MD03G1154200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
17701475 .. 17701785
311 bp
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UTR
Exon/CDS
Intron
MD03G1154200.v1.1.491

Sequence Viewer

Length: 147 bp
ATGCGGTGGAAGTCTTGGAAGGCGATGCCGGAGGAGGTGAAGAACACAGTGCACAATCATTTGTCGACAACCTACAATTTCGATAACATCAACGAGGAAATGTTGGCGTACCTCAATCAACTCTTCTCTGAACGTTACAAGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

49

Amino Acids

5.95

Weight (kDa)

6.82

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 65
AciI CCGC 1 cut(s) 4
AclI AACGTT 1 cut(s) 133
AfaI GTAC 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 54
Alw44I GTGCAC 1 cut(s) 50
ApaLI GTGCAC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BfaI CTAG 1 cut(s) 145
BmsI GCATC 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 54
BspACI CCGC 1 cut(s) 4
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 128
BstSLI GKGCMC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 54
Csp6I GTAC 1 cut(s) 109
CviQI GTAC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 65
FspBI CTAG 1 cut(s) 145
FspEI CC 9 cut(s) 5, 14, 17, 20, 42, 80, 85, 89, 125
HapII CCGG 1 cut(s) 29
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 52, 66
Hpy188I TCNGA 1 cut(s) 130
Hpy8I GTNNAC 2 cut(s) 52, 66
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 133
LpnPI CCDG 1 cut(s) 42
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 145
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 134
MboII GAAGA 2 cut(s) 52, 115
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 1 cut(s) 76
MnlI CCTC 4 cut(s) 25, 28, 88, 122
MspI CCGG 1 cut(s) 29
Psp1406I AACGTT 1 cut(s) 133
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 39, 74, 114, 136
SfaNI GCATC 1 cut(s) 15
SgeI CNNG 3 cut(s) 27, 41, 106
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 136
TaqI TCGA 2 cut(s) 65, 81
TasI AATT 1 cut(s) 76
TscAI CASTG 1 cut(s) 54
TspRI CASTG 1 cut(s) 54
VneI GTGCAC 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.