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 2 cut(s) 90, 157
MspR9I CCNGG 3 cut(s) 118, 157, 158
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 2 cut(s) 157, 158
NdeII GATC 2 cut(s) 71, 169
NheI GCTAGC 1 cut(s) 100
NlaIV GGNNCC 3 cut(s) 38, 73, 123
NmuCI GTSAC 2 cut(s) 151, 160
OliI CACNNNNGTG 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 116
PspEI GGTNACC 2 cut(s) 151, 160
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 38, 73, 123
PspPI GGNCC 1 cut(s) 122
PspPPI RGGWCCY 1 cut(s) 122
PsuI RGATCY 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 126
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 158
Sau3AI GATC 2 cut(s) 71, 169
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 118, 157, 158
SduI GDGCHC 2 cut(s) 31, 41
SetI ASST 6 cut(s) 13, 28, 102, 119, 127, 153
SinI GGWCC 1 cut(s) 122
SmaI CCCGGG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 1 cut(s) 134
SsiI CCGC 1 cut(s) 43
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 116, 155, 156
TaiI ACGT 1 cut(s) 28
TasI AATT 1 cut(s) 134
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 2 cut(s) 151, 160
Tsp45I GTSAC 2 cut(s) 151, 160
TspMI CCCGGG 1 cut(s) 156
TspRI CASTG 1 cut(s) 38
Tth111I GACNNNGTC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 122
XmaI CCCGGG 1 cut(s) 156
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.