pycom09g14680

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000260
Physical Location & Seq
Forward (+)
14424247 .. 14425716
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14680.2

Sequence Viewer

Length: 831 bp
ATGCTGAAGCAGTCACAGAGCGCACGACAGGCCGCCTCCAAGATCAAGATTGCGTATGACGCGCAGCATCGTGGAGCAGCTACCTCACAGCAACATAGCTTCATTGCTAGTAGCTGTGGTGTTGTTATTCCAGACAATTGTCCTTTTCAGTGGGAGTCTTGGGCAGAAATTCCCGAGGAGACGAAGAGAATGGTGCGACACGAGTTGTCGAAGAAATATGTTGCTGGCCAAAAAGCTCGTGAGTCAAAGACACTTCTCCACCATTCCGGTTCGAAGCCCTTTTCGTATAGGCTTCAGACACAACGTCAGGAGGGTTCTAAGTTCCCAGCAATCGACATGTTCAAGGACGTTTACGTTCGACCTGGTCAGGAGATTACTGAGCAGTTTCATGCTACTATGGTGGAAAAGAGCACTTCTGTTCTCCAAGAAGCAACATCGCAGCTTGCCCCGGAGACCCCGATCGAGGACGTCACGATACTTGAGGATGTAGGTTTTCAGATCATGACTGATGTCCTAGATCAAAACTTAGGTCGTCGTCGTGGCAAGGTTGTTCGGTGTATGGGGAAAGCACAGATTCGTGAAACGGGTGCCTCTTCTTCCAGATCAAACGCAGAGGTAGATGCATTGAAGGAGGAAGTGACAACCCTAAAGGCCCAGGGCGAGCAGATGAAGGAGCAGCTGAGGGCCCAGGGCGAGGAGATGAGGTCATATGCCGGGGCGTGGAGAGACCTTGTACAAGCCATACAAATGTCCGGCCTTCAAATCTCACTACCAGCACCTCATCTTGGTCCACCTTCGACCTCAGAGCCACCTCGCCCTGCTGATACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

277

Amino Acids

30.72

Weight (kDa)

7.75

Isoelectric Point (pI)

56.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 587
AccII CGCG 1 cut(s) 62
AciI CCGC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 26, 278
AcyI GRCGYC 1 cut(s) 468
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 4 cut(s) 463, 694, 720, 785
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 343, 628, 761
AhdI GACNNNNNGTC 1 cut(s) 303
AjnI CCWGG 3 cut(s) 361, 654, 687
AluBI AGCT 6 cut(s) 80, 99, 114, 236, 442, 679
AluI AGCT 6 cut(s) 80, 99, 114, 236, 442, 679
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 3 cut(s) 173, 446, 720
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 5 cut(s) 30, 226, 651, 684, 754
ApaI GGGCCC 1 cut(s) 688
ApeKI GCWGC 4 cut(s) 64, 77, 439, 676
ApoI RAATTY 1 cut(s) 168
ArsI GACNNNNNNTTYG 2 cut(s) 514, 546
AspLEI GCGC 2 cut(s) 23, 64
AspS9I GGNCC 4 cut(s) 652, 684, 685, 788
AsuC2I CCSGG 2 cut(s) 449, 715
AsuII TTCGAA 1 cut(s) 272
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 788
BaeGI GKGCMC 1 cut(s) 688
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 688
BauI CACGAG 2 cut(s) 200, 237
Bbv12I GWGCWC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 680
BbvI GCAGC 4 cut(s) 76, 89, 451, 688
BciT130I CCWGG 3 cut(s) 363, 656, 689
BcnI CCSGG 2 cut(s) 449, 715
BcoDI GTCTC 3 cut(s) 173, 446, 720
BfaI CTAG 3 cut(s) 108, 515, 829
BisI GCNGC 5 cut(s) 33, 65, 78, 440, 677
BlsI GCNGC 5 cut(s) 34, 66, 79, 441, 678
Bme1390I CCNGG 5 cut(s) 363, 449, 656, 689, 715
Bme18I GGWCC 1 cut(s) 788
BmeRI GACNNNNNGTC 1 cut(s) 303
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 4 cut(s) 652, 684, 685, 788
BmiI GGNNCC 2 cut(s) 589, 686
BmrFI CCNGG 5 cut(s) 363, 449, 656, 689, 715
BmsI GCATC 2 cut(s) 76, 610
BoxI GACNNNNGTC 2 cut(s) 138, 509
Bpu10I CCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 2 cut(s) 449, 715
BsaHI GRCGYC 1 cut(s) 468
BsaI GGTCTC 2 cut(s) 446, 720
BsaJI CCNNGG 7 cut(s) 174, 447, 654, 655, 687, 688, 714
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 689, 719
Bsc4I CCNNNNNNNGG 4 cut(s) 463, 694, 720, 785
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 3 cut(s) 363, 656, 689
BseDI CCNNGG 7 cut(s) 174, 447, 654, 655, 687, 688, 714
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 4 cut(s) 463, 694, 720, 785
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 3 cut(s) 369, 671, 816
BseRI GAGGAG 2 cut(s) 191, 710
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 4 cut(s) 76, 89, 451, 688
BseYI CCCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 462
BshFI GGCC 5 cut(s) 32, 228, 653, 686, 756
BshNI GGYRCC 1 cut(s) 587
BsiEI CGRYCG 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 4 cut(s) 267, 449, 714, 753
BslI CCNNNNNNNGG 4 cut(s) 463, 694, 720, 785
BsmAI GTCTC 3 cut(s) 173, 446, 720
BsmBI CGTCTC 1 cut(s) 173
BsnI GGCC 5 cut(s) 32, 228, 653, 686, 756
Bso31I GGTCTC 2 cut(s) 446, 720
BsoBI CYCGRG 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 272
Bsp120I GGGCCC 1 cut(s) 684
Bsp1286I GDGCHC 2 cut(s) 413, 688
Bsp1407I TGTACA 1 cut(s) 733
Bsp143I GATC 5 cut(s) 42, 459, 498, 517, 602
BspACI CCGC 1 cut(s) 33
BspANI GGCC 5 cut(s) 32, 228, 653, 686, 756
BspCNI CTCAG 3 cut(s) 370, 672, 815
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 589, 686
BspT104I TTCGAA 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 2 cut(s) 446, 720
BsrDI GCAATG 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 733
BssECI CCNNGG 7 cut(s) 174, 447, 654, 655, 687, 688, 714
BssMI GATC 5 cut(s) 42, 459, 498, 517, 602
BssNI GRCGYC 1 cut(s) 468
BssSI CACGAG 2 cut(s) 200, 237
Bst2BI CACGAG 2 cut(s) 200, 237
Bst2UI CCWGG 3 cut(s) 363, 656, 689
Bst6I CTCTTC 2 cut(s) 179, 598
BstACI GRCGYC 1 cut(s) 468
BstAUI TGTACA 1 cut(s) 733
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 226, 444, 662
BstDEI CTNAG 5 cut(s) 318, 378, 526, 680, 802
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 1 cut(s) 62
BstHHI GCGC 2 cut(s) 23, 64
BstKTI GATC 5 cut(s) 45, 462, 501, 520, 605
BstMAI GTCTC 3 cut(s) 173, 446, 720
BstMBI GATC 5 cut(s) 42, 459, 498, 517, 602
BstMCI CGRYCG 1 cut(s) 462
BstMWI GCNNNNNNNGC 2 cut(s) 29, 59
BstNI CCWGG 3 cut(s) 363, 656, 689
BstNSI RCATGY 1 cut(s) 340
BstPAI GACNNNNGTC 2 cut(s) 138, 509
BstSCI CCNGG 5 cut(s) 361, 447, 654, 687, 713
BstSLI GKGCMC 1 cut(s) 688
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 4 cut(s) 76, 89, 451, 688
BsuRI GGCC 5 cut(s) 32, 228, 653, 686, 756
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 226, 444, 662
CciI TCATGA 1 cut(s) 501
CfoI GCGC 2 cut(s) 23, 64
Cfr13I GGNCC 4 cut(s) 652, 684, 685, 788
CseI GACGC 1 cut(s) 68
CsiI ACCWGGT 1 cut(s) 361
Csp6I GTAC 1 cut(s) 734
CviAII CATG 3 cut(s) 337, 389, 502
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 5 cut(s) 318, 378, 526, 680, 802
DpnI GATC 5 cut(s) 44, 461, 500, 519, 604
DpnII GATC 5 cut(s) 42, 459, 498, 517, 602
DriI GACNNNNNGTC 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 179, 598
Eam1105I GACNNNNNGTC 1 cut(s) 303
EarI CTCTTC 2 cut(s) 179, 598
Eco24I GRGCYC 1 cut(s) 688
Eco31I GGTCTC 2 cut(s) 446, 720
Eco47I GGWCC 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 26, 278
Eco88I CYCGRG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 684
EcoRII CCWGG 3 cut(s) 361, 654, 687
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 688
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 340, 392, 505
FatI CATG 3 cut(s) 336, 388, 501
FauNDI CATATG 1 cut(s) 709
Fnu4HI GCNGC 5 cut(s) 33, 65, 78, 440, 677
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 5 cut(s) 33, 65, 78, 440, 677
FspBI CTAG 3 cut(s) 108, 515, 829
GlaI GCGC 2 cut(s) 22, 63
GluI GCNGC 5 cut(s) 33, 65, 78, 440, 677
GsaI CCCAGC 1 cut(s) 329
HaeIII GGCC 5 cut(s) 32, 228, 653, 686, 756
HapII CCGG 4 cut(s) 267, 449, 714, 753
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 23, 64
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 3 cut(s) 340, 392, 505
Hin6I GCGC 2 cut(s) 21, 62
HinP1I GCGC 2 cut(s) 21, 62
HinfI GANTC 3 cut(s) 155, 242, 574
HpaII CCGG 4 cut(s) 267, 449, 714, 753
Hpy166II GTNNAC 2 cut(s) 352, 791
Hpy188I TCNGA 3 cut(s) 297, 498, 805
Hpy8I GTNNAC 2 cut(s) 352, 791
Hpy99I CGWCG 2 cut(s) 537, 540
HpyAV CCTTC 4 cut(s) 622, 664, 767, 804
HpyCH4IV ACGT 4 cut(s) 304, 348, 354, 468
HpyCH4V TGCA 1 cut(s) 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 59
HpyF3I CTNAG 5 cut(s) 318, 378, 526, 680, 802
HpySE526I ACGT 4 cut(s) 304, 348, 354, 468
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 3 cut(s) 340, 392, 505
HspAI GCGC 2 cut(s) 21, 62
Kzo9I GATC 5 cut(s) 42, 459, 498, 517, 602
LmnI GCTCC 2 cut(s) 74, 673
Lsp1109I GCAGC 4 cut(s) 76, 89, 451, 688
LweI GCATC 2 cut(s) 76, 610
MabI ACCWGGT 1 cut(s) 361
MaeI CTAG 3 cut(s) 108, 515, 829
MaeII ACGT 4 cut(s) 304, 348, 354, 468
MaeIII GTNAC 3 cut(s) 12, 469, 637
MalI GATC 5 cut(s) 44, 461, 500, 519, 604
MboI GATC 5 cut(s) 42, 459, 498, 517, 602
MboII GAAGA 4 cut(s) 196, 223, 585, 588
MfeI CAATTG 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 413, 688
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 2 cut(s) 136, 168
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 2 cut(s) 164, 251
Mox20I TGGCCA 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 625
MscI TGGCCA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 679
MspI CCGG 4 cut(s) 267, 449, 714, 753
MspR9I CCNGG 5 cut(s) 363, 449, 656, 689, 715
MunI CAATTG 1 cut(s) 136
MvaI CCWGG 3 cut(s) 363, 656, 689
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 29, 59
NciI CCSGG 2 cut(s) 449, 715
NdeI CATATG 1 cut(s) 709
NdeII GATC 5 cut(s) 42, 459, 498, 517, 602
NlaIII CATG 3 cut(s) 340, 392, 505
NlaIV GGNNCC 2 cut(s) 589, 686
NmuCI GTSAC 3 cut(s) 12, 469, 637
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 340
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 1 cut(s) 501
PasI CCCWGGG 2 cut(s) 655, 688
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 1 cut(s) 574
PflFI GACNNNGTC 1 cut(s) 363
PkrI GCNGC 5 cut(s) 34, 66, 79, 441, 678
Ple19I CGATCG 1 cut(s) 462
PleI GAGTC 2 cut(s) 163, 250
PpsI GAGTC 2 cut(s) 163, 250
PscI ACATGT 1 cut(s) 336
PshAI GACNNNNGTC 2 cut(s) 138, 509
Psp6I CCWGG 3 cut(s) 361, 654, 687
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 3 cut(s) 361, 654, 687
PspN4I GGNNCC 2 cut(s) 589, 686
PspOMI GGGCCC 1 cut(s) 684
PspPI GGNCC 4 cut(s) 652, 684, 685, 788
PsyI GACNNNGTC 1 cut(s) 363
PvuI CGATCG 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 679
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
RseI CAYNNNNRTG 1 cut(s) 746
SatI GCNGC 5 cut(s) 33, 65, 78, 440, 677
Sau3AI GATC 5 cut(s) 42, 459, 498, 517, 602
Sau96I GGNCC 4 cut(s) 652, 684, 685, 788
SchI GAGTC 2 cut(s) 164, 251
ScrFI CCNGG 5 cut(s) 363, 449, 656, 689, 715
SduI GDGCHC 2 cut(s) 413, 688
SexAI ACCWGGT 1 cut(s) 361
SfaNI GCATC 2 cut(s) 76, 610
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 2 cut(s) 136, 168
SsiI CCGC 1 cut(s) 33
SspMI CTAG 3 cut(s) 108, 515, 829
StyD4I CCNGG 5 cut(s) 361, 447, 654, 687, 713
TaiI ACGT 4 cut(s) 307, 351, 357, 471
TaqI TCGA 6 cut(s) 209, 272, 333, 358, 462, 797
TasI AATT 2 cut(s) 136, 168
TatI WGTACW 1 cut(s) 733
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 574
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 3 cut(s) 12, 469, 637
TseI GCWGC 4 cut(s) 64, 77, 439, 676
Tsp45I GTSAC 3 cut(s) 12, 469, 637
TspDTI ATGAA 3 cut(s) 91, 377, 683
TspRI CASTG 1 cut(s) 155
Tth111I GACNNNGTC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 788
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 340
XspI CTAG 3 cut(s) 108, 515, 829
ZraI GACGTC 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.