MD03G1196800.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000260
Physical Location & Seq
Reverse (-)
26916641 .. 26923704
7064 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1196800.v1.1.491

Sequence Viewer

Length: 342 bp
ATGCCCTTCTCGTATAGGGTTGAGGCGCGACGTCAGAAGGGTTCTAAGGTCCCAGAGCTCGACATGTTCAAGGACGTTTATGTTCGACCCAACGATGAGACCACTGAGCAGCTCCATGCTGCAATGGTGGAGAAGGTCATTGTTGTTCTCCAAGAAGCAGCATCGCAGCTTCCCTTGGAGACCCTGATCGAGAACGTCACTGTACCCGAGGATGCAGGTTTTCAGATCCTCACTGAGATCCTGGATCAGAAGCTCGGTCATCGTCATGGTAAGGTTGTTTGGGGCATGGGGAAGGCGCAAGTTCGTGAGACGGGTGCCTCATTTTCTAGACCAATCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

114

Amino Acids

12.73

Weight (kDa)

5.91

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 34
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 314
AccII CGCG 1 cut(s) 28
AclWI GGATC 3 cut(s) 220, 232, 252
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 204
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 4 cut(s) 58, 112, 169, 253
AluI AGCT 4 cut(s) 58, 112, 169, 253
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 3 cut(s) 92, 173, 302
AlwI GGATC 3 cut(s) 220, 232, 252
Ama87I CYCGRG 1 cut(s) 206
ApeKI GCWGC 4 cut(s) 109, 119, 158, 166
AspLEI GCGC 2 cut(s) 28, 298
AspS9I GGNCC 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 106, 121, 170, 178
BciT130I CCWGG 1 cut(s) 242
BcoDI GTCTC 3 cut(s) 92, 173, 302
BfaI CTAG 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 4 cut(s) 110, 120, 159, 167
BlsI GCNGC 4 cut(s) 111, 121, 160, 168
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 51, 316
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 170, 202
BsaHI GRCGYC 1 cut(s) 31
BsaI GGTCTC 2 cut(s) 92, 173
BsaJI CCNNGG 2 cut(s) 174, 207
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 174, 207
BseGI GGATG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 96, 225
BseXI GCAGC 4 cut(s) 106, 121, 170, 178
Bsh1236I CGCG 1 cut(s) 28
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 35
BsmAI GTCTC 3 cut(s) 92, 173, 302
BsmBI CGTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 35
Bso31I GGTCTC 2 cut(s) 92, 173
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 4 cut(s) 186, 225, 237, 244
BspCNI CTCAG 2 cut(s) 97, 226
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 51, 316
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 3 cut(s) 220, 232, 252
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 2 cut(s) 92, 173
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 2 cut(s) 174, 207
BssMI GATC 4 cut(s) 186, 225, 237, 244
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 31
BstDEI CTNAG 3 cut(s) 45, 105, 234
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 2 cut(s) 28, 298
BstKTI GATC 4 cut(s) 189, 228, 240, 247
BstMAI GTCTC 3 cut(s) 92, 173, 302
BstMBI GATC 4 cut(s) 186, 225, 237, 244
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 240
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 106, 121, 170, 178
BstX2I RGATCY 2 cut(s) 225, 237
BstYI RGATCY 2 cut(s) 225, 237
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 3 cut(s) 102, 198, 231
BveI ACCTGC 1 cut(s) 206
CfoI GCGC 2 cut(s) 28, 298
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 203
CviAII CATG 5 cut(s) 64, 116, 266, 286, 339
CviJI RGCY 4 cut(s) 58, 112, 169, 253
CviKI_1 RGCY 4 cut(s) 58, 112, 169, 253
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 3 cut(s) 45, 105, 234
DpnI GATC 4 cut(s) 188, 227, 239, 246
DpnII GATC 4 cut(s) 186, 225, 237, 244
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 60
Eco31I GGTCTC 2 cut(s) 92, 173
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 5 cut(s) 67, 119, 269, 289, 342
FaiI YATR 7 cut(s) 15, 65, 81, 117, 267, 287, 340
FaqI GGGAC 1 cut(s) 35
FatI CATG 5 cut(s) 63, 115, 265, 285, 338
Fnu4HI GCNGC 4 cut(s) 110, 120, 159, 167
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 4 cut(s) 110, 120, 159, 167
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 27, 297
GluI GCNGC 4 cut(s) 110, 120, 159, 167
HhaI GCGC 2 cut(s) 28, 298
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 5 cut(s) 67, 119, 269, 289, 342
Hin6I GCGC 2 cut(s) 26, 296
HinP1I GCGC 2 cut(s) 26, 296
Hpy188I TCNGA 3 cut(s) 36, 225, 249
Hpy188III TCNNGA 3 cut(s) 190, 305, 327
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 4 cut(s) 16, 31, 127, 286
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 3 cut(s) 31, 75, 195
HpyCH4V TGCA 2 cut(s) 122, 215
HpyF3I CTNAG 3 cut(s) 45, 105, 234
HpySE526I ACGT 3 cut(s) 31, 75, 195
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 5 cut(s) 67, 119, 269, 289, 342
HspAI GCGC 2 cut(s) 26, 296
Kzo9I GATC 4 cut(s) 186, 225, 237, 244
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 66, 197, 201, 227, 254
Lsp1109I GCAGC 4 cut(s) 106, 121, 170, 178
LweI GCATC 2 cut(s) 170, 202
MaeI CTAG 1 cut(s) 327
MaeII ACGT 3 cut(s) 31, 75, 195
MaeIII GTNAC 1 cut(s) 196
MalI GATC 4 cut(s) 188, 227, 239, 246
MboI GATC 4 cut(s) 186, 225, 237, 244
MflI RGATCY 2 cut(s) 225, 237
MhlI GDGCHC 1 cut(s) 60
MnlI CCTC 4 cut(s) 16, 202, 239, 328
MslI CAYNNNNRTG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 28
NdeII GATC 4 cut(s) 186, 225, 237, 244
NlaIII CATG 5 cut(s) 67, 119, 269, 289, 342
NlaIV GGNNCC 2 cut(s) 51, 316
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 67
PciI ACATGT 1 cut(s) 63
PfoI TCCNGGA 1 cut(s) 240
PkrI GCNGC 4 cut(s) 111, 121, 160, 168
PpuMI RGGWCCY 1 cut(s) 49
PscI ACATGT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 51, 316
PspPI GGNCC 1 cut(s) 49
PspPPI RGGWCCY 1 cut(s) 49
PsuI RGATCY 2 cut(s) 225, 237
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 60
SatI GCNGC 4 cut(s) 110, 120, 159, 167
Sau3AI GATC 4 cut(s) 186, 225, 237, 244
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 2 cut(s) 170, 202
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 264
SspMI CTAG 1 cut(s) 327
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 3 cut(s) 34, 78, 198
TaqI TCGA 3 cut(s) 60, 85, 189
TaqII GACCGA 1 cut(s) 245
TscAI CASTG 3 cut(s) 109, 205, 238
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 4 cut(s) 109, 119, 158, 166
Tsp45I GTSAC 1 cut(s) 196
TspRI CASTG 3 cut(s) 109, 205, 238
VpaK11BI GGWCC 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 326
XceI RCATGY 1 cut(s) 67
XspI CTAG 1 cut(s) 327
ZraI GACGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.