pycom14g10680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000260
Physical Location & Seq
Reverse (-)
13407746 .. 13408639
894 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g10680.2

Sequence Viewer

Length: 321 bp
ATGACGGTCCGAAGGGGGTGTAAGTTTCCTGAAATTGACATGTTCAAGGAGGTGTACGTTTGGCCCGAGGATGAGCTGACGGAGCAGCTTTATACCCTTGGTCATCGGCCTAGGAAAGTTCACTGGGGGCATGGGAAAGCCCGCCTTCAGGACCCGTCTGCCTCATCCTCCAGGCAGAGAACAGAAGAGGTCGAAACGCTAACATTTGAAGTGGCAGACCTAAAGGAGTGGATTGCCACCCAACAGTCTCTAATTGCGACCCAAAACAATTGGATGAACCAAATTCGTCGCGCACTTCAAATCTCTGGCTTTCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

107

Amino Acids

12.51

Weight (kDa)

6.83

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 46, 209, 299, 314
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 76, 88
AluI AGCT 2 cut(s) 76, 88
Alw26I GTCTC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 2 cut(s) 62, 107
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 1 cut(s) 282
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 3 cut(s) 7, 63, 151
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 2 cut(s) 7, 151
AvrII CCTAGG 1 cut(s) 110
BbvI GCAGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 86
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 2 cut(s) 7, 151
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 7, 63, 151
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 172
BmrI ACTGGG 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 133
BpmI CTGGAG 1 cut(s) 154
BsaJI CCNNGG 3 cut(s) 66, 97, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 66, 97, 110
BseGI GGATG 3 cut(s) 76, 164, 279
BseLI CCNNNNNNNGG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 64, 109
BsiHKCI CYCGRG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 2 cut(s) 64, 109
BsoBI CYCGRG 1 cut(s) 65
BspACI CCGC 1 cut(s) 142
BspANI GGCC 2 cut(s) 64, 109
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 153
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 66, 97, 110
BssT1I CCWWGG 2 cut(s) 97, 110
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 7, 246
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 3 cut(s) 76, 164, 279
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 293
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 1 cut(s) 170
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 64, 109
BtsCI GGATG 3 cut(s) 76, 164, 279
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 7, 63, 151
CpoI CGGWCCG 1 cut(s) 7
Csp6I GTAC 1 cut(s) 55
CspI CGGWCCG 1 cut(s) 7
CviAII CATG 2 cut(s) 40, 131
CviJI RGCY 6 cut(s) 64, 76, 88, 109, 140, 309
CviKI_1 RGCY 6 cut(s) 64, 76, 88, 109, 140, 309
CviQI GTAC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 97, 110
Eco47I GGWCC 2 cut(s) 7, 151
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 97, 110
ErhI CCWWGG 2 cut(s) 97, 110
FaeI CATG 2 cut(s) 43, 134
FaiI YATR 3 cut(s) 41, 93, 132
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 2 cut(s) 39, 130
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 86
FokI GGATG 3 cut(s) 83, 151, 286
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 154
HaeIII GGCC 2 cut(s) 64, 109
HhaI GCGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 43, 134
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
Hpy166II GTNNAC 2 cut(s) 55, 121
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 2 cut(s) 29, 149
Hpy8I GTNNAC 2 cut(s) 55, 121
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 6, 155
HpyCH4III ACNGT 2 cut(s) 7, 246
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 43, 134
HspAI GCGC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 6 cut(s) 42, 109, 134, 157, 184, 291
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 57
MboII GAAGA 1 cut(s) 197
MfeI CAATTG 1 cut(s) 268
MluCI AATT 4 cut(s) 33, 252, 268, 282
MnlI CCTC 5 cut(s) 43, 61, 172, 178, 181
MspR9I CCNGG 1 cut(s) 172
MunI CAATTG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 82
NlaIII CATG 2 cut(s) 43, 134
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 43
PciI ACATGT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PkrI GCNGC 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 151
PscI ACATGT 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 3 cut(s) 7, 63, 151
PspPPI RGGWCCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SatI GCNGC 1 cut(s) 86
Sau96I GGNCC 3 cut(s) 7, 63, 151
ScrFI CCNGG 1 cut(s) 172
SetI ASST 6 cut(s) 54, 60, 78, 90, 192, 222
SinI GGWCC 2 cut(s) 7, 151
Sse9I AATT 4 cut(s) 33, 252, 268, 282
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 2 cut(s) 97, 110
TaaI ACNGT 2 cut(s) 7, 246
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 192
TasI AATT 4 cut(s) 33, 252, 268, 282
TscAI CASTG 1 cut(s) 128
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 7, 151
XapI RAATTY 1 cut(s) 282
XceI RCATGY 1 cut(s) 43
XmaJI CCTAGG 1 cut(s) 110
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.