Rh2BG019800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
1403113 .. 1403505
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG019800.1

Sequence Viewer

Length: 393 bp
ATGATTCTGAAAGAGGAGGCCTATCTACAAGGCTTGGCAGAGAAGCATCCAGATATTCCAATCAAAGAGTTGCCAATATCCCCTGAGGTCGGGATTGAGATTTTAAAGGAGGTACTTGGTGTGAAACCCAAACAACCAGTTCGTGGATTGGGTAGCTTTTGGGTAAATGAGACATCAACCTCCAGCATTATAGAGGAACTGGAGGAAGTTTATGCTGAACTTGAGAGGGAGAGGGCAATTCGGGCTAAAATTCAAGGAATGTTGAATAATGCCTATGAACGACTTAGTCAGCTTGATCCTAATTTTGAAGCGCCACAGCTTCACCTGGTTGATCCTAATATTGAAGCGCCCCAGCTTCACCTGAATGGTGATGAGAAGCATCAAACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.74

Weight (kDa)

4.82

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 143
AclWI GGATC 2 cut(s) 290, 326
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 89, 143
AgsI TTSAA 4 cut(s) 254, 265, 308, 344
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 4 cut(s) 156, 292, 319, 355
AluI AGCT 4 cut(s) 156, 292, 319, 355
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 2 cut(s) 290, 326
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 2 cut(s) 313, 349
AsuHPI GGTGA 3 cut(s) 314, 350, 380
AxyI CCTNAGG 1 cut(s) 84
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 164
BfoI RGCGCY 2 cut(s) 314, 350
Bme1390I CCNGG 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 2 cut(s) 55, 388
BpmI CTGGAG 2 cut(s) 166, 221
BpuEI CTTGAG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 143
Bse1I ACTGG 2 cut(s) 137, 204
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 89, 143
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 2 cut(s) 137, 204
BseRI GAGGAG 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 351
BshFI GGCC 1 cut(s) 20
BslI CCNNNNNNNGG 2 cut(s) 89, 143
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 295, 331
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 290, 326
BsrI ACTGG 2 cut(s) 137, 204
BssMI GATC 2 cut(s) 295, 331
Bst2UI CCWGG 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 84, 284
BstF5I GGATG 1 cut(s) 46
BstH2I RGCGCY 2 cut(s) 314, 350
BstHHI GCGC 2 cut(s) 313, 349
BstKTI GATC 2 cut(s) 298, 334
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 2 cut(s) 295, 331
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 46
CfoI GCGC 2 cut(s) 313, 349
CsiI ACCWGGT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 7 cut(s) 20, 33, 156, 245, 292, 319, 355
CviKI_1 RGCY 7 cut(s) 20, 33, 156, 245, 292, 319, 355
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 84, 284
DpnI GATC 2 cut(s) 297, 333
DpnII GATC 2 cut(s) 295, 331
DraI TTTAAA 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 20
Eco81I CCTNAGG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 324
FaiI YATR 3 cut(s) 191, 213, 276
FokI GGATG 1 cut(s) 33
GlaI GCGC 2 cut(s) 312, 348
GsaI CCCAGC 1 cut(s) 355
GsuI CTGGAG 2 cut(s) 166, 221
HaeII RGCGCY 2 cut(s) 314, 350
HaeIII GGCC 1 cut(s) 20
HhaI GCGC 2 cut(s) 313, 349
Hin6I GCGC 2 cut(s) 311, 347
HinP1I GCGC 2 cut(s) 311, 347
HinfI GANTC 1 cut(s) 4
HphI GGTGA 3 cut(s) 314, 350, 380
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 50, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 84, 284
HspAI GCGC 2 cut(s) 311, 347
Kzo9I GATC 2 cut(s) 295, 331
LpnPI CCDG 9 cut(s) 63, 96, 150, 185, 196, 311, 338, 365, 374
LweI GCATC 2 cut(s) 55, 388
MabI ACCWGGT 1 cut(s) 324
MalI GATC 2 cut(s) 297, 333
MboI GATC 2 cut(s) 295, 331
MluCI AATT 3 cut(s) 237, 249, 301
MnlI CCTC 9 cut(s) 7, 10, 79, 103, 187, 190, 196, 219, 225
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 295, 331
PceI AGGCCT 1 cut(s) 20
PfeI GAWTC 1 cut(s) 4
PflFI GACNNNGTC 1 cut(s) 285
PflMI CCANNNNNTGG 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 1 cut(s) 324
PsyI GACNNNGTC 1 cut(s) 285
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 1 cut(s) 104
Sau3AI GATC 2 cut(s) 295, 331
ScrFI CCNGG 1 cut(s) 326
SetI ASST 9 cut(s) 90, 114, 158, 182, 294, 321, 327, 357, 363
SexAI ACCWGGT 1 cut(s) 324
SfaNI GCATC 2 cut(s) 55, 388
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 3 cut(s) 237, 249, 301
SseBI AGGCCT 1 cut(s) 20
SspI AATATT 1 cut(s) 340
StuI AGGCCT 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 324
TasI AATT 3 cut(s) 237, 249, 301
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 291
Tth111I GACNNNGTC 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.