pycom09g19450

Plant transposase (Ptta/En/Spm family)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
20306007 .. 20307141
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19450.1

Sequence Viewer

Length: 348 bp
ATGAGCCCTCCAACCTCGATACCAATCAAATGTAGTACATCAATTACCCTTTACTCCGGTAGGTTCACTCAATGGAAGAGCGACCTCCACAAGCATTATGAACTATATTACGGTCCGAAGGTCGCTCTAGCAGTTGGGTGCCCTATAGAGTTGGTGGATCGTCGGGATGAATGGGAGTGGCTCTGCGGCCATTTTCAAGACAAGAAATACCTCATACTCCACCATGGTGGAGAAGGGCTAGACCAATCTAGAGGAGGTGGCTTCCCAGCTTTCCGTAAAGATCCCGATCTAGGAGGTGTTTCCCCTGGGGATGTTGGCTTTCAGATCATGACAGACACACTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

5.9

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AciI CCGC 1 cut(s) 186
AclWI GGATC 2 cut(s) 165, 275
AcoI YGGCCR 1 cut(s) 187
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 197
AjnI CCWGG 1 cut(s) 304
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
AlwI GGATC 2 cut(s) 165, 275
AoxI GGCC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 306
BfaI CTAG 4 cut(s) 128, 239, 249, 290
BfmI CTRYAG 1 cut(s) 144
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 306
BsaBI GATNNNNATC 2 cut(s) 23, 285
BsaJI CCNNGG 3 cut(s) 223, 304, 305
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse8I GATNNNNATC 2 cut(s) 23, 285
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 223, 304, 305
BseGI GGATG 2 cut(s) 172, 316
BseJI GATNNNNATC 2 cut(s) 23, 285
BseLI CCNNNNNNNGG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 143
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 189
BshNI GGYRCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 8, 143
Bsp143I GATC 4 cut(s) 157, 280, 286, 324
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 189
BspHI TCATGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 140
BspPI GGATC 2 cut(s) 165, 275
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 223, 304, 305
BssMI GATC 4 cut(s) 157, 280, 286, 324
BssT1I CCWWGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 172, 316
BstKTI GATC 4 cut(s) 160, 283, 289, 327
BstMBI GATC 4 cut(s) 157, 280, 286, 324
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 172, 316
CciI TCATGA 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 113
CpoI CGGWCCG 1 cut(s) 113
Csp6I GTAC 1 cut(s) 36
CspI CGGWCCG 1 cut(s) 113
CviAII CATG 2 cut(s) 224, 328
CviJI RGCY 7 cut(s) 6, 181, 189, 238, 261, 269, 318
CviKI_1 RGCY 7 cut(s) 6, 181, 189, 238, 261, 269, 318
CviQI GTAC 1 cut(s) 36
DpnI GATC 4 cut(s) 159, 282, 288, 326
DpnII GATC 4 cut(s) 157, 280, 286, 324
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 2 cut(s) 227, 331
FaiI YATR 6 cut(s) 99, 106, 146, 215, 225, 329
FatI CATG 2 cut(s) 223, 327
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 2 cut(s) 179, 323
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 4 cut(s) 128, 239, 249, 290
GluI GCNGC 1 cut(s) 187
GsaI CCCAGC 1 cut(s) 269
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 57
Hin1II CATG 2 cut(s) 227, 331
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 117, 324
Hpy188III TCNNGA 5 cut(s) 164, 197, 249, 284, 328
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 112, 227
HpyCH4III ACNGT 1 cut(s) 113
Hsp92II CATG 2 cut(s) 227, 331
Kzo9I GATC 4 cut(s) 157, 280, 286, 324
LguI GCTCTTC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 70, 279, 291, 318
MaeI CTAG 4 cut(s) 128, 239, 249, 290
MalI GATC 4 cut(s) 159, 282, 288, 326
MboI GATC 4 cut(s) 157, 280, 286, 324
MboII GAAGA 1 cut(s) 88
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 2 cut(s) 8, 143
MluCI AATT 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 7 cut(s) 18, 25, 95, 221, 245, 248, 287
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 223
NdeII GATC 4 cut(s) 157, 280, 286, 324
NlaIII CATG 2 cut(s) 227, 331
NlaIV GGNNCC 1 cut(s) 140
OliI CACNNNNGTG 1 cut(s) 225
PagI TCATGA 1 cut(s) 327
PasI CCCWGGG 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 304
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 225
Rsr2I CGGWCCG 1 cut(s) 113
RsrII CGGWCCG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 4 cut(s) 157, 280, 286, 324
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 8, 143
SetI ASST 8 cut(s) 17, 65, 87, 123, 213, 259, 271, 298
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 186
SspMI CTAG 4 cut(s) 128, 239, 249, 290
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 2 cut(s) 17, 342
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 114, 183
TspGWI ACGGA 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 248
XspI CTAG 4 cut(s) 128, 239, 249, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.