pycom08g04050

Cytochrome b6-f complex iron-sulfur subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
3071264 .. 3071900
637 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g04050.3

Sequence Viewer

Length: 357 bp
ATGCGTATAACTCGCGACATCGTGGAGCGGCTACCTCACAACAGCATAGCAGCGTTGCTATCGGAGTCTTGGGCAGACATTCCTGAGGAGACGAGGGAGCTGGTGCGAGACAAGTTGTCGGTCATTTATGATCTTGAGGACATATCCCCTGAGACCATGGCCTATTTAGAGAAGACCTTAGTAATTCAGTACAAACAATGGAAGAACAATTTTCACATGTATTTTAAGCGATGGGATAATCCAAAGATTGCTCGCCTACATGTTCCAACAGAGTTCCAAGATCGGCTAGAGGATTGGGAATGGCTCTGCAAACATTTTACGAACCCAAAATTTGTGAAGAAATCTGCTGTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

119

Amino Acids

14.25

Weight (kDa)

6.42

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 28
AccII CGCG 1 cut(s) 15
AciI CCGC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 329
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 2 cut(s) 216, 259
AhdI GACNNNNNGTC 1 cut(s) 115
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 3 cut(s) 83, 102, 146
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 329
AxyI CCTNAGG 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 62
BccI CCATC 1 cut(s) 225
BcoDI GTCTC 3 cut(s) 83, 102, 146
BfaI CTAG 2 cut(s) 287, 355
BisI GCNGC 2 cut(s) 29, 51
BlsI GCNGC 2 cut(s) 30, 52
BmeRI GACNNNNNGTC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 156
Bse21I CCTNAGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 75, 141
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 161
BsmAI GTCTC 3 cut(s) 83, 102, 146
BsmBI CGTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 130, 280
Bsp19I CCATGG 1 cut(s) 156
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 76, 142
BspFNI CGCG 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 130, 280
BssT1I CCWWGG 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 3 cut(s) 84, 150, 178
BstDSI CCRYGG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 2 cut(s) 133, 283
BstMAI GTCTC 3 cut(s) 83, 102, 146
BstMBI GATC 2 cut(s) 130, 280
BstNSI RCATGY 2 cut(s) 220, 263
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 179
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 244
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 253
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 157, 217, 260
CviJI RGCY 6 cut(s) 31, 100, 161, 286, 304, 354
CviKI_1 RGCY 6 cut(s) 31, 100, 161, 286, 304, 354
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 84, 150, 178
DpnI GATC 2 cut(s) 132, 282
DpnII GATC 2 cut(s) 130, 280
DriI GACNNNNNGTC 1 cut(s) 115
Eam1105I GACNNNNNGTC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 3 cut(s) 160, 220, 263
FaiI YATR 7 cut(s) 8, 47, 129, 143, 158, 218, 261
FatI CATG 3 cut(s) 156, 216, 259
Fnu4HI GCNGC 2 cut(s) 29, 51
Fsp4HI GCNGC 2 cut(s) 29, 51
FspBI CTAG 2 cut(s) 287, 355
GluI GCNGC 2 cut(s) 29, 51
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 3 cut(s) 160, 220, 263
HinfI GANTC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 14, 83, 134
HpyCH4V TGCA 1 cut(s) 309
HpyF3I CTNAG 3 cut(s) 84, 150, 178
Hsp92II CATG 3 cut(s) 160, 220, 263
Kzo9I GATC 2 cut(s) 130, 280
LmnI GCTCC 2 cut(s) 25, 97
LpnPI CCDG 3 cut(s) 86, 96, 162
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 2 cut(s) 287, 355
MalI GATC 2 cut(s) 132, 282
MbiI CCGCTC 1 cut(s) 28
MboI GATC 2 cut(s) 130, 280
MboII GAAGA 3 cut(s) 184, 214, 349
MluCI AATT 3 cut(s) 183, 208, 329
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 5 cut(s) 45, 79, 87, 130, 283
MseI TTAA 1 cut(s) 225
MvnI CGCG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 130, 280
NlaIII CATG 3 cut(s) 160, 220, 263
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 2 cut(s) 220, 263
PciI ACATGT 2 cut(s) 216, 259
PkrI GCNGC 2 cut(s) 30, 52
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PscI ACATGT 2 cut(s) 216, 259
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 29, 51
Sau3AI GATC 2 cut(s) 130, 280
SchI GAGTC 1 cut(s) 74
SetI ASST 3 cut(s) 37, 102, 179
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 183, 208, 329
SsiI CCGC 1 cut(s) 28
SspMI CTAG 2 cut(s) 287, 355
StyI CCWWGG 1 cut(s) 156
TaqII GACCGA 1 cut(s) 109
TasI AATT 3 cut(s) 183, 208, 329
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 1 cut(s) 50
XapI RAATTY 1 cut(s) 329
XceI RCATGY 2 cut(s) 220, 263
XspI CTAG 2 cut(s) 287, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.