pycom09g14670

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000260
Physical Location & Seq
Forward (+)
14423715 .. 14424181
467 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g14670.2

Sequence Viewer

Length: 333 bp
ATGTCGCAGTTGATCACTTGTCGTCGGAGTGTGACCAATGCACCTCCTGCATTATCAGCATCTACGGCTCCAGCCGTGAGTGCTCCATTGATTAGCGAGCCTACACCCTTTGCTGAGGCCACTCCTACGGCGTCCCAGGTGCCCGTATCATCGACGTCATCAGTGTCAATTGAGCAGCTCAGTGCACGGCGGCCTCATCGGCGGCGCCGTGAGCCGGAACCTTCTGATCACACTTCTTCGGAATCCAGAGTCGAGTGTGAGGCCTCCCATCCAGGTTTTGGAAAATGCTATACTATTACGGAAGGTTGTGTCGAATTTTTTTTACAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

111

Amino Acids

11.81

Weight (kDa)

6.27

Isoelectric Point (pI)

94.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 139, 204
AccB7I CCANNNNNTGG 1 cut(s) 278
AciI CCGC 2 cut(s) 190, 202
AcsI RAATTY 2 cut(s) 314, 327
AcyI GRCGYC 3 cut(s) 131, 155, 205
AfiI CCNNNNNNNGG 2 cut(s) 214, 278
AjnI CCWGG 2 cut(s) 135, 271
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw21I GWGCWC 2 cut(s) 85, 187
Alw44I GTGCAC 1 cut(s) 183
AoxI GGCC 3 cut(s) 117, 191, 261
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 2 cut(s) 314, 327
AspLEI GCGC 1 cut(s) 207
BaeGI GKGCMC 2 cut(s) 144, 187
BanI GGYRCC 2 cut(s) 139, 204
Bbv12I GWGCWC 2 cut(s) 85, 187
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 187
BccI CCATC 1 cut(s) 276
BceAI ACGGC 5 cut(s) 59, 81, 144, 192, 203
BciT130I CCWGG 2 cut(s) 137, 273
BclI TGATCA 2 cut(s) 12, 226
BfoI RGCGCY 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 3 cut(s) 176, 191, 203
BlsI GCNGC 3 cut(s) 177, 192, 204
Bme1390I CCNGG 2 cut(s) 137, 273
BmiI GGNNCC 4 cut(s) 69, 141, 206, 219
BmrFI CCNGG 2 cut(s) 137, 273
BmsI GCATC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 54
Bpu10I CCTNAGC 1 cut(s) 114
BsaHI GRCGYC 3 cut(s) 131, 155, 205
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 278
BseBI CCWGG 2 cut(s) 137, 273
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 214, 278
BseMII CTCAG 2 cut(s) 105, 193
BseSI GKGCMC 2 cut(s) 144, 187
BseXI GCAGC 1 cut(s) 187
BshFI GGCC 3 cut(s) 119, 193, 263
BshNI GGYRCC 2 cut(s) 139, 204
BsiHKAI GWGCWC 2 cut(s) 85, 187
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 214, 278
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 3 cut(s) 119, 193, 263
Bsp1286I GDGCHC 3 cut(s) 85, 144, 187
Bsp143I GATC 2 cut(s) 12, 226
BspACI CCGC 2 cut(s) 190, 202
BspANI GGCC 3 cut(s) 119, 193, 263
BspCNI CTCAG 2 cut(s) 106, 192
BspLI GGNNCC 4 cut(s) 69, 141, 206, 219
BspT107I GGYRCC 2 cut(s) 139, 204
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 12, 226
BssNI GRCGYC 3 cut(s) 131, 155, 205
Bst2UI CCWGG 2 cut(s) 137, 273
BstACI GRCGYC 3 cut(s) 131, 155, 205
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 2 cut(s) 114, 179
BstF5I GGATG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 2 cut(s) 15, 229
BstMBI GATC 2 cut(s) 12, 226
BstMWI GCNNNNNNNGC 6 cut(s) 47, 56, 65, 80, 199, 211
BstNI CCWGG 2 cut(s) 137, 273
BstSCI CCNGG 2 cut(s) 135, 271
BstSLI GKGCMC 2 cut(s) 144, 187
BstV1I GCAGC 1 cut(s) 187
BsuRI GGCC 3 cut(s) 119, 193, 263
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 168, 187
Cac8I GCNNGC 1 cut(s) 98
CfoI GCGC 1 cut(s) 207
CseI GACGC 1 cut(s) 120
CviJI RGCY 8 cut(s) 68, 74, 100, 119, 178, 193, 214, 263
CviKI_1 RGCY 8 cut(s) 68, 74, 100, 119, 178, 193, 214, 263
DdeI CTNAG 2 cut(s) 114, 179
DinI GGCGCC 1 cut(s) 206
DpnI GATC 2 cut(s) 14, 228
DpnII GATC 2 cut(s) 12, 226
Eco147I AGGCCT 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 135, 271
EgeI GGCGCC 1 cut(s) 206
EheI GGCGCC 1 cut(s) 206
FaiI YATR 1 cut(s) 291
FaqI GGGAC 1 cut(s) 118
FbaI TGATCA 2 cut(s) 12, 226
Fnu4HI GCNGC 3 cut(s) 176, 191, 203
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 176, 191, 203
GlaI GCGC 1 cut(s) 206
GluI GCNGC 3 cut(s) 176, 191, 203
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 3 cut(s) 119, 193, 263
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 3 cut(s) 131, 155, 205
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 2 cut(s) 242, 249
HpaII CCGG 1 cut(s) 215
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 3 cut(s) 27, 226, 241
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 2 cut(s) 27, 157
HpyAV CCTTC 2 cut(s) 231, 296
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 41, 50, 185
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 56, 65, 80, 199, 211
HpyF3I CTNAG 2 cut(s) 114, 179
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 3 cut(s) 131, 155, 205
HspAI GCGC 1 cut(s) 205
KasI GGCGCC 1 cut(s) 204
Ksp22I TGATCA 2 cut(s) 12, 226
Kzo9I GATC 2 cut(s) 12, 226
LmnI GCTCC 2 cut(s) 73, 88
LpnPI CCDG 8 cut(s) 60, 84, 122, 149, 228, 258, 259, 285
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 68
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 14, 228
MboI GATC 2 cut(s) 12, 226
MboII GAAGA 1 cut(s) 228
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 3 cut(s) 85, 144, 187
MluCI AATT 3 cut(s) 168, 314, 327
Mly113I GGCGCC 1 cut(s) 205
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 5 cut(s) 54, 109, 204, 253, 274
MseI TTAA 1 cut(s) 331
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 137, 273
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 2 cut(s) 137, 273
MwoI GCNNNNNNNGC 6 cut(s) 47, 56, 65, 80, 199, 211
NarI GGCGCC 1 cut(s) 205
NdeII GATC 2 cut(s) 12, 226
NlaIV GGNNCC 4 cut(s) 69, 141, 206, 219
NmuCI GTSAC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 1 cut(s) 242
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 3 cut(s) 177, 192, 204
PleI GAGTC 1 cut(s) 257
PluTI GGCGCC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 135, 271
PspGI CCWGG 2 cut(s) 135, 271
PspN4I GGNNCC 4 cut(s) 69, 141, 206, 219
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 3 cut(s) 176, 191, 203
Sau3AI GATC 2 cut(s) 12, 226
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 2 cut(s) 137, 273
SduI GDGCHC 3 cut(s) 85, 144, 187
SetI ASST 7 cut(s) 46, 141, 158, 180, 223, 277, 307
SfaNI GCATC 1 cut(s) 68
SfoI GGCGCC 1 cut(s) 206
Sse9I AATT 3 cut(s) 168, 314, 327
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 2 cut(s) 190, 202
SspDI GGCGCC 1 cut(s) 204
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 135, 271
TaiI ACGT 1 cut(s) 158
TaqI TCGA 3 cut(s) 152, 252, 312
TasI AATT 3 cut(s) 168, 314, 327
TauI GCSGC 2 cut(s) 193, 205
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 2 cut(s) 168, 187
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 31
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 168, 187
Van91I CCANNNNNTGG 1 cut(s) 278
VneI GTGCAC 1 cut(s) 183
XapI RAATTY 2 cut(s) 314, 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.