MD03G1170400.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000260
Physical Location & Seq
Reverse (-)
23096463 .. 23098110
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1170400.v1.1.491

Sequence Viewer

Length: 804 bp
ATGCACGGCGGCCTTACCGGTGCTGCCGTGATTCGGAGCCTTCTGTTCACAGTTCCTCGTCATCCAGAGTCGAGGATGGGGGCTCCCCACCAGCGGGAATCTTGGGCAGAAATTTCCGAGGAGACGAAGATACTGGTGCGAGACAAGTTGTCAGTCAATTTTGATTTTAAGGACATATCCCCCGAGTTCATCACCTACTTAGATGAGACCTTCGCAAACCGGTACAAAAATTGGAAGAGCGATCTTCATGTGCATTTTAAGAAATGGGGTGATCTGGAGACTGCTCACCTACAGGGTTGCCCATCCGAGTTGGCGGACCGGCGAGAGGATTGGGAGTGGCTTTGCAACCATTTTACGGACCCAAAATTTGTGAAGAAATCTATTGCTGACAAGATTGCTCGGGAGTCAAAGACACTTCTCCACCATTCTGGTTCGAAGCCCTTTTCGTATAGGCTTAAGGCACGACGTGAGGAGGGTTCTAAGTTCCCAGAGATTTACTTGTTCAAGGATGTTTACGTTCAACCTGACGATGAGACCAGTGAGCAGCTTTATGATACCTCGATTGAGGACGTTACTGTACCTGAGGATGCAGGTTTTGAGATCATGATTGAGGTCCTGAATCAGAAGTTCGGTCGTTGTCATGGCAAAGTTGTTCGGGGCATGGGGAAGGCGCGTGTTCGTGAAACGGGTGTCGCCTATTCTAGATCAACCACAGGAGAGGTCAATGCTCTGAAGGAGAAAGTGACAACCCTAGAAGGTCAGCTTGTAGCCCAGGACGAGCAGATAAAGGCTCAGAATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

268

Amino Acids

30.69

Weight (kDa)

6.1

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 109 - 186 4.2e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 581
AccII CGCG 1 cut(s) 673
AciI CCGC 3 cut(s) 9, 94, 314
AcsI RAATTY 2 cut(s) 111, 365
AcuI CTGAAG 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 467
AfaI GTAC 2 cut(s) 224, 579
AfiI CCNNNNNNNGG 5 cut(s) 33, 93, 94, 325, 355
AflII CTTAAG 1 cut(s) 455
AgeI ACCGGT 2 cut(s) 17, 219
AgsI TTSAA 2 cut(s) 505, 521
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 771
AluBI AGCT 2 cut(s) 547, 763
AluI AGCT 2 cut(s) 547, 763
Alw26I GTCTC 5 cut(s) 116, 135, 200, 272, 527
Ama87I CYCGRG 2 cut(s) 182, 399
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 23, 544
ApoI RAATTY 2 cut(s) 111, 365
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AsiGI ACCGGT 2 cut(s) 17, 219
AspLEI GCGC 1 cut(s) 673
AspS9I GGNCC 3 cut(s) 316, 358, 613
AsuHPI GGTGA 3 cut(s) 184, 278, 281
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 2 cut(s) 182, 399
AvaII GGWCC 3 cut(s) 316, 358, 613
AxyI CCTNAGG 1 cut(s) 582
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 10, 556
BccI CCATC 2 cut(s) 70, 310
BceAI ACGGC 2 cut(s) 11, 22
BciT130I CCWGG 1 cut(s) 773
BcoDI GTCTC 5 cut(s) 116, 135, 200, 272, 527
BfaI CTAG 2 cut(s) 702, 752
BfmI CTRYAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 1 cut(s) 581
BisI GCNGC 3 cut(s) 10, 24, 545
BlsI GCNGC 3 cut(s) 11, 25, 546
Bme1390I CCNGG 1 cut(s) 773
Bme18I GGWCC 3 cut(s) 316, 358, 613
BmeRI GACNNNNNGTC 1 cut(s) 148
BmeT110I CYCGRG 2 cut(s) 182, 399
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 3 cut(s) 316, 358, 613
BmiI GGNNCC 3 cut(s) 38, 84, 360
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 1 cut(s) 577
BpmI CTGGAG 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 434
BsaI GGTCTC 2 cut(s) 200, 527
BsaJI CCNNGG 2 cut(s) 117, 771
BsaWI WCCGGW 2 cut(s) 17, 219
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 93, 94, 325, 355
Bse118I RCCGGY 3 cut(s) 17, 219, 318
Bse1I ACTGG 2 cut(s) 138, 537
Bse21I CCTNAGG 1 cut(s) 582
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 2 cut(s) 117, 771
BseGI GGATG 5 cut(s) 61, 81, 302, 514, 592
BseLI CCNNNNNNNGG 5 cut(s) 33, 93, 94, 325, 355
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 2 cut(s) 138, 537
BseRI GAGGAG 2 cut(s) 134, 485
BseXI GCAGC 2 cut(s) 10, 556
Bsh1236I CGCG 1 cut(s) 673
Bsh1285I CGRYCG 1 cut(s) 634
BshFI GGCC 1 cut(s) 12
BshTI ACCGGT 2 cut(s) 17, 219
BsiEI CGRYCG 1 cut(s) 634
BsiHKCI CYCGRG 2 cut(s) 182, 399
BsiSI CCGG 3 cut(s) 18, 220, 319
BslI CCNNNNNNNGG 5 cut(s) 33, 93, 94, 325, 355
BsmAI GTCTC 5 cut(s) 116, 135, 200, 272, 527
BsmBI CGTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 2 cut(s) 200, 527
BsoBI CYCGRG 2 cut(s) 182, 399
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 4 cut(s) 241, 271, 600, 704
BspACI CCGC 3 cut(s) 9, 94, 314
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 1 cut(s) 673
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 3 cut(s) 38, 84, 360
BspMI ACCTGC 1 cut(s) 581
BspQI GCTCTTC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 2 cut(s) 200, 527
BsrFI RCCGGY 3 cut(s) 17, 219, 318
BsrI ACTGG 2 cut(s) 138, 537
BssAI RCCGGY 3 cut(s) 17, 219, 318
BssECI CCNNGG 2 cut(s) 117, 771
BssMI GATC 4 cut(s) 241, 271, 600, 704
Bst2UI CCWGG 1 cut(s) 773
Bst4CI ACNGT 2 cut(s) 52, 577
Bst6I CTCTTC 1 cut(s) 230
BstAFI CTTAAG 1 cut(s) 455
BstBI TTCGAA 1 cut(s) 434
BstDEI CTNAG 4 cut(s) 199, 480, 582, 792
BstF5I GGATG 5 cut(s) 61, 81, 302, 514, 592
BstFNI CGCG 1 cut(s) 673
BstHHI GCGC 1 cut(s) 673
BstKTI GATC 4 cut(s) 244, 274, 603, 707
BstMAI GTCTC 5 cut(s) 116, 135, 200, 272, 527
BstMBI GATC 4 cut(s) 241, 271, 600, 704
BstMCI CGRYCG 1 cut(s) 634
BstNI CCWGG 1 cut(s) 773
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 1 cut(s) 290
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 2 cut(s) 10, 556
BstXI CCANNNNNNTGG 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 1 cut(s) 12
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 5 cut(s) 61, 81, 302, 514, 592
BtsIMutI CAGTG 1 cut(s) 544
BveI ACCTGC 1 cut(s) 581
CciI TCATGA 1 cut(s) 603
CfoI GCGC 1 cut(s) 673
Cfr10I RCCGGY 3 cut(s) 17, 219, 318
Cfr13I GGNCC 3 cut(s) 316, 358, 613
CpoI CGGWCCG 1 cut(s) 316
Csp6I GTAC 2 cut(s) 223, 578
CspAI ACCGGT 2 cut(s) 17, 219
CspI CGGWCCG 1 cut(s) 316
CviAII CATG 4 cut(s) 248, 604, 641, 661
CviQI GTAC 2 cut(s) 223, 578
DdeI CTNAG 4 cut(s) 199, 480, 582, 792
DpnI GATC 4 cut(s) 243, 273, 602, 706
DpnII GATC 4 cut(s) 241, 271, 600, 704
DraIII CACNNNGTG 1 cut(s) 467
DriI GACNNNNNGTC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 230
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 2 cut(s) 200, 527
Eco47I GGWCC 3 cut(s) 316, 358, 613
Eco57I CTGAAG 1 cut(s) 752
Eco81I CCTNAGG 1 cut(s) 582
Eco88I CYCGRG 2 cut(s) 182, 399
EcoO109I RGGNCCY 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 771
EcoT38I GRGCYC 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 4 cut(s) 251, 607, 644, 664
FaiI YATR 7 cut(s) 176, 249, 450, 552, 605, 642, 662
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FatI CATG 4 cut(s) 247, 603, 640, 660
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 10, 24, 545
FokI GGATG 5 cut(s) 48, 88, 289, 521, 599
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 10, 24, 545
FspBI CTAG 2 cut(s) 702, 752
GlaI GCGC 1 cut(s) 672
GluI GCNGC 3 cut(s) 10, 24, 545
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 12
HapII CCGG 3 cut(s) 18, 220, 319
HhaI GCGC 1 cut(s) 673
Hin1II CATG 4 cut(s) 251, 607, 644, 664
Hin6I GCGC 1 cut(s) 671
HinP1I GCGC 1 cut(s) 671
HinfI GANTC 5 cut(s) 31, 68, 98, 404, 619
HpaII CCGG 3 cut(s) 18, 220, 319
HphI GGTGA 3 cut(s) 184, 278, 281
Hpy166II GTNNAC 2 cut(s) 48, 514
Hpy188I TCNGA 6 cut(s) 36, 118, 307, 624, 732, 795
Hpy188III TCNNGA 7 cut(s) 65, 275, 401, 604, 616, 680, 702
Hpy8I GTNNAC 2 cut(s) 48, 514
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 5 cut(s) 50, 220, 661, 727, 749
HpyCH4III ACNGT 2 cut(s) 52, 577
HpyCH4IV ACGT 3 cut(s) 466, 516, 570
HpyCH4V TGCA 4 cut(s) 4, 253, 345, 590
HpyF3I CTNAG 4 cut(s) 199, 480, 582, 792
HpySE526I ACGT 3 cut(s) 466, 516, 570
Hsp92II CATG 4 cut(s) 251, 607, 644, 664
HspAI GCGC 1 cut(s) 671
Kzo9I GATC 4 cut(s) 241, 271, 600, 704
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 36, 88
Lsp1109I GCAGC 2 cut(s) 10, 556
LweI GCATC 1 cut(s) 577
MaeI CTAG 2 cut(s) 702, 752
MaeII ACGT 3 cut(s) 466, 516, 570
MaeIII GTNAC 2 cut(s) 571, 742
MalI GATC 4 cut(s) 243, 273, 602, 706
MboI GATC 4 cut(s) 241, 271, 600, 704
MboII GAAGA 4 cut(s) 139, 236, 247, 385
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 4 cut(s) 111, 157, 229, 365
MlyI GAGTC 2 cut(s) 77, 413
MseI TTAA 3 cut(s) 168, 258, 456
MspA1I CMGCKG 1 cut(s) 94
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 3 cut(s) 18, 220, 319
MspR9I CCNGG 1 cut(s) 773
MvaI CCWGG 1 cut(s) 773
MvnI CGCG 1 cut(s) 673
NdeII GATC 4 cut(s) 241, 271, 600, 704
NlaIII CATG 4 cut(s) 251, 607, 644, 664
NlaIV GGNNCC 3 cut(s) 38, 84, 360
NmuCI GTSAC 1 cut(s) 742
NspV TTCGAA 1 cut(s) 434
PagI TCATGA 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 31, 98, 619
PinAI ACCGGT 2 cut(s) 17, 219
PkrI GCNGC 3 cut(s) 11, 25, 546
PleI GAGTC 2 cut(s) 76, 412
PpsI GAGTC 2 cut(s) 76, 412
PpuMI RGGWCCY 1 cut(s) 613
Psp5II RGGWCCY 1 cut(s) 613
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 3 cut(s) 38, 84, 360
PspPI GGNCC 3 cut(s) 316, 358, 613
PspPPI RGGWCCY 1 cut(s) 613
RsaI GTAC 2 cut(s) 224, 579
RsaNI GTAC 2 cut(s) 223, 578
Rsr2I CGGWCCG 1 cut(s) 316
RsrII CGGWCCG 1 cut(s) 316
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 168, 258, 456
SatI GCNGC 3 cut(s) 10, 24, 545
Sau3AI GATC 4 cut(s) 241, 271, 600, 704
Sau96I GGNCC 3 cut(s) 316, 358, 613
SchI GAGTC 2 cut(s) 77, 413
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 1 cut(s) 577
SfcI CTRYAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 434
SinI GGWCC 3 cut(s) 316, 358, 613
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 4 cut(s) 111, 157, 229, 365
SsiI CCGC 3 cut(s) 9, 94, 314
SspMI CTAG 2 cut(s) 702, 752
StyD4I CCNGG 1 cut(s) 771
TaaI ACNGT 2 cut(s) 52, 577
TaiI ACGT 3 cut(s) 469, 519, 573
TaqI TCGA 3 cut(s) 71, 434, 560
TaqII GACCGA 1 cut(s) 620
TasI AATT 4 cut(s) 111, 157, 229, 365
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 3 cut(s) 31, 98, 619
Tru1I TTAA 3 cut(s) 168, 258, 456
Tru9I TTAA 3 cut(s) 168, 258, 456
TscAI CASTG 1 cut(s) 544
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 2 cut(s) 23, 544
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 2 cut(s) 178, 236
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 544
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 316, 358, 613
XapI RAATTY 2 cut(s) 111, 365
XbaI TCTAGA 1 cut(s) 701
XspI CTAG 2 cut(s) 702, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.