MD02G1196000.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000260
Physical Location & Seq
Forward (+)
18822031 .. 18826542
4512 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1196000.v1.1.491

Sequence Viewer

Length: 681 bp
ATGAAGCGGTATCACCATTGCCACCCAACAGACCCAATTGGCTGTAGTTCAATTACTGTTCTTGGAGGGAGCCTATGTCGAATTCCGCTATGTCTTAACGTTCACTTGATCACTCGTCGTCGGAGTGTGACCAATGCGTCTTCCGCATTATCAGCATCTACTGCTCCACCCGTGAGTGCTCCATTGATTCAAGAGCCTACACCCCTTGCTGAGGCTACTTCTACGGCGTCTCAGGTACCCGTCTCATCGACATCATCAGTGTCGGTTCAACCGCTCAGTGCACGACGGCCTCACCGGCGCCGCCGCGAGCCGGAGCCTTCTGATCACACTTCCTCGGCATCCAGAGTCGAGGGTGAGGCCTCTCGGCCAGCTAAAAAAAACACCAGGGGGCCTAGTCGAATGCTGAAGCACAAACAGATCGTACGTCAGACCGGCTCCAAGATCAAGATTGTGTATGACCCGCGACATCGTGGAGCGTCTACCTCACAGCAGCATAGCTTCATCGTTAGTAGCTGTGGTGTTGTTATTCGAGACAATTGTCCTTTTCAGTGGCAGTCTTGGGCAGAAATTCCCGAGGACAAGAAGGAACTGGTGCGACACGAGTTGTCGTTCATTTATGATCTTGATGACGCATCCCCCGAGGTCATGGCCTACTTAGAGGGGATCTTAGCAAGCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

227

Amino Acids

24.89

Weight (kDa)

9.65

Isoelectric Point (pI)

66.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
Acc65I GGTACC 1 cut(s) 235
AccB1I GGYRCC 2 cut(s) 235, 297
AccBSI CCGCTC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 479
AccII CGCG 2 cut(s) 306, 463
AciI CCGC 7 cut(s) 7, 86, 144, 272, 301, 304, 461
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 365
AcsI RAATTY 2 cut(s) 81, 567
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 2 cut(s) 227, 298
AfaI GTAC 2 cut(s) 237, 423
AfiI CCNNNNNNNGG 2 cut(s) 211, 310
AgsI TTSAA 3 cut(s) 51, 191, 269
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 3 cut(s) 371, 498, 513
AluI AGCT 3 cut(s) 371, 498, 513
Alw21I GWGCWC 2 cut(s) 181, 283
Alw26I GTCTC 3 cut(s) 234, 247, 525
Alw44I GTGCAC 1 cut(s) 279
AlwI GGATC 1 cut(s) 671
Ama87I CYCGRG 2 cut(s) 572, 638
AoxI GGCC 5 cut(s) 287, 357, 365, 389, 648
ApaLI GTGCAC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 2 cut(s) 81, 567
Asp718I GGTACC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 5, 284, 365
AvaI CYCGRG 2 cut(s) 572, 638
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 2 cut(s) 235, 297
BauI CACGAG 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 2 cut(s) 181, 283
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 502
BceAI ACGGC 2 cut(s) 240, 302
BciT130I CCWGG 1 cut(s) 385
BclI TGATCA 2 cut(s) 108, 322
BcoDI GTCTC 3 cut(s) 234, 247, 525
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 301
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 3 cut(s) 301, 304, 491
BlsI GCNGC 3 cut(s) 302, 305, 492
Bme1390I CCNGG 1 cut(s) 385
BmeT110I CYCGRG 2 cut(s) 572, 638
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 6 cut(s) 71, 237, 299, 315, 390, 436
BmrFI CCNGG 1 cut(s) 385
BmsI GCATC 3 cut(s) 164, 347, 641
BoxI GACNNNNGTC 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 210
BsaHI GRCGYC 2 cut(s) 227, 298
BsaJI CCNNGG 4 cut(s) 333, 384, 573, 639
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 310
Bse118I RCCGGY 3 cut(s) 294, 431, 675
Bse1I ACTGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 333, 384, 573, 639
BseGI GGATG 2 cut(s) 338, 632
BseLI CCNNNNNNNGG 2 cut(s) 211, 310
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 201, 245, 289
BseNI ACTGG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 502
Bsh1236I CGCG 2 cut(s) 306, 463
BshFI GGCC 5 cut(s) 289, 359, 367, 391, 650
BshNI GGYRCC 2 cut(s) 235, 297
BsiHKAI GWGCWC 2 cut(s) 181, 283
BsiHKCI CYCGRG 2 cut(s) 572, 638
BsiSI CCGG 4 cut(s) 295, 311, 432, 676
BsiWI CGTACG 1 cut(s) 421
BslI CCNNNNNNNGG 2 cut(s) 211, 310
BsmAI GTCTC 3 cut(s) 234, 247, 525
BsmBI CGTCTC 2 cut(s) 234, 247
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 5 cut(s) 289, 359, 367, 391, 650
BsoBI CYCGRG 2 cut(s) 572, 638
Bsp1286I GDGCHC 2 cut(s) 181, 283
Bsp143I GATC 6 cut(s) 108, 322, 417, 441, 619, 663
BspACI CCGC 7 cut(s) 7, 86, 144, 272, 301, 304, 461
BspANI GGCC 5 cut(s) 289, 359, 367, 391, 650
BspCNI CTCAG 3 cut(s) 202, 244, 288
BspFNI CGCG 2 cut(s) 306, 463
BspLI GGNNCC 6 cut(s) 71, 237, 299, 315, 390, 436
BspPI GGATC 1 cut(s) 671
BspT107I GGYRCC 2 cut(s) 235, 297
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 3 cut(s) 294, 431, 675
BsrI ACTGG 1 cut(s) 594
BssAI RCCGGY 3 cut(s) 294, 431, 675
BssECI CCNNGG 4 cut(s) 333, 384, 573, 639
BssMI GATC 6 cut(s) 108, 322, 417, 441, 619, 663
BssNI GRCGYC 2 cut(s) 227, 298
BssSI CACGAG 1 cut(s) 599
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 2 cut(s) 227, 298
BstAPI GCANNNNNTGC 1 cut(s) 161
BstC8I GCNNGC 3 cut(s) 308, 369, 673
BstDEI CTNAG 5 cut(s) 210, 231, 275, 655, 667
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 338, 632
BstFNI CGCG 2 cut(s) 306, 463
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 6 cut(s) 111, 325, 420, 444, 622, 666
BstMAI GTCTC 3 cut(s) 234, 247, 525
BstMBI GATC 6 cut(s) 108, 322, 417, 441, 619, 663
BstMWI GCNNNNNNNGC 4 cut(s) 143, 152, 161, 295
BstNI CCWGG 1 cut(s) 385
BstPAI GACNNNNGTC 1 cut(s) 537
BstSCI CCNGG 1 cut(s) 383
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 283
BstUI CGCG 2 cut(s) 306, 463
BstV1I GCAGC 1 cut(s) 502
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
BsuRI GGCC 5 cut(s) 289, 359, 367, 391, 650
BtsCI GGATG 2 cut(s) 338, 632
BtsIMutI CAGTG 3 cut(s) 264, 283, 554
Cac8I GCNNGC 3 cut(s) 308, 369, 673
CfoI GCGC 1 cut(s) 300
Cfr10I RCCGGY 3 cut(s) 294, 431, 675
Cfr13I GGNCC 1 cut(s) 389
CseI GACGC 4 cut(s) 126, 216, 465, 638
Csp6I GTAC 2 cut(s) 236, 422
CviAII CATG 1 cut(s) 646
CviQI GTAC 2 cut(s) 236, 422
DdeI CTNAG 5 cut(s) 210, 231, 275, 655, 667
DinI GGCGCC 1 cut(s) 299
DpnI GATC 6 cut(s) 110, 324, 419, 443, 621, 665
DpnII GATC 6 cut(s) 108, 322, 417, 441, 619, 663
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 365
Eco147I AGGCCT 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 425
Eco88I CYCGRG 2 cut(s) 572, 638
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 383
EgeI GGCGCC 1 cut(s) 299
EheI GGCGCC 1 cut(s) 299
Esp3I CGTCTC 2 cut(s) 234, 247
FaeI CATG 1 cut(s) 649
FaiI YATR 6 cut(s) 76, 91, 456, 495, 618, 647
FatI CATG 1 cut(s) 645
FauI CCCGC 1 cut(s) 468
FbaI TGATCA 2 cut(s) 108, 322
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 3 cut(s) 301, 304, 491
FokI GGATG 2 cut(s) 325, 619
Fsp4HI GCNGC 3 cut(s) 301, 304, 491
FspBI CTAG 1 cut(s) 393
GlaI GCGC 1 cut(s) 299
GluI GCNGC 3 cut(s) 301, 304, 491
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 5 cut(s) 289, 359, 367, 391, 650
HapII CCGG 4 cut(s) 295, 311, 432, 676
HgaI GACGC 4 cut(s) 126, 216, 465, 638
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 2 cut(s) 227, 298
Hin1II CATG 1 cut(s) 649
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 187, 345
HpaII CCGG 4 cut(s) 295, 311, 432, 676
HphI GGTGA 3 cut(s) 5, 284, 365
Hpy166II GTNNAC 3 cut(s) 103, 281, 480
Hpy188I TCNGA 3 cut(s) 123, 322, 429
Hpy188III TCNNGA 6 cut(s) 191, 342, 445, 530, 572, 623
Hpy8I GTNNAC 3 cut(s) 103, 281, 480
Hpy99I CGWCG 3 cut(s) 120, 123, 288
HpyAV CCTTC 2 cut(s) 327, 577
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 99, 424
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 152, 161, 295
HpyF3I CTNAG 5 cut(s) 210, 231, 275, 655, 667
HpySE526I ACGT 2 cut(s) 99, 424
Hsp92I GRCGYC 2 cut(s) 227, 298
Hsp92II CATG 1 cut(s) 649
HspAI GCGC 1 cut(s) 298
KasI GGCGCC 1 cut(s) 297
KpnI GGTACC 1 cut(s) 239
Ksp22I TGATCA 2 cut(s) 108, 322
Kzo9I GATC 6 cut(s) 108, 322, 417, 441, 619, 663
LmnI GCTCC 6 cut(s) 69, 169, 184, 313, 440, 473
LpnPI CCDG 9 cut(s) 218, 308, 324, 355, 370, 381, 397, 445, 575
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 3 cut(s) 164, 347, 641
MaeI CTAG 1 cut(s) 393
MaeII ACGT 2 cut(s) 99, 424
MaeIII GTNAC 1 cut(s) 127
MalI GATC 6 cut(s) 110, 324, 419, 443, 621, 665
MbiI CCGCTC 1 cut(s) 274
MboI GATC 6 cut(s) 108, 322, 417, 441, 619, 663
MboII GAAGA 1 cut(s) 132
MfeI CAATTG 2 cut(s) 36, 535
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 2 cut(s) 181, 283
MluCI AATT 5 cut(s) 36, 51, 81, 535, 567
Mly113I GGCGCC 1 cut(s) 298
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 101
MseI TTAA 1 cut(s) 96
MspI CCGG 4 cut(s) 295, 311, 432, 676
MspR9I CCNGG 1 cut(s) 385
MunI CAATTG 2 cut(s) 36, 535
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 2 cut(s) 306, 463
MwoI GCNNNNNNNGC 4 cut(s) 143, 152, 161, 295
NarI GGCGCC 1 cut(s) 298
NdeII GATC 6 cut(s) 108, 322, 417, 441, 619, 663
NlaIII CATG 1 cut(s) 649
NlaIV GGNNCC 6 cut(s) 71, 237, 299, 315, 390, 436
NmeAIII GCCGAG 2 cut(s) 314, 343
NmuCI GTSAC 1 cut(s) 127
PceI AGGCCT 1 cut(s) 359
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 187
Pfl23II CGTACG 1 cut(s) 421
PkrI GCNGC 3 cut(s) 302, 305, 492
PleI GAGTC 1 cut(s) 353
PluTI GGCGCC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 353
PshAI GACNNNNGTC 1 cut(s) 537
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspLI CGTACG 1 cut(s) 421
PspN4I GGNNCC 6 cut(s) 71, 237, 299, 315, 390, 436
PspPI GGNCC 1 cut(s) 389
PsuI RGATCY 1 cut(s) 663
RsaI GTAC 2 cut(s) 237, 423
RsaNI GTAC 2 cut(s) 236, 422
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 301, 304, 491
Sau3AI GATC 6 cut(s) 108, 322, 417, 441, 619, 663
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 385
SduI GDGCHC 2 cut(s) 181, 283
SetI ASST 8 cut(s) 102, 237, 373, 427, 485, 500, 515, 645
SfaNI GCATC 3 cut(s) 164, 347, 641
SfcI CTRYAG 1 cut(s) 43
SfoI GGCGCC 1 cut(s) 299
SgrAI CRCCGGYG 1 cut(s) 294
Sse9I AATT 5 cut(s) 36, 51, 81, 535, 567
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 7 cut(s) 7, 86, 144, 272, 301, 304, 461
SspDI GGCGCC 1 cut(s) 297
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 383
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 2 cut(s) 102, 427
TaqI TCGA 5 cut(s) 79, 248, 348, 397, 529
TasI AATT 5 cut(s) 36, 51, 81, 535, 567
TauI GCSGC 2 cut(s) 303, 306
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 3 cut(s) 264, 283, 554
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 17, 490, 601
TspRI CASTG 3 cut(s) 264, 283, 554
VneI GTGCAC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 209
XapI RAATTY 2 cut(s) 81, 567
XmiI GTMKAC 1 cut(s) 479
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.