MD17G1200600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
24233568 .. 24233831
264 bp
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UTR
Exon/CDS
Intron
MD17G1200600.v1.1.491

Sequence Viewer

Length: 201 bp
ATGAAGAAAGAGACTTGGGTCAACTTCAATATCGACATAGAAGTGCGGGGTATGTTCGAGTACACAAACCAGGTATGGTTTGAGCAGTACAAGGAGTGGAAATACGAGCTACTCATATACTACCAGACTTGTTCATTTCTTGTTGAAGTTCTGACCGATCCACCTCTAGAGTTTGGGGAAATGAAAGACGAGTGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

8.34

Weight (kDa)

4.31

Isoelectric Point (pI)

9.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AclWI GGATC 1 cut(s) 152
AfaI GTAC 3 cut(s) 62, 89, 197
AgsI TTSAA 2 cut(s) 28, 146
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 2 cut(s) 167, 199
Bme1390I CCNGG 1 cut(s) 71
BmrFI CCNGG 1 cut(s) 71
BoxI GACNNNNGTC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 1 cut(s) 46
BspPI GGATC 1 cut(s) 152
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 71
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 69
CsiI ACCWGGT 1 cut(s) 69
Csp6I GTAC 3 cut(s) 61, 88, 196
CviJI RGCY 1 cut(s) 109
CviKI_1 RGCY 1 cut(s) 109
CviQI GTAC 3 cut(s) 61, 88, 196
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 69
FaiI YATR 5 cut(s) 38, 53, 76, 116, 118
FauI CCCGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 167, 199
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 22, 63
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 2 cut(s) 22, 63
Kzo9I GATC 1 cut(s) 157
LpnPI CCDG 3 cut(s) 56, 83, 137
MabI ACCWGGT 1 cut(s) 69
MaeI CTAG 2 cut(s) 167, 199
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 1 cut(s) 16
MnlI CCTC 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
NdeII GATC 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
RsaI GTAC 3 cut(s) 62, 89, 197
RsaNI GTAC 3 cut(s) 61, 88, 196
RseI CAYNNNNRTG 1 cut(s) 41
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 71
SetI ASST 3 cut(s) 75, 111, 166
SexAI ACCWGGT 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 41
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 167, 199
StyD4I CCNGG 1 cut(s) 69
TaqI TCGA 2 cut(s) 33, 57
TaqII GACCGA 1 cut(s) 170
TatI WGTACW 2 cut(s) 60, 87
TspDTI ATGAA 3 cut(s) 17, 123, 197
XbaI TCTAGA 1 cut(s) 166
XspI CTAG 2 cut(s) 167, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.