pycom14g10400

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000260
Physical Location & Seq
Forward (+)
13056436 .. 13057160
725 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10400.1

Sequence Viewer

Length: 444 bp
ATGAGTGCTCCATTGATTGGGGAGCTTACACCCCCTGCTGAGGCTACTTTTACGGTGTCCCAGTGGCGTCACTGGCGCCACCGCGAGCCGGAGCCTTCTAATCACACTTCCTCAACATCCAGAGTCAGGGGTGAGGCCTCCCAACCAACTAAAAAAAACACCAGGGGGCCTAGTCGAATGCTGAAGCAGGCACATAGTGCACGTCAGGGTGCCTCCAAGATCAAGATTGCGTATGACTCGCAACATTGTGGAGCGGCTACCTCACAGCAGCATAGCGGTGTCGCTAGTAGCTATGGTGTTGTTGTTAGACAAAATTGTCCTTTCCAGTCGGAGTCTTGGGCAGACATTCCCGAGGAAACGAGGGAACTAGTGCAAGACAAGTTGTCGGTTAGTATATTAATTTTTAGCCTTTATCATTTTTGTAATTTTGTTTACAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

148

Amino Acids

16.51

Weight (kDa)

9.3

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 315
AccB1I GGYRCC 2 cut(s) 75, 209
AccB7I CCANNNNNTGG 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 254
AccII CGCG 1 cut(s) 84
AciI CCGC 3 cut(s) 82, 254, 276
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 2 cut(s) 67, 76
AdeI CACNNNGTG 1 cut(s) 197
AfiI CCNNNNNNNGG 4 cut(s) 17, 40, 88, 126
AhdI GACNNNNNGTC 1 cut(s) 382
AhlI ACTAGT 1 cut(s) 367
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 2 cut(s) 25, 291
AluI AGCT 2 cut(s) 25, 291
Alw21I GWGCWC 2 cut(s) 10, 202
Alw44I GTGCAC 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 350
AoxI GGCC 2 cut(s) 135, 167
ApaLI GTGCAC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 268
AseI ATTAAT 1 cut(s) 398
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 202
BanI GGYRCC 2 cut(s) 75, 209
Bbv12I GWGCWC 2 cut(s) 10, 202
BbvCI CCTCAGC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 163
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 3 cut(s) 171, 285, 368
BfoI RGCGCY 1 cut(s) 79
BisI GCNGC 2 cut(s) 255, 269
BlsI GCNGC 2 cut(s) 256, 270
Bme1390I CCNGG 1 cut(s) 163
BmeRI GACNNNNNGTC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 350
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 4 cut(s) 77, 93, 168, 211
BmrFI CCNGG 1 cut(s) 163
BmrI ACTGGG 1 cut(s) 55
BmuI ACTGGG 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 39
BsaHI GRCGYC 2 cut(s) 67, 76
BsaJI CCNNGG 2 cut(s) 162, 351
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 40, 88, 126
Bse1I ACTGG 3 cut(s) 61, 77, 325
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 162, 351
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 4 cut(s) 17, 40, 88, 126
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 3 cut(s) 61, 77, 325
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 137, 169
BshNI GGYRCC 2 cut(s) 75, 209
BsiHKAI GWGCWC 2 cut(s) 10, 202
BsiHKCI CYCGRG 1 cut(s) 350
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 4 cut(s) 17, 40, 88, 126
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 2 cut(s) 137, 169
BsoBI CYCGRG 1 cut(s) 350
Bsp1286I GDGCHC 2 cut(s) 10, 202
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 3 cut(s) 82, 254, 276
BspANI GGCC 2 cut(s) 137, 169
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 77, 93, 168, 211
BspT107I GGYRCC 2 cut(s) 75, 209
BsrBI CCGCTC 1 cut(s) 254
BsrI ACTGG 3 cut(s) 61, 77, 325
BssECI CCNNGG 2 cut(s) 162, 351
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 2 cut(s) 67, 76
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 55
BstACI GRCGYC 2 cut(s) 67, 76
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 86, 189
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 116
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 2 cut(s) 73, 197
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 137, 169
BtrI CACGTC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 2 cut(s) 68, 70
Cac8I GCNNGC 2 cut(s) 86, 189
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 56
CviJI RGCY 9 cut(s) 25, 44, 88, 94, 137, 169, 257, 291, 408
CviKI_1 RGCY 9 cut(s) 25, 44, 88, 94, 137, 169, 257, 291, 408
DdeI CTNAG 1 cut(s) 39
DinI GGCGCC 1 cut(s) 77
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DraIII CACNNNGTG 1 cut(s) 197
DrdI GACNNNNNNGTC 1 cut(s) 315
DriI GACNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 315
Eam1105I GACNNNNNGTC 1 cut(s) 382
Eco147I AGGCCT 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 77
EheI GGCGCC 1 cut(s) 77
FaiI YATR 5 cut(s) 195, 234, 273, 294, 395
FaqI GGGAC 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 255, 269
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 2 cut(s) 255, 269
FspBI CTAG 3 cut(s) 171, 285, 368
GlaI GCGC 1 cut(s) 77
GluI GCNGC 2 cut(s) 255, 269
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 2 cut(s) 137, 169
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 2 cut(s) 67, 76
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 3 cut(s) 123, 236, 332
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 200, 433
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 3 cut(s) 120, 223, 350
Hpy8I GTNNAC 2 cut(s) 200, 433
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 200, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 197
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 202
Hsp92I GRCGYC 2 cut(s) 67, 76
HspAI GCGC 1 cut(s) 76
KasI GGCGCC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 4 cut(s) 13, 22, 91, 251
Lsp1109I GCAGC 1 cut(s) 280
MaeI CTAG 3 cut(s) 171, 285, 368
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 221
MbiI CCGCTC 1 cut(s) 254
MboI GATC 1 cut(s) 219
MhlI GDGCHC 2 cut(s) 10, 202
MluCI AATT 3 cut(s) 313, 399, 424
Mly113I GGCGCC 1 cut(s) 76
MlyI GAGTC 3 cut(s) 132, 230, 341
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 8 cut(s) 34, 121, 127, 148, 223, 271, 346, 354
MseI TTAA 2 cut(s) 398, 442
MslI CAYNNNNRTG 1 cut(s) 276
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 73, 197
NarI GGCGCC 1 cut(s) 76
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 4 cut(s) 77, 93, 168, 211
NmuCI GTSAC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 137
PctI GAATGC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 2 cut(s) 256, 270
PleI GAGTC 3 cut(s) 131, 230, 340
PluTI GGCGCC 1 cut(s) 79
PpsI GAGTC 3 cut(s) 131, 230, 340
PshBI ATTAAT 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 4 cut(s) 77, 93, 168, 211
PspPI GGNCC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 398, 442
SatI GCNGC 2 cut(s) 255, 269
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 3 cut(s) 132, 230, 341
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 2 cut(s) 10, 202
SetI ASST 4 cut(s) 27, 205, 263, 293
SfoI GGCGCC 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 276
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 3 cut(s) 313, 399, 424
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 3 cut(s) 82, 254, 276
SspDI GGCGCC 1 cut(s) 75
SspI AATATT 1 cut(s) 440
SspMI CTAG 3 cut(s) 171, 285, 368
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 175
TasI AATT 3 cut(s) 313, 399, 424
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 398, 442
Tru9I TTAA 2 cut(s) 398, 442
TscAI CASTG 2 cut(s) 68, 77
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 68
TspRI CASTG 2 cut(s) 68, 77
Van91I CCANNNNNTGG 1 cut(s) 17
VneI GTGCAC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 398
XspI CTAG 3 cut(s) 171, 285, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.