pycom15g31550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000260
Physical Location & Seq
Reverse (-)
30008044 .. 30010598
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31550.2

Sequence Viewer

Length: 699 bp
ATGATGTCACACCTCATTAGAACCCGGAGGGTGATGACTTCTACACCTAGTCTGATGACTACACCTAGTCCGATGACTACACCTACTACTGCCGTCACTGCTCCGGCAGAGATGGACCATAGGTCGGTCAATCCGGTTGACCCAGTTGGTCCTTCAGTCCCACAAGCGCAGGCATTGTTGACTTCTTCGGTGGCGTTGCTTGTTAACACCCGATGTACTCACCGACGCCCCCGTACTACGGACCAGATGTCGCCATCGGGATCCACAACCGATGCTTCGGGTAGACGGCCAGCGAAGAAAAACACATGGGGACCTTGTCGGCAATTGAAGACGGCGAAGATCACCCGGGTGACCAATGGTCGTATCCTAGTCGGATATGATGAAGGACATCGGGCAGCACCAACAACAGAGCAGCATAGTGCATTGGCCCACGACATTGGGCATGTCGTGCAGATTTTTTGCTCTATGCGGTGGAAGTCTTGGAAGGCGATGCAGGAGGAGACGAAGACCACTGTACGCAACCAATTGTCCACAAACTACAATTTGGAGGACATAGACGAGGACATGTTCGCGTACCTCAATCGGCTCTTCTTCGAACGCTATAAGCAGTGGTATACTGACTTGCACCAATGTTTCCAGCAATTTGATGATCCGCAGGTCGCTCTCATGGAGGGTTGTCTGAAGGAGTTGGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

233

Amino Acids

26.3

Weight (kDa)

8.62

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccI GTMKAC 2 cut(s) 283, 614
AccII CGCG 1 cut(s) 572
AciI CCGC 2 cut(s) 469, 653
AclWI GGATC 3 cut(s) 255, 268, 644
AcoI YGGCCR 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 4 cut(s) 217, 235, 516, 575
AfiI CCNNNNNNNGG 2 cut(s) 124, 238
AflIII ACRYGT 1 cut(s) 564
AgsI TTSAA 1 cut(s) 328
AhdI GACNNNNNGTC 3 cut(s) 121, 247, 357
AleI CACNNNNGTG 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 3 cut(s) 255, 268, 644
Ama87I CYCGRG 1 cut(s) 345
AoxI GGCC 2 cut(s) 287, 426
ApeKI GCWGC 2 cut(s) 395, 412
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 5 cut(s) 115, 149, 241, 311, 427
AsuC2I CCSGG 3 cut(s) 25, 346, 347
AsuHPI GGTGA 4 cut(s) 43, 212, 334, 361
AsuII TTCGAA 1 cut(s) 594
AvaI CYCGRG 1 cut(s) 345
AvaII GGWCC 4 cut(s) 115, 149, 241, 311
BamHI GGATCC 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 335, 512
BbvI GCAGC 2 cut(s) 407, 424
BccI CCATC 2 cut(s) 106, 262
BceAI ACGGC 3 cut(s) 77, 302, 348
BciVI GTATCC 1 cut(s) 374
BcnI CCSGG 3 cut(s) 25, 346, 347
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 3 cut(s) 48, 66, 368
BfuAI ACCTGC 1 cut(s) 646
BfuI GTATCC 1 cut(s) 374
BisI GCNGC 2 cut(s) 396, 413
BlsI GCNGC 2 cut(s) 397, 414
Bme1390I CCNGG 3 cut(s) 25, 346, 347
Bme18I GGWCC 4 cut(s) 115, 149, 241, 311
BmeRI GACNNNNNGTC 3 cut(s) 121, 247, 357
BmeT110I CYCGRG 1 cut(s) 345
BmgT120I GGNCC 5 cut(s) 115, 149, 241, 311, 427
BmiI GGNNCC 2 cut(s) 262, 312
BmrFI CCNGG 3 cut(s) 25, 346, 347
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 262, 480
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 335, 512
Bpu14I TTCGAA 1 cut(s) 594
BpuMI CCSGG 3 cut(s) 25, 346, 347
BsaHI GRCGYC 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 238
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 124, 238
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 512
BseXI GCAGC 2 cut(s) 407, 424
BsgI GTGCAG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 572
BshFI GGCC 2 cut(s) 289, 428
BsiHKCI CYCGRG 1 cut(s) 345
BsiSI CCGG 4 cut(s) 25, 104, 134, 346
BslFI GGGAC 2 cut(s) 143, 324
BslI CCNNNNNNNGG 2 cut(s) 124, 238
BsmAI GTCTC 1 cut(s) 494
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 2 cut(s) 143, 324
BsnI GGCC 2 cut(s) 289, 428
BsoBI CYCGRG 1 cut(s) 345
Bsp119I TTCGAA 1 cut(s) 594
Bsp143I GATC 3 cut(s) 260, 339, 649
BspACI CCGC 2 cut(s) 469, 653
BspANI GGCC 2 cut(s) 289, 428
BspFNI CGCG 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 262, 312
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 3 cut(s) 255, 268, 644
BspQI GCTCTTC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 594
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 3 cut(s) 260, 339, 649
BssNAI GTATAC 1 cut(s) 615
BssNI GRCGYC 1 cut(s) 226
Bst1107I GTATAC 1 cut(s) 615
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 593
BstACI GRCGYC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 171, 291
BstEII GGTNACC 1 cut(s) 349
BstFNI CGCG 1 cut(s) 572
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 263, 342, 652
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 3 cut(s) 260, 339, 649
BstMWI GCNNNNNNNGC 2 cut(s) 98, 448
BstNSI RCATGY 2 cut(s) 446, 568
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 3 cut(s) 23, 344, 345
BstUI CGCG 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 407, 424
BstV2I GAAGAC 2 cut(s) 335, 512
BstX2I RGATCY 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 437
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 1 cut(s) 615
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 2 cut(s) 289, 428
BtgZI GCGATG 1 cut(s) 503
BtsI GCAGTG 2 cut(s) 96, 614
BtsIMutI CAGTG 3 cut(s) 96, 510, 614
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 2 cut(s) 171, 291
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 5 cut(s) 115, 149, 241, 311, 427
Cfr9I CCCGGG 1 cut(s) 345
CseI GACGC 1 cut(s) 234
Csp6I GTAC 4 cut(s) 216, 234, 515, 574
CviAII CATG 4 cut(s) 306, 443, 565, 667
CviJI RGCY 3 cut(s) 289, 428, 586
CviKI_1 RGCY 3 cut(s) 289, 428, 586
CviQI GTAC 4 cut(s) 216, 234, 515, 574
DpnI GATC 3 cut(s) 262, 341, 651
DpnII GATC 3 cut(s) 260, 339, 649
DriI GACNNNNNGTC 3 cut(s) 121, 247, 357
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 1 cut(s) 593
Eam1105I GACNNNNNGTC 3 cut(s) 121, 247, 357
EarI CTCTTC 1 cut(s) 593
Eco47I GGWCC 4 cut(s) 115, 149, 241, 311
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 345
Eco91I GGTNACC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 4 cut(s) 309, 446, 568, 670
FaqI GGGAC 2 cut(s) 143, 324
FatI CATG 4 cut(s) 305, 442, 564, 666
FblI GTMKAC 2 cut(s) 283, 614
Fnu4HI GCNGC 2 cut(s) 396, 413
Fsp4HI GCNGC 2 cut(s) 396, 413
FspBI CTAG 3 cut(s) 48, 66, 368
GlaI GCGC 1 cut(s) 168
GluI GCNGC 2 cut(s) 396, 413
HaeIII GGCC 2 cut(s) 289, 428
HapII CCGG 4 cut(s) 25, 104, 134, 346
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 1 cut(s) 226
Hin1II CATG 4 cut(s) 309, 446, 568, 670
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 3 cut(s) 139, 180, 205
HindII GTYRAC 3 cut(s) 139, 180, 205
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 4 cut(s) 25, 104, 134, 346
HphI GGTGA 4 cut(s) 43, 212, 334, 361
Hpy166II GTNNAC 6 cut(s) 139, 180, 205, 284, 531, 615
Hpy188I TCNGA 4 cut(s) 54, 72, 374, 681
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 6 cut(s) 139, 180, 205, 284, 531, 615
Hpy99I CGWCG 1 cut(s) 228
HpyAV CCTTC 4 cut(s) 162, 377, 478, 676
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4V TGCA 4 cut(s) 422, 451, 493, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 448
Hsp92I GRCGYC 1 cut(s) 226
Hsp92II CATG 4 cut(s) 309, 446, 568, 670
HspAI GCGC 1 cut(s) 167
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 3 cut(s) 260, 339, 649
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 2 cut(s) 407, 424
LweI GCATC 2 cut(s) 262, 480
MaeI CTAG 3 cut(s) 48, 66, 368
MaeIII GTNAC 3 cut(s) 6, 94, 349
MalI GATC 3 cut(s) 262, 341, 651
MboI GATC 3 cut(s) 260, 339, 649
MboII GAAGA 7 cut(s) 177, 307, 340, 349, 517, 580, 583
MfeI CAATTG 2 cut(s) 323, 524
MflI RGATCY 1 cut(s) 260
MluCI AATT 4 cut(s) 323, 524, 541, 641
MmeI TCCRAC 2 cut(s) 352, 669
MnlI CCTC 7 cut(s) 21, 23, 490, 541, 553, 587, 664
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 4 cut(s) 25, 104, 134, 346
MspR9I CCNGG 3 cut(s) 25, 346, 347
MunI CAATTG 2 cut(s) 323, 524
MvnI CGCG 1 cut(s) 572
MwoI GCNNNNNNNGC 2 cut(s) 98, 448
NciI CCSGG 3 cut(s) 25, 346, 347
NdeII GATC 3 cut(s) 260, 339, 649
NlaIII CATG 4 cut(s) 309, 446, 568, 670
NlaIV GGNNCC 2 cut(s) 262, 312
NmuCI GTSAC 3 cut(s) 6, 94, 349
NspI RCATGY 2 cut(s) 446, 568
NspV TTCGAA 1 cut(s) 594
OliI CACNNNNGTG 1 cut(s) 347
PciI ACATGT 1 cut(s) 564
PciSI GCTCTTC 1 cut(s) 593
PflFI GACNNNGTC 1 cut(s) 315
PkrI GCNGC 2 cut(s) 397, 414
PpuMI RGGWCCY 1 cut(s) 311
PscI ACATGT 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 311
PspEI GGTNACC 1 cut(s) 349
PspN4I GGNNCC 2 cut(s) 262, 312
PspPI GGNCC 5 cut(s) 115, 149, 241, 311, 427
PspPPI RGGWCCY 1 cut(s) 311
PsuI RGATCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 315
RsaI GTAC 4 cut(s) 217, 235, 516, 575
RsaNI GTAC 4 cut(s) 216, 234, 515, 574
RseI CAYNNNNRTG 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 396, 413
Sau3AI GATC 3 cut(s) 260, 339, 649
Sau96I GGNCC 5 cut(s) 115, 149, 241, 311, 427
ScrFI CCNGG 3 cut(s) 25, 346, 347
SetI ASST 8 cut(s) 15, 49, 67, 85, 125, 316, 579, 660
SfaNI GCATC 2 cut(s) 262, 480
SfuI TTCGAA 1 cut(s) 594
SinI GGWCC 4 cut(s) 115, 149, 241, 311
SmaI CCCGGG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 347
Sse9I AATT 4 cut(s) 323, 524, 541, 641
SsiI CCGC 2 cut(s) 469, 653
SspMI CTAG 3 cut(s) 48, 66, 368
StyD4I CCNGG 3 cut(s) 23, 344, 345
TaaI ACNGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 594
TaqII GACCGA 1 cut(s) 115
TasI AATT 4 cut(s) 323, 524, 541, 641
TatI WGTACW 1 cut(s) 215
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 3 cut(s) 103, 517, 614
TseFI GTSAC 3 cut(s) 6, 94, 349
TseI GCWGC 2 cut(s) 395, 412
Tsp45I GTSAC 3 cut(s) 6, 94, 349
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 345
TspRI CASTG 3 cut(s) 103, 517, 614
Tth111I GACNNNGTC 1 cut(s) 315
VpaK11BI GGWCC 4 cut(s) 115, 149, 241, 311
XceI RCATGY 2 cut(s) 446, 568
XmaI CCCGGG 1 cut(s) 345
XmiI GTMKAC 2 cut(s) 283, 614
XspI CTAG 3 cut(s) 48, 66, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.