pycom13g23040

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
20746982 .. 20747383
402 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g23040.2

Sequence Viewer

Length: 318 bp
ATGTTCAAGGAGGTGTATGTTCGGCCCGAGGATGAGCTGACGGAGCAGCTTCATTTAATCCACCATGGTGGAGAAGGGCCAGACCGTTCTGAAGAAGGTGGCTTCCCAGCTTCCCCTAGAGACCCCGATCGAGGAGGTGTTTCCCCTAAGGATGTCGGTTTTCAGATCATAAAAGAGACACTCGATCAGACCCTCAGTCTTAGGCATAGGAATGTTCAACGGGGGCTTGGGAAAGCCCGCCTTCGGGACCCGTCTGCCTCATCATCCAGACAGATAATAGAAGAGGTCAAAACCCTAACATCTGAAGTGGCGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.7

Weight (kDa)

5.56

Isoelectric Point (pI)

57.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 238, 311
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 131, 243, 244
AgsI TTSAA 2 cut(s) 7, 218
AhdI GACNNNNNGTC 1 cut(s) 195
AleI CACNNNNGTG 1 cut(s) 66
AluBI AGCT 3 cut(s) 37, 49, 110
AluI AGCT 3 cut(s) 37, 49, 110
Alw26I GTCTC 2 cut(s) 114, 170
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 23, 77
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 24, 77, 247
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 147
BbvI GCAGC 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 114, 170
BfaI CTAG 2 cut(s) 117, 316
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 247
BmeRI GACNNNNNGTC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 24, 77, 247
BmiI GGNNCC 2 cut(s) 248, 249
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 27, 64
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 243, 244
Bse21I CCTNAGG 1 cut(s) 147
BseDI CCNNGG 2 cut(s) 27, 64
BseGI GGATG 3 cut(s) 37, 157, 263
BseLI CCNNNNNNNGG 3 cut(s) 131, 243, 244
BseMII CTCAG 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 106
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 25, 79
BsiEI CGRYCG 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 3 cut(s) 131, 243, 244
BsmAI GTCTC 2 cut(s) 114, 170
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 25, 79
Bso31I GGTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 26
Bsp143I GATC 3 cut(s) 127, 165, 184
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 2 cut(s) 238, 311
BspANI GGCC 2 cut(s) 25, 79
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 248, 249
BspTNI GGTCTC 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 27, 64
BssMI GATC 3 cut(s) 127, 165, 184
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 238
BstDEI CTNAG 3 cut(s) 147, 194, 200
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 3 cut(s) 37, 157, 263
BstKTI GATC 3 cut(s) 130, 168, 187
BstMAI GTCTC 2 cut(s) 114, 170
BstMBI GATC 3 cut(s) 127, 165, 184
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 25, 79
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 37, 157, 263
Cac8I GCNNGC 1 cut(s) 238
Cfr13I GGNCC 3 cut(s) 24, 77, 247
CviAII CATG 1 cut(s) 65
CviJI RGCY 8 cut(s) 25, 37, 49, 79, 102, 110, 226, 236
CviKI_1 RGCY 8 cut(s) 25, 37, 49, 79, 102, 110, 226, 236
DdeI CTNAG 3 cut(s) 147, 194, 200
DpnI GATC 3 cut(s) 129, 167, 186
DpnII GATC 3 cut(s) 127, 165, 184
DriI GACNNNNNGTC 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 276
Eam1105I GACNNNNNGTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 68
FaiI YATR 4 cut(s) 18, 66, 170, 207
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 64
FauI CCCGC 1 cut(s) 245
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 3 cut(s) 44, 164, 250
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 2 cut(s) 117, 316
GluI GCNGC 1 cut(s) 47
GsaI CCCAGC 1 cut(s) 110
HaeIII GGCC 2 cut(s) 25, 79
Hin1II CATG 1 cut(s) 68
Hpy188I TCNGA 4 cut(s) 91, 165, 189, 304
Hpy188III TCNNGA 2 cut(s) 245, 267
HpyAV CCTTC 3 cut(s) 68, 89, 251
HpyCH4III ACNGT 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 3 cut(s) 147, 194, 200
Hsp92II CATG 1 cut(s) 68
KflI GGGWCCC 1 cut(s) 247
Kzo9I GATC 3 cut(s) 127, 165, 184
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 93, 120, 280
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 2 cut(s) 117, 316
MalI GATC 3 cut(s) 129, 167, 186
MboI GATC 3 cut(s) 127, 165, 184
MboII GAAGA 2 cut(s) 104, 293
MnlI CCTC 7 cut(s) 4, 22, 125, 128, 203, 268, 277
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 2 cut(s) 66, 210
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 64
NdeII GATC 3 cut(s) 127, 165, 184
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 248, 249
OliI CACNNNNGTG 1 cut(s) 66
PkrI GCNGC 1 cut(s) 48
Ple19I CGATCG 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 248, 249
PspPI GGNCC 3 cut(s) 24, 77, 247
PspPPI RGGWCCY 1 cut(s) 247
PvuI CGATCG 1 cut(s) 130
RseI CAYNNNNRTG 2 cut(s) 66, 210
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 127, 165, 184
Sau96I GGNCC 3 cut(s) 24, 77, 247
SetI ASST 7 cut(s) 15, 39, 51, 100, 112, 139, 288
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 66, 210
SsiI CCGC 2 cut(s) 238, 311
SspMI CTAG 2 cut(s) 117, 316
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 130, 183
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 247
XspI CTAG 2 cut(s) 117, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.