MD08G1072400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000260
Physical Location & Seq
Forward (+)
5837060 .. 5838947
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1072400.v1.1.491

Sequence Viewer

Length: 657 bp
ATGTCACACCTCATTAAAACCCGGAGGGCGATGACTTCTACACTTAGTCCAACGACTACACCTACTACTGCCGCTATTGCTCCGGCAGAGATGGACCATAGGCCGGTTAATTCGGTTGACCCAGTTGGTCCTTCAGTCCCATATGCACATGCATCATCAACTTCTTCGGTGGTGTTAGCTGTTAACGCCCGACGTACTCACCGGCGCCCCCGTACTACGGACCAGATGTCACCATCGGGATCCACAACCGATGCCTCAGGTACACGGCCAGCGAAGAAAAACACCCGGGGACCTTGTCGACAATTGAAGACAGCAAAGGTCACCCGGGTGACCAACAGTCATATCTCAATCGAATACAATGAGCGACATCGGGTAGCACCAACTGCGGAGCAGCATAGTGCATTGGCCCACAACATTGGGCATGTCGTGCGAACCTTTTGCCCTATGCGGTGGAAGTCTTGGAAGGCGATGCTAGAGGAGATGAAGAACACGGTGCGCAACCAATTACAAACTACGATTTGGAGGACATGGACAAGGACATGTTCGCATACCTCAATCGGCTTTTCTCCGAATGCTACAAGCAGTCGAAGAGCGACCTGCACCAATGTTTCCAGCAATTTGATGATCCGCAGGTCGCTCTCGAGGAGGGTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

219

Amino Acids

24.24

Weight (kDa)

11.69

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 497
Acc36I ACCTGC 2 cut(s) 605, 621
AccB1I GGYRCC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 298
AciI CCGC 4 cut(s) 72, 386, 448, 628
AclWI GGATC 3 cut(s) 234, 247, 619
AcoI YGGCCR 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 3 cut(s) 196, 214, 262
AfiI CCNNNNNNNGG 2 cut(s) 103, 217
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 1 cut(s) 307
AhdI GACNNNNNGTC 2 cut(s) 226, 336
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
AlwI GGATC 3 cut(s) 234, 247, 619
Ama87I CYCGRG 3 cut(s) 285, 324, 640
AoxI GGCC 3 cut(s) 101, 266, 405
ApeKI GCWGC 1 cut(s) 391
AspLEI GCGC 2 cut(s) 207, 498
AspS9I GGNCC 5 cut(s) 94, 128, 220, 290, 406
AsuC2I CCSGG 5 cut(s) 22, 286, 287, 325, 326
AsuHPI GGTGA 4 cut(s) 191, 222, 313, 340
AvaI CYCGRG 3 cut(s) 285, 324, 640
AvaII GGWCC 4 cut(s) 94, 128, 220, 290
AxyI CCTNAGG 1 cut(s) 256
BamHI GGATCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 85, 241
BceAI ACGGC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BcnI CCSGG 5 cut(s) 22, 286, 287, 325, 326
BfaI CTAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 2 cut(s) 605, 621
BisI GCNGC 2 cut(s) 72, 392
BlsI GCNGC 2 cut(s) 73, 393
Bme1390I CCNGG 5 cut(s) 22, 286, 287, 325, 326
Bme18I GGWCC 4 cut(s) 94, 128, 220, 290
BmeRI GACNNNNNGTC 2 cut(s) 226, 336
BmeT110I CYCGRG 3 cut(s) 285, 324, 640
BmgT120I GGNCC 5 cut(s) 94, 128, 220, 290, 406
BmiI GGNNCC 3 cut(s) 206, 241, 291
BmrFI CCNGG 5 cut(s) 22, 286, 287, 325, 326
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 161, 241, 459
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 314
BpuMI CCSGG 5 cut(s) 22, 286, 287, 325, 326
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 285, 286, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 217
Bse118I RCCGGY 2 cut(s) 103, 201
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 285, 286, 324
BseLI CCNNNNNNNGG 2 cut(s) 103, 217
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 491
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 583
BshFI GGCC 3 cut(s) 103, 268, 407
BshNI GGYRCC 1 cut(s) 204
BsiHKCI CYCGRG 3 cut(s) 285, 324, 640
BsiSI CCGG 6 cut(s) 22, 83, 104, 202, 286, 325
BslFI GGGAC 2 cut(s) 122, 303
BslI CCNNNNNNNGG 2 cut(s) 103, 217
BsmFI GGGAC 2 cut(s) 122, 303
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 3 cut(s) 103, 268, 407
BsoBI CYCGRG 3 cut(s) 285, 324, 640
Bsp143I GATC 2 cut(s) 239, 624
BspACI CCGC 4 cut(s) 72, 386, 448, 628
BspANI GGCC 3 cut(s) 103, 268, 407
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 206, 241, 291
BspMI ACCTGC 2 cut(s) 605, 621
BspPI GGATC 3 cut(s) 234, 247, 619
BspQI GCTCTTC 1 cut(s) 583
BspT107I GGYRCC 1 cut(s) 204
BsrFI RCCGGY 2 cut(s) 103, 201
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 2 cut(s) 103, 201
BssECI CCNNGG 3 cut(s) 285, 286, 324
BssMI GATC 2 cut(s) 239, 624
BssNI GRCGYC 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 338, 493
Bst6I CTCTTC 1 cut(s) 583
BstACI GRCGYC 1 cut(s) 205
BstAPI GCANNNNNTGC 2 cut(s) 383, 427
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 44, 256
BstEII GGTNACC 2 cut(s) 319, 328
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 2 cut(s) 207, 498
BstKTI GATC 2 cut(s) 242, 627
BstMBI GATC 2 cut(s) 239, 624
BstMWI GCNNNNNNNGC 4 cut(s) 77, 185, 383, 427
BstNSI RCATGY 3 cut(s) 152, 425, 543
BstPI GGTNACC 2 cut(s) 319, 328
BstSCI CCNGG 5 cut(s) 20, 284, 285, 323, 324
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 256
BsuRI GGCC 3 cut(s) 103, 268, 407
BtgZI GCGATG 2 cut(s) 44, 482
BveI ACCTGC 2 cut(s) 605, 621
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 2 cut(s) 207, 498
Cfr10I RCCGGY 2 cut(s) 103, 201
Cfr13I GGNCC 5 cut(s) 94, 128, 220, 290, 406
Cfr9I CCCGGG 2 cut(s) 285, 324
Csp6I GTAC 3 cut(s) 195, 213, 261
CviAII CATG 4 cut(s) 149, 422, 528, 540
CviJI RGCY 5 cut(s) 103, 179, 268, 407, 561
CviKI_1 RGCY 5 cut(s) 103, 179, 268, 407, 561
CviQI GTAC 3 cut(s) 195, 213, 261
DdeI CTNAG 2 cut(s) 44, 256
DinI GGCGCC 1 cut(s) 206
DpnI GATC 2 cut(s) 241, 626
DpnII GATC 2 cut(s) 239, 624
DriI GACNNNNNGTC 2 cut(s) 226, 336
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 583
Eam1105I GACNNNNNGTC 2 cut(s) 226, 336
EarI CTCTTC 1 cut(s) 583
Eco47I GGWCC 4 cut(s) 94, 128, 220, 290
Eco57I CTGAAG 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 256
Eco88I CYCGRG 3 cut(s) 285, 324, 640
Eco91I GGTNACC 2 cut(s) 319, 328
EcoO109I RGGNCCY 1 cut(s) 290
EcoO65I GGTNACC 2 cut(s) 319, 328
EcoT22I ATGCAT 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
FaeI CATG 4 cut(s) 152, 425, 531, 543
FaqI GGGAC 2 cut(s) 122, 303
FatI CATG 4 cut(s) 148, 421, 527, 539
FauNDI CATATG 1 cut(s) 142
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 72, 392
Fsp4HI GCNGC 2 cut(s) 72, 392
FspBI CTAG 1 cut(s) 473
FspI TGCGCA 1 cut(s) 497
GlaI GCGC 2 cut(s) 206, 497
GluI GCNGC 2 cut(s) 72, 392
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 3 cut(s) 103, 268, 407
HapII CCGG 6 cut(s) 22, 83, 104, 202, 286, 325
HhaI GCGC 2 cut(s) 207, 498
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 4 cut(s) 152, 425, 531, 543
Hin6I GCGC 2 cut(s) 205, 496
HinP1I GCGC 2 cut(s) 205, 496
HincII GTYRAC 3 cut(s) 118, 184, 299
HindII GTYRAC 3 cut(s) 118, 184, 299
HpaI GTTAAC 1 cut(s) 184
HpaII CCGG 6 cut(s) 22, 83, 104, 202, 286, 325
HphI GGTGA 4 cut(s) 191, 222, 313, 340
Hpy166II GTNNAC 4 cut(s) 118, 184, 263, 299
Hpy188I TCNGA 2 cut(s) 570, 656
Hpy188III TCNNGA 2 cut(s) 237, 640
Hpy8I GTNNAC 4 cut(s) 118, 184, 263, 299
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 141, 457
HpyCH4III ACNGT 2 cut(s) 338, 493
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 4 cut(s) 146, 152, 401, 600
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 185, 383, 427
HpyF3I CTNAG 2 cut(s) 44, 256
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 4 cut(s) 152, 425, 531, 543
HspAI GCGC 2 cut(s) 205, 496
KasI GGCGCC 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 239, 624
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 2 cut(s) 85, 388
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 3 cut(s) 161, 241, 459
MaeI CTAG 1 cut(s) 473
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 4 cut(s) 3, 228, 319, 328
MalI GATC 2 cut(s) 241, 626
MboI GATC 2 cut(s) 239, 624
MboII GAAGA 5 cut(s) 156, 286, 319, 496, 600
MfeI CAATTG 1 cut(s) 302
MflI RGATCY 1 cut(s) 239
MluCI AATT 4 cut(s) 109, 302, 503, 616
Mly113I GGCGCC 1 cut(s) 205
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 8 cut(s) 18, 20, 265, 469, 516, 562, 636, 639
Mph1103I ATGCAT 1 cut(s) 154
MseI TTAA 3 cut(s) 15, 108, 183
MslI CAYNNNNRTG 1 cut(s) 326
MspI CCGG 6 cut(s) 22, 83, 104, 202, 286, 325
MspR9I CCNGG 5 cut(s) 22, 286, 287, 325, 326
MunI CAATTG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 577
MwoI GCNNNNNNNGC 4 cut(s) 77, 185, 383, 427
NarI GGCGCC 1 cut(s) 205
NciI CCSGG 5 cut(s) 22, 286, 287, 325, 326
NdeI CATATG 1 cut(s) 142
NdeII GATC 2 cut(s) 239, 624
NlaIII CATG 4 cut(s) 152, 425, 531, 543
NlaIV GGNNCC 3 cut(s) 206, 241, 291
NmuCI GTSAC 4 cut(s) 3, 228, 319, 328
NsbI TGCGCA 1 cut(s) 497
NsiI ATGCAT 1 cut(s) 154
NspI RCATGY 3 cut(s) 152, 425, 543
OliI CACNNNNGTG 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 640
PciI ACATGT 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 583
PctI GAATGC 1 cut(s) 577
PflFI GACNNNGTC 1 cut(s) 294
PkrI GCNGC 2 cut(s) 73, 393
PluTI GGCGCC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 290
PscI ACATGT 1 cut(s) 539
Psp5II RGGWCCY 1 cut(s) 290
PspEI GGTNACC 2 cut(s) 319, 328
PspN4I GGNNCC 3 cut(s) 206, 241, 291
PspPI GGNCC 5 cut(s) 94, 128, 220, 290, 406
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 294
RsaI GTAC 3 cut(s) 196, 214, 262
RsaNI GTAC 3 cut(s) 195, 213, 261
RseI CAYNNNNRTG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 3 cut(s) 15, 108, 183
SatI GCNGC 2 cut(s) 72, 392
Sau3AI GATC 2 cut(s) 239, 624
Sau96I GGNCC 5 cut(s) 94, 128, 220, 290, 406
ScrFI CCNGG 5 cut(s) 22, 286, 287, 325, 326
SfaNI GCATC 3 cut(s) 161, 241, 459
SfoI GGCGCC 1 cut(s) 206
Sfr274I CTCGAG 1 cut(s) 640
SgrAI CRCCGGYG 1 cut(s) 201
SinI GGWCC 4 cut(s) 94, 128, 220, 290
SlaI CTCGAG 1 cut(s) 640
SmaI CCCGGG 2 cut(s) 287, 326
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 640
SmoI CTYRAG 1 cut(s) 640
Sse9I AATT 4 cut(s) 109, 302, 503, 616
SsiI CCGC 4 cut(s) 72, 386, 448, 628
SspDI GGCGCC 1 cut(s) 204
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 5 cut(s) 20, 284, 285, 323, 324
TaaI ACNGT 2 cut(s) 338, 493
TaiI ACGT 1 cut(s) 196
TaqI TCGA 4 cut(s) 298, 351, 586, 641
TasI AATT 4 cut(s) 109, 302, 503, 616
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 15, 108, 183
Tru9I TTAA 3 cut(s) 15, 108, 183
TseFI GTSAC 4 cut(s) 3, 228, 319, 328
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 4 cut(s) 3, 228, 319, 328
TspDTI ATGAA 1 cut(s) 497
TspGWI ACGGA 1 cut(s) 233
TspMI CCCGGG 2 cut(s) 285, 324
Tth111I GACNNNGTC 1 cut(s) 294
VpaK11BI GGWCC 4 cut(s) 94, 128, 220, 290
XceI RCATGY 3 cut(s) 152, 425, 543
XhoI CTCGAG 1 cut(s) 640
XmaI CCCGGG 2 cut(s) 285, 324
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 1 cut(s) 473
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.