pycom13g02180

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
1514168 .. 1514587
420 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02180.1

Sequence Viewer

Length: 420 bp
ATGGTGGAAAAGTCCACTGCTGTTCTCCAAGAAGCAACATCGCAGCTTCCCCCGGAGACCCCGATCGAGGACGTCAATGTACCCGAGGATGCAGATATTCAGATCGTGACTGAGGTCTTGGATCAGAAGTTGGGTCGTCGTTATGGCAAGATTGTTCGATGTATGGGGAAGGCGGGGGTTCGTGAGACGGGTGCCTCCTCTTCCAGATCGTCCACAGGAGAGGTCAATGCCTTGAAGGAGGAAGTGACAACCCTAAAAGGTCAGCTTGCGGCCCAGGGCGAGTACATTAAGGCCCAGGACGAGAGGATGAGTATGATTGTACAAGCCTTAGCGATGTCCGGCCTCCAGATCCCGATGCCAACACGTGATGTTGCTCCACCTTCAACTTCCCAGCCACTTCACCCAGCTGATACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

14.95

Weight (kDa)

4.9

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 2 cut(s) 173, 269
AclWI GGATC 2 cut(s) 129, 343
AcvI CACGTG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 3 cut(s) 81, 284, 321
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 2 cut(s) 235, 384
AjnI CCWGG 2 cut(s) 273, 294
AluBI AGCT 3 cut(s) 46, 265, 407
AluI AGCT 3 cut(s) 46, 265, 407
Alw26I GTCTC 2 cut(s) 50, 179
AlwI GGATC 2 cut(s) 129, 343
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 3 cut(s) 270, 291, 340
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 271, 292
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 83
BanI GGYRCC 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 365
BbvI GCAGC 1 cut(s) 55
BciT130I CCWGG 2 cut(s) 275, 296
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 50, 179
BisI GCNGC 2 cut(s) 44, 270
BlsI GCNGC 2 cut(s) 45, 271
Bme1390I CCNGG 3 cut(s) 53, 275, 296
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 271, 292
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 3 cut(s) 53, 275, 296
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 79, 345
BmuI ACTGGG 1 cut(s) 409
BoxI GACNNNNGTC 1 cut(s) 113
BpmI CTGGAG 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 5 cut(s) 51, 84, 273, 274, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 415
BseBI CCWGG 2 cut(s) 275, 296
BseDI CCNNGG 5 cut(s) 51, 84, 273, 274, 294
BseGI GGATG 2 cut(s) 94, 312
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 2 cut(s) 390, 403
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 272, 293, 342
BshNI GGYRCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 53, 339
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 50, 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 3 cut(s) 272, 293, 342
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 5 cut(s) 63, 102, 121, 206, 348
BspACI CCGC 2 cut(s) 173, 269
BspANI GGCC 3 cut(s) 272, 293, 342
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 2 cut(s) 129, 343
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 5 cut(s) 51, 84, 273, 274, 294
BssMI GATC 5 cut(s) 63, 102, 121, 206, 348
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 275, 296
Bst6I CTCTTC 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 111, 328
BstF5I GGATG 2 cut(s) 94, 312
BstKTI GATC 5 cut(s) 66, 105, 124, 209, 351
BstMAI GTCTC 2 cut(s) 50, 179
BstMBI GATC 5 cut(s) 63, 102, 121, 206, 348
BstMCI CGRYCG 1 cut(s) 66
BstNI CCWGG 2 cut(s) 275, 296
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 3 cut(s) 51, 273, 294
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BsuRI GGCC 3 cut(s) 272, 293, 342
BtgZI GCGATG 2 cut(s) 24, 347
BtsCI GGATG 2 cut(s) 94, 312
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 267
Cfr13I GGNCC 2 cut(s) 271, 292
Csp6I GTAC 3 cut(s) 80, 283, 320
CviJI RGCY 8 cut(s) 46, 265, 272, 293, 326, 342, 394, 407
CviKI_1 RGCY 8 cut(s) 46, 265, 272, 293, 326, 342, 394, 407
CviQI GTAC 3 cut(s) 80, 283, 320
DdeI CTNAG 2 cut(s) 111, 328
DpnI GATC 5 cut(s) 65, 104, 123, 208, 350
DpnII GATC 5 cut(s) 63, 102, 121, 206, 348
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 50
Eco72I CACGTG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 273, 294
Esp3I CGTCTC 1 cut(s) 179
FaiI YATR 3 cut(s) 144, 164, 314
FalI AAGNNNNNCTT 2 cut(s) 249, 281
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 44, 270
FokI GGATG 2 cut(s) 101, 319
Fsp4HI GCNGC 2 cut(s) 44, 270
GluI GCNGC 2 cut(s) 44, 270
GsaI CCCAGC 2 cut(s) 394, 407
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 3 cut(s) 272, 293, 342
HapII CCGG 2 cut(s) 53, 339
Hin1I GRCGYC 1 cut(s) 72
HpaII CCGG 2 cut(s) 53, 339
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 15, 213
Hpy188I TCNGA 2 cut(s) 102, 126
Hpy188III TCNNGA 5 cut(s) 106, 182, 204, 346, 352
Hpy8I GTNNAC 2 cut(s) 15, 213
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 163, 229, 390
HpyCH4IV ACGT 2 cut(s) 72, 364
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 111, 328
HpySE526I ACGT 2 cut(s) 72, 364
Hsp92I GRCGYC 1 cut(s) 72
Kzo9I GATC 5 cut(s) 63, 102, 121, 206, 348
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 79, 345
MaeII ACGT 2 cut(s) 72, 364
MaeIII GTNAC 2 cut(s) 106, 244
MalI GATC 5 cut(s) 65, 104, 123, 208, 350
MboI GATC 5 cut(s) 63, 102, 121, 206, 348
MboII GAAGA 1 cut(s) 192
MflI RGATCY 1 cut(s) 348
MnlI CCTC 9 cut(s) 61, 79, 106, 205, 208, 214, 232, 297, 353
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 2 cut(s) 53, 339
MspR9I CCNGG 3 cut(s) 53, 275, 296
MvaI CCWGG 2 cut(s) 275, 296
NciI CCSGG 1 cut(s) 53
NdeII GATC 5 cut(s) 63, 102, 121, 206, 348
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 106, 244
PasI CCCWGGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 45, 271
Ple19I CGATCG 1 cut(s) 66
PmaCI CACGTG 1 cut(s) 365
PmlI CACGTG 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 365
PshAI GACNNNNGTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 273, 294
PspCI CACGTG 1 cut(s) 365
PspFI CCCAGC 2 cut(s) 390, 403
PspGI CCWGG 2 cut(s) 273, 294
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 2 cut(s) 271, 292
PsuI RGATCY 1 cut(s) 348
PvuI CGATCG 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 3 cut(s) 81, 284, 321
RsaNI GTAC 3 cut(s) 80, 283, 320
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 44, 270
Sau3AI GATC 5 cut(s) 63, 102, 121, 206, 348
Sau96I GGNCC 2 cut(s) 271, 292
ScrFI CCNGG 3 cut(s) 53, 275, 296
SetI ASST 9 cut(s) 48, 75, 117, 225, 262, 267, 367, 382, 409
SfaNI GCATC 2 cut(s) 79, 345
SsiI CCGC 2 cut(s) 173, 269
StyD4I CCNGG 3 cut(s) 51, 273, 294
TaiI ACGT 2 cut(s) 75, 367
TaqI TCGA 2 cut(s) 66, 157
TatI WGTACW 2 cut(s) 282, 319
TauI GCSGC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 2 cut(s) 106, 244
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 2 cut(s) 106, 244
TspRI CASTG 1 cut(s) 22
ZraI GACGTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.