pycom14g13340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000260
Physical Location & Seq
Reverse (-)
16280102 .. 16281073
972 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g13340.1

Sequence Viewer

Length: 747 bp
ATGTCACAGTTGATCACTCGTCGTCGGGGTGTGACCAATGCGCCTCCTACATTTTCAGCACCTACTGCTTCAGCCGTGAGTGCTCCATTGATTGGGGAGCCTACATCCCTTATTGAGGCTACTCCTAGGGCATCCCAGGTGCCTGCATCATCGACGTCATCAGTGTCGATTCAGCCGCTCAGTGCACAGCGGCCTCACCGGCGCCGCCACCATCTGAAGCCTTCTGATCACACTTCCTCGACATCCACAATCGAGGGTGGGGGCTCCCAGCCAGCTGAAAAAAACACTAAGGGGCCTAATCGAATGTTGAAGCCGATACACAACGTACGTATGTCCAAAAAAATGATCAAGATTGCGTATGACTCGCGACATCGTGGAGCGGCTACCTCGCAGCAGCATAGCAGCATCTCTACCAGTTGTAGTTTCGTTCTGGATCAGAAGCTCGGTCATCATCATGGCAAGGTTGTTCGAGGTATGGGGAAGGTGCGGGTTCGTGAGATGGGTGCCGCCTCTTCCAGACCGACCACAAGACAGGTCATTGCCCTGACGAAGGAAGTGGAAACCCTAAAAGCTAAGATTGCGGCCCAGGGTGATAAGCTTGCGGCCCAGGGTGAGAAGATTGCGGCCCAGGGTGAGAAGATTGCAGCCCAGGGCGAGAAGTTGAGCATGATCTTACGGGCCTTACAGATGTCCGGCCTCCAAATCCCGATGCCAACACCTAATCTTGCTCCACCTTCAACCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

249

Amino Acids

26.42

Weight (kDa)

11.15

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccB1I GGYRCC 3 cut(s) 139, 201, 503
AccB7I CCANNNNNTGG 1 cut(s) 92
AccBSI CCGCTC 2 cut(s) 178, 380
AccII CGCG 1 cut(s) 367
AciI CCGC 9 cut(s) 176, 190, 205, 380, 487, 507, 581, 602, 623
AclWI GGATC 1 cut(s) 441
AcuI CTGAAG 2 cut(s) 54, 236
AcyI GRCGYC 2 cut(s) 155, 202
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 3 cut(s) 92, 115, 550
AgsI TTSAA 2 cut(s) 310, 738
AjnI CCWGG 5 cut(s) 135, 585, 606, 627, 648
AluBI AGCT 4 cut(s) 275, 442, 572, 598
AluI AGCT 4 cut(s) 275, 442, 572, 598
Alw21I GWGCWC 2 cut(s) 85, 187
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 1 cut(s) 441
AoxI GGCC 7 cut(s) 191, 293, 582, 603, 624, 678, 694
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 4 cut(s) 391, 394, 402, 644
AspA2I CCTAGG 1 cut(s) 125
AspLEI GCGC 2 cut(s) 43, 204
AspS9I GGNCC 5 cut(s) 293, 583, 604, 625, 678
AsuHPI GGTGA 4 cut(s) 188, 602, 623, 644
AvrII CCTAGG 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 187
BanI GGYRCC 3 cut(s) 139, 201, 503
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 2 cut(s) 85, 187
BbvI GCAGC 4 cut(s) 403, 406, 414, 656
BccI CCATC 2 cut(s) 219, 493
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 5 cut(s) 137, 587, 608, 629, 650
BclI TGATCA 3 cut(s) 12, 226, 345
BfaI CTAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 199
BlnI CCTAGG 1 cut(s) 125
Bme1390I CCNGG 5 cut(s) 137, 587, 608, 629, 650
BmgT120I GGNCC 5 cut(s) 293, 583, 604, 625, 678
BmiI GGNNCC 6 cut(s) 99, 141, 203, 265, 294, 505
BmrFI CCNGG 5 cut(s) 137, 587, 608, 629, 650
BmsI GCATC 4 cut(s) 140, 155, 414, 699
BsaAI YACGTR 1 cut(s) 329
BsaHI GRCGYC 2 cut(s) 155, 202
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 115, 550
Bse118I RCCGGY 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 5 cut(s) 137, 587, 608, 629, 650
BseGI GGATG 3 cut(s) 104, 131, 242
BseLI CCNNNNNNNGG 3 cut(s) 92, 115, 550
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 4 cut(s) 403, 406, 414, 656
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 367
BshFI GGCC 7 cut(s) 193, 295, 584, 605, 626, 680, 696
BshNI GGYRCC 3 cut(s) 139, 201, 503
BsiHKAI GWGCWC 2 cut(s) 85, 187
BsiSI CCGG 2 cut(s) 199, 693
BsiWI CGTACG 1 cut(s) 325
BslI CCNNNNNNNGG 3 cut(s) 92, 115, 550
BsnI GGCC 7 cut(s) 193, 295, 584, 605, 626, 680, 696
Bsp1286I GDGCHC 3 cut(s) 85, 187, 266
Bsp143I GATC 5 cut(s) 12, 226, 345, 433, 669
Bsp68I TCGCGA 1 cut(s) 367
BspACI CCGC 9 cut(s) 176, 190, 205, 380, 487, 507, 581, 602, 623
BspANI GGCC 7 cut(s) 193, 295, 584, 605, 626, 680, 696
BspCNI CTCAG 1 cut(s) 192
BspFNI CGCG 1 cut(s) 367
BspLI GGNNCC 6 cut(s) 99, 141, 203, 265, 294, 505
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 3 cut(s) 139, 201, 503
BsrBI CCGCTC 2 cut(s) 178, 380
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 198
BsrI ACTGG 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 198
BssMI GATC 5 cut(s) 12, 226, 345, 433, 669
BssNI GRCGYC 2 cut(s) 155, 202
BssT1I CCWWGG 1 cut(s) 125
Bst2UI CCWGG 5 cut(s) 137, 587, 608, 629, 650
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 517
BstACI GRCGYC 2 cut(s) 155, 202
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 144, 273, 600
BstDEI CTNAG 3 cut(s) 179, 288, 573
BstENI CCTNNNNNAGG 2 cut(s) 113, 548
BstF5I GGATG 3 cut(s) 104, 131, 242
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 43, 204
BstKTI GATC 5 cut(s) 15, 229, 348, 436, 672
BstMBI GATC 5 cut(s) 12, 226, 345, 433, 669
BstMWI GCNNNNNNNGC 4 cut(s) 65, 80, 199, 578
BstNI CCWGG 5 cut(s) 137, 587, 608, 629, 650
BstSCI CCNGG 5 cut(s) 135, 585, 606, 627, 648
BstSLI GKGCMC 1 cut(s) 187
BstSNI TACGTA 1 cut(s) 329
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 4 cut(s) 403, 406, 414, 656
BsuRI GGCC 7 cut(s) 193, 295, 584, 605, 626, 680, 696
BtsCI GGATG 3 cut(s) 104, 131, 242
BtsIMutI CAGTG 2 cut(s) 168, 187
BtuMI TCGCGA 1 cut(s) 367
Cac8I GCNNGC 3 cut(s) 144, 273, 600
CfoI GCGC 2 cut(s) 43, 204
Cfr10I RCCGGY 1 cut(s) 198
Cfr13I GGNCC 5 cut(s) 293, 583, 604, 625, 678
Csp6I GTAC 1 cut(s) 326
CviAII CATG 2 cut(s) 455, 667
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 3 cut(s) 179, 288, 573
DinI GGCGCC 1 cut(s) 203
DpnI GATC 5 cut(s) 14, 228, 347, 435, 671
DpnII GATC 5 cut(s) 12, 226, 345, 433, 669
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Eco105I TACGTA 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 266
Eco57I CTGAAG 2 cut(s) 54, 236
EcoNI CCTNNNNNAGG 2 cut(s) 113, 548
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 5 cut(s) 135, 585, 606, 627, 648
EcoT14I CCWWGG 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 266
EgeI GGCGCC 1 cut(s) 203
EheI GGCGCC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 2 cut(s) 458, 670
FaiI YATR 6 cut(s) 332, 360, 399, 456, 476, 668
FatI CATG 2 cut(s) 454, 666
FauI CCCGC 1 cut(s) 480
FbaI TGATCA 3 cut(s) 12, 226, 345
FokI GGATG 3 cut(s) 91, 118, 229
FriOI GRGCYC 1 cut(s) 266
FspBI CTAG 1 cut(s) 126
GlaI GCGC 2 cut(s) 42, 203
GsaI CCCAGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 7 cut(s) 193, 295, 584, 605, 626, 680, 696
HapII CCGG 2 cut(s) 199, 693
HhaI GCGC 2 cut(s) 43, 204
Hin1I GRCGYC 2 cut(s) 155, 202
Hin1II CATG 2 cut(s) 458, 670
Hin6I GCGC 2 cut(s) 41, 202
HinP1I GCGC 2 cut(s) 41, 202
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 2 cut(s) 169, 362
HpaII CCGG 2 cut(s) 199, 693
HphI GGTGA 4 cut(s) 188, 602, 623, 644
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 216, 226, 438
Hpy188III TCNNGA 6 cut(s) 349, 366, 431, 494, 516, 706
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 3 cut(s) 24, 27, 157
HpyAV CCTTC 4 cut(s) 231, 475, 544, 744
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 3 cut(s) 155, 324, 328
HpyCH4V TGCA 3 cut(s) 146, 185, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 80, 199, 578
HpyF3I CTNAG 3 cut(s) 179, 288, 573
HpySE526I ACGT 3 cut(s) 155, 324, 328
Hsp92I GRCGYC 2 cut(s) 155, 202
Hsp92II CATG 2 cut(s) 458, 670
HspAI GCGC 2 cut(s) 41, 202
KasI GGCGCC 1 cut(s) 201
Ksp22I TGATCA 3 cut(s) 12, 226, 345
Kzo9I GATC 5 cut(s) 12, 226, 345, 433, 669
LmnI GCTCC 5 cut(s) 88, 97, 269, 377, 733
Lsp1109I GCAGC 4 cut(s) 403, 406, 414, 656
LweI GCATC 4 cut(s) 140, 155, 414, 699
MaeI CTAG 1 cut(s) 126
MaeII ACGT 3 cut(s) 155, 324, 328
MaeIII GTNAC 2 cut(s) 3, 31
MalI GATC 5 cut(s) 14, 228, 347, 435, 671
MbiI CCGCTC 2 cut(s) 178, 380
MboI GATC 5 cut(s) 12, 226, 345, 433, 669
MboII GAAGA 3 cut(s) 504, 628, 649
MhlI GDGCHC 3 cut(s) 85, 187, 266
Mly113I GGCGCC 1 cut(s) 202
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 9 cut(s) 54, 109, 204, 247, 247, 397, 464, 520, 707
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 2 cut(s) 190, 275
MspI CCGG 2 cut(s) 199, 693
MspR9I CCNGG 5 cut(s) 137, 587, 608, 629, 650
MvaI CCWGG 5 cut(s) 137, 587, 608, 629, 650
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 4 cut(s) 65, 80, 199, 578
NarI GGCGCC 1 cut(s) 202
NdeII GATC 5 cut(s) 12, 226, 345, 433, 669
NlaIII CATG 2 cut(s) 458, 670
NlaIV GGNNCC 6 cut(s) 99, 141, 203, 265, 294, 505
NmuCI GTSAC 2 cut(s) 3, 31
NruI TCGCGA 1 cut(s) 367
PasI CCCWGGG 4 cut(s) 586, 607, 628, 649
PfeI GAWTC 1 cut(s) 169
Pfl23II CGTACG 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 92
PleI GAGTC 1 cut(s) 356
PluTI GGCGCC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 356
Ppu21I YACGTR 1 cut(s) 329
Psp6I CCWGG 5 cut(s) 135, 585, 606, 627, 648
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 5 cut(s) 135, 585, 606, 627, 648
PspLI CGTACG 1 cut(s) 325
PspN4I GGNNCC 6 cut(s) 99, 141, 203, 265, 294, 505
PspPI GGNCC 5 cut(s) 293, 583, 604, 625, 678
PvuII CAGCTG 1 cut(s) 275
RruI TCGCGA 1 cut(s) 367
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 453
Sau3AI GATC 5 cut(s) 12, 226, 345, 433, 669
Sau96I GGNCC 5 cut(s) 293, 583, 604, 625, 678
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 5 cut(s) 137, 587, 608, 629, 650
SduI GDGCHC 3 cut(s) 85, 187, 266
SfaNI GCATC 4 cut(s) 140, 155, 414, 699
SfoI GGCGCC 1 cut(s) 203
SgrAI CRCCGGYG 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 453
SnaBI TACGTA 1 cut(s) 329
SsiI CCGC 9 cut(s) 176, 190, 205, 380, 487, 507, 581, 602, 623
SspDI GGCGCC 1 cut(s) 201
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 5 cut(s) 135, 585, 606, 627, 648
StyI CCWWGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 3 cut(s) 158, 327, 331
TaqI TCGA 6 cut(s) 152, 167, 239, 252, 301, 469
TaqII GACCGA 2 cut(s) 434, 535
TauI GCSGC 8 cut(s) 178, 193, 207, 383, 509, 584, 605, 626
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 2 cut(s) 168, 187
TseFI GTSAC 2 cut(s) 3, 31
TseI GCWGC 4 cut(s) 391, 394, 402, 644
Tsp45I GTSAC 2 cut(s) 3, 31
TspRI CASTG 2 cut(s) 168, 187
Van91I CCANNNNNTGG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 183
XagI CCTNNNNNAGG 2 cut(s) 113, 548
XmaJI CCTAGG 1 cut(s) 125
XspI CTAG 1 cut(s) 126
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.