MD04G1054700.v1.1

oxidoreductase activity, acting on superoxide radicals as acceptor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
6560009 .. 6560577
569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1054700.v1.1.491

Sequence Viewer

Length: 279 bp
ATGCCCCGCCCAATATTACTTACTAGGCATGGAGAGAGTAAGGATAATGTTAGAGGCAGAATTGGAGAAGACAATCCTTTGAGGTTTGAAGAAGTGACAACCCTAAGGGGTCAGCTTGCGGTCCATGGCGAGCAGGTTGAGGAGATGAAGGCCTATGTCGGGCACATGAGAGATCTTGTACGAGCCATACAGATGTCCGACCTCCAAATCTCGCTACCAATACCTAATCTTGCTACATCTTCAACCTTCGAGCCATTTCACTCTGCCAATACCCAGTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.38

Weight (kDa)

6.04

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AciI CCGC 2 cut(s) 7, 119
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 2 cut(s) 89, 243
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AoxI GGCC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
AxyI CCTNAGG 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 75
BfaI CTAG 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 124
BglII AGATCT 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 274
Bse21I CCTNAGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 165
BshFI GGCC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 159
BsnI GGCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 2 cut(s) 7, 119
BspANI GGCC 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 117, 131
BstDEI CTNAG 1 cut(s) 104
BstDSI CCRYGG 1 cut(s) 124
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 165
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 104
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 117, 131
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 179
CviAII CATG 3 cut(s) 29, 125, 166
CviJI RGCY 4 cut(s) 115, 152, 185, 253
CviKI_1 RGCY 4 cut(s) 115, 152, 185, 253
CviQI GTAC 1 cut(s) 179
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 121
Eco81I CCTNAGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 32, 128, 169
FaiI YATR 5 cut(s) 30, 126, 156, 167, 188
FatI CATG 3 cut(s) 28, 124, 165
FauI CCCGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 24
HaeIII GGCC 1 cut(s) 152
Hin1II CATG 3 cut(s) 32, 128, 169
Hpy188I TCNGA 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 142, 256
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 3 cut(s) 32, 128, 169
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 1 cut(s) 119
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 94
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 3 cut(s) 80, 101, 231
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 165
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 4 cut(s) 47, 75, 133, 212
MslI CAYNNNNRTG 1 cut(s) 191
NcoI CCATGG 1 cut(s) 124
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 32, 128, 169
NmuCI GTSAC 1 cut(s) 94
PceI AGGCCT 1 cut(s) 152
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 191
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 165
SetI ASST 6 cut(s) 86, 117, 138, 204, 226, 248
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 60
SseBI AGGCCT 1 cut(s) 152
SsiI CCGC 2 cut(s) 7, 119
SspI AATATT 1 cut(s) 15
SspMI CTAG 1 cut(s) 24
StuI AGGCCT 1 cut(s) 152
StyI CCWWGG 1 cut(s) 124
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 60
TseFI GTSAC 1 cut(s) 94
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 121
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.