pycom15g15950

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
11125425 .. 11126766
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15950.3

Sequence Viewer

Length: 408 bp
ATGGGATGTTTGAAGCAATTTCGGTATAGATTTTCAATTCCCAGCCAGCCAATGGGTATTGACCCAGGTCCTGGATCAGAAGTTCGGTGTCATGGCAAGGTTGTTCGATGTATGGGGAAGGTAGGGGTTCATGAGACGGGTGCCTCATCTTCCAGATCATCCACAAGAGAGGTCAATGCCCTGAAGGAGGAAGTGACAACTCTAAAAGGTCAGCTTGCAGCCCAGGGCGAGCAGATGAGGGCCCAGGGTGAGCAGCTGAGTGCCTATGATGAGCAGATAAGGGCCCAGAACGAGAAGATGAGTGTGATTGTACAGGTCTTAAAGATGTTCGGCCTCCAAATCCCGATGATAGCACCTGATCTTGCTCCGCCTTCGACTTGTCAGCCACTTTGCCTAGCTGATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.66

Weight (kDa)

8.32

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccB7I CCANNNNNTGG 2 cut(s) 52, 71
AciI CCGC 1 cut(s) 368
AclWI GGATC 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 52, 71, 187
AgsI TTSAA 2 cut(s) 13, 36
AjnI CCWGG 4 cut(s) 64, 70, 222, 243
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 3 cut(s) 214, 256, 398
AluI AGCT 3 cut(s) 214, 256, 398
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 3 cut(s) 240, 282, 331
ApaI GGGCCC 2 cut(s) 244, 286
ApeKI GCWGC 2 cut(s) 218, 253
AspS9I GGNCC 5 cut(s) 68, 240, 241, 282, 283
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 2 cut(s) 244, 286
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 2 cut(s) 244, 286
BbvI GCAGC 2 cut(s) 230, 265
BciT130I CCWGG 4 cut(s) 66, 72, 224, 245
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 395, 406
BisI GCNGC 2 cut(s) 219, 254
BlsI GCNGC 2 cut(s) 220, 255
Bme1390I CCNGG 4 cut(s) 66, 72, 224, 245
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 5 cut(s) 68, 240, 241, 282, 283
BmiI GGNNCC 3 cut(s) 142, 242, 284
BmrFI CCNGG 4 cut(s) 66, 72, 224, 245
BoxI GACNNNNGTC 1 cut(s) 66
BsaJI CCNNGG 5 cut(s) 64, 222, 223, 243, 244
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 71, 187
BseBI CCWGG 4 cut(s) 66, 72, 224, 245
BseDI CCNNGG 5 cut(s) 64, 222, 223, 243, 244
BseGI GGATG 2 cut(s) 11, 158
BseLI CCNNNNNNNGG 3 cut(s) 52, 71, 187
BseMII CTCAG 1 cut(s) 248
BseSI GKGCMC 2 cut(s) 244, 286
BseXI GCAGC 2 cut(s) 230, 265
BseYI CCCAGC 1 cut(s) 41
BshFI GGCC 3 cut(s) 242, 284, 333
BshNI GGYRCC 1 cut(s) 140
BslI CCNNNNNNNGG 3 cut(s) 52, 71, 187
BsmAI GTCTC 1 cut(s) 128
BsmBI CGTCTC 1 cut(s) 128
BsnI GGCC 3 cut(s) 242, 284, 333
Bsp120I GGGCCC 2 cut(s) 240, 282
Bsp1286I GDGCHC 2 cut(s) 244, 286
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 3 cut(s) 74, 155, 358
BspACI CCGC 1 cut(s) 368
BspANI GGCC 3 cut(s) 242, 284, 333
BspCNI CTCAG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 142, 242, 284
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 310
BssECI CCNNGG 5 cut(s) 64, 222, 223, 243, 244
BssMI GATC 3 cut(s) 74, 155, 358
Bst2UI CCWGG 4 cut(s) 66, 72, 224, 245
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 47, 216, 230
BstDEI CTNAG 1 cut(s) 257
BstENI CCTNNNNNAGG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 11, 158
BstKTI GATC 3 cut(s) 77, 158, 361
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 74, 155, 358
BstNI CCWGG 4 cut(s) 66, 72, 224, 245
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 4 cut(s) 64, 70, 222, 243
BstSLI GKGCMC 2 cut(s) 244, 286
BstV1I GCAGC 2 cut(s) 230, 265
BsuRI GGCC 3 cut(s) 242, 284, 333
BtsCI GGATG 2 cut(s) 11, 158
Cac8I GCNNGC 3 cut(s) 47, 216, 230
CaiI CAGNNNCTG 1 cut(s) 71
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 5 cut(s) 68, 240, 241, 282, 283
Csp6I GTAC 1 cut(s) 311
CviAII CATG 2 cut(s) 92, 131
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 257
DpnI GATC 3 cut(s) 76, 157, 360
DpnII GATC 3 cut(s) 74, 155, 358
EciI GGCGGA 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 244, 286
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 3 cut(s) 68, 240, 282
EcoRII CCWGG 4 cut(s) 64, 70, 222, 243
EcoT38I GRGCYC 2 cut(s) 244, 286
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 2 cut(s) 95, 134
FaiI YATR 5 cut(s) 27, 93, 113, 132, 267
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 2 cut(s) 91, 130
Fnu4HI GCNGC 2 cut(s) 219, 254
FokI GGATG 2 cut(s) 18, 145
FriOI GRGCYC 2 cut(s) 244, 286
Fsp4HI GCNGC 2 cut(s) 219, 254
FspBI CTAG 2 cut(s) 395, 406
GluI GCNGC 2 cut(s) 219, 254
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 3 cut(s) 242, 284, 333
Hin1II CATG 2 cut(s) 95, 134
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 131, 153, 343
HpyAV CCTTC 3 cut(s) 112, 178, 381
HpyCH4V TGCA 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 257
Hsp92II CATG 2 cut(s) 95, 134
Kzo9I GATC 3 cut(s) 74, 155, 358
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 2 cut(s) 230, 265
MaeI CTAG 2 cut(s) 395, 406
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 76, 157, 360
MboI GATC 3 cut(s) 74, 155, 358
MboII GAAGA 2 cut(s) 141, 307
MhlI GDGCHC 2 cut(s) 244, 286
MluCI AATT 2 cut(s) 17, 36
MnlI CCTC 5 cut(s) 154, 163, 181, 231, 344
MseI TTAA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 256
MspR9I CCNGG 4 cut(s) 66, 72, 224, 245
MvaI CCWGG 4 cut(s) 66, 72, 224, 245
NdeII GATC 3 cut(s) 74, 155, 358
NlaIII CATG 2 cut(s) 95, 134
NlaIV GGNNCC 3 cut(s) 142, 242, 284
NmuCI GTSAC 1 cut(s) 193
PagI TCATGA 1 cut(s) 130
PasI CCCWGGG 2 cut(s) 223, 244
PflMI CCANNNNNTGG 2 cut(s) 52, 71
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 2 cut(s) 220, 255
PpuMI RGGWCCY 1 cut(s) 68
PshAI GACNNNNGTC 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 4 cut(s) 64, 70, 222, 243
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 4 cut(s) 64, 70, 222, 243
PspN4I GGNNCC 3 cut(s) 142, 242, 284
PspOMI GGGCCC 2 cut(s) 240, 282
PspPI GGNCC 5 cut(s) 68, 240, 241, 282, 283
PspPPI RGGWCCY 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 256
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 2 cut(s) 219, 254
Sau3AI GATC 3 cut(s) 74, 155, 358
Sau96I GGNCC 5 cut(s) 68, 240, 241, 282, 283
ScrFI CCNGG 4 cut(s) 66, 72, 224, 245
SduI GDGCHC 2 cut(s) 244, 286
SinI GGWCC 1 cut(s) 68
Sse9I AATT 2 cut(s) 17, 36
SsiI CCGC 1 cut(s) 368
SspMI CTAG 2 cut(s) 395, 406
StyD4I CCNGG 4 cut(s) 64, 70, 222, 243
TaqI TCGA 2 cut(s) 106, 374
TasI AATT 2 cut(s) 17, 36
TatI WGTACW 1 cut(s) 310
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 218, 253
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 119
Van91I CCANNNNNTGG 2 cut(s) 52, 71
VpaK11BI GGWCC 1 cut(s) 68
XagI CCTNNNNNAGG 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XspI CTAG 2 cut(s) 395, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.