MD05G1285100.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
41902871 .. 41903520
650 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1285100.v1.1.491

Sequence Viewer

Length: 129 bp
ATGCACGGCGGCCTCACCGGCGCCGCCGTGATTCAGAGTCTTCTATTCACAGTTCCTCGTCATCCAGAGTCGAGGATGGGGGCTCCCCTCCAGCTAAAAAAAACACCAGGGGGCCTAATCGAATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

43

Amino Acids

4.41

Weight (kDa)

9.3

Isoelectric Point (pI)

82.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AciI CCGC 2 cut(s) 9, 24
AcyI GRCGYC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AoxI GGCC 2 cut(s) 10, 112
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 7
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 32
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 11, 22
BciT130I CCWGG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 18
BisI GCNGC 2 cut(s) 10, 24
BlsI GCNGC 2 cut(s) 11, 25
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 3 cut(s) 22, 84, 113
BmrFI CCNGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 2 cut(s) 61, 81
BshFI GGCC 2 cut(s) 12, 114
BshNI GGYRCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 2 cut(s) 12, 114
Bsp1286I GDGCHC 1 cut(s) 85
BspACI CCGC 2 cut(s) 9, 24
BspANI GGCC 2 cut(s) 12, 114
BspLI GGNNCC 3 cut(s) 22, 84, 113
BspT107I GGYRCC 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 21
BstF5I GGATG 2 cut(s) 61, 81
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstV2I GAAGAC 1 cut(s) 32
BsuRI GGCC 2 cut(s) 12, 114
BtsCI GGATG 2 cut(s) 61, 81
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 112
CviJI RGCY 4 cut(s) 12, 83, 94, 114
CviKI_1 RGCY 4 cut(s) 12, 83, 94, 114
DinI GGCGCC 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 85
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 85
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 10, 24
FokI GGATG 2 cut(s) 48, 88
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 10, 24
GlaI GCGC 1 cut(s) 22
GluI GCNGC 2 cut(s) 10, 24
GsuI CTGGAG 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 2 cut(s) 12, 114
HapII CCGG 1 cut(s) 18
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 3 cut(s) 31, 37, 68
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 21
HspAI GCGC 1 cut(s) 21
KasI GGCGCC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 31, 78, 93, 104, 120
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 85
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 2 cut(s) 46, 77
MnlI CCTC 4 cut(s) 23, 66, 66, 98
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 18
NarI GGCGCC 1 cut(s) 21
NlaIV GGNNCC 3 cut(s) 22, 84, 113
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 2 cut(s) 11, 25
PleI GAGTC 2 cut(s) 45, 76
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 2 cut(s) 45, 76
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 3 cut(s) 22, 84, 113
PspPI GGNCC 1 cut(s) 112
SatI GCNGC 2 cut(s) 10, 24
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 2 cut(s) 46, 77
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 85
SetI ASST 1 cut(s) 96
SfoI GGCGCC 1 cut(s) 22
SgeI CNNG 9 cut(s) 17, 30, 40, 69, 77, 84, 103, 119, 120
SgrAI CRCCGGYG 1 cut(s) 17
SsiI CCGC 2 cut(s) 9, 24
SspDI GGCGCC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 71, 120
TauI GCSGC 2 cut(s) 12, 26
TfiI GAWTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.