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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 120 |
| AclWI | GGATC | 2 cut(s) | 142, 174 |
| AcuI | CTGAAG | 1 cut(s) | 128 |
| AcyI | GRCGYC | 1 cut(s) | 117 |
| AfaI | GTAC | 1 cut(s) | 126 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 112, 157, 260 |
| AflIII | ACRYGT | 1 cut(s) | 233 |
| AgsI | TTSAA | 1 cut(s) | 7 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AluBI | AGCT | 3 cut(s) | 49, 91, 175 |
| AluI | AGCT | 3 cut(s) | 49, 91, 175 |
| Alw21I | GWGCWC | 1 cut(s) | 62 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| AlwI | GGATC | 2 cut(s) | 142, 174 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 151 |
| Ama87I | CYCGRG | 1 cut(s) | 128 |
| AoxI | GGCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 2 cut(s) | 46, 88 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AvaI | CYCGRG | 1 cut(s) | 128 |
| BbsI | GAAGAC | 2 cut(s) | 107, 134 |
| Bbv12I | GWGCWC | 1 cut(s) | 62 |
| BbvI | GCAGC | 2 cut(s) | 58, 100 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BclI | TGATCA | 1 cut(s) | 19 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 249 |
| BisI | GCNGC | 2 cut(s) | 47, 89 |
| BlsI | GCNGC | 2 cut(s) | 48, 90 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmeT110I | CYCGRG | 1 cut(s) | 128 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 92 |
| BpiI | GAAGAC | 2 cut(s) | 107, 134 |
| BsaHI | GRCGYC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 2 cut(s) | 129, 162 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 112, 157, 260 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseDI | CCNNGG | 2 cut(s) | 129, 162 |
| BseGI | GGATG | 1 cut(s) | 139 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 112, 157, 260 |
| BseMII | CTCAG | 1 cut(s) | 147 |
| BseXI | GCAGC | 2 cut(s) | 58, 100 |
| Bsh1285I | CGRYCG | 2 cut(s) | 111, 181 |
| BshFI | GGCC | 1 cut(s) | 161 |
| BsiEI | CGRYCG | 2 cut(s) | 111, 181 |
| BsiHKAI | GWGCWC | 1 cut(s) | 62 |
| BsiHKCI | CYCGRG | 1 cut(s) | 128 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 112, 157, 260 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsnI | GGCC | 1 cut(s) | 161 |
| BsoBI | CYCGRG | 1 cut(s) | 128 |
| Bsp1286I | GDGCHC | 1 cut(s) | 62 |
| Bsp143I | GATC | 4 cut(s) | 19, 108, 147, 166 |
| BspANI | GGCC | 1 cut(s) | 161 |
| BspCNI | CTCAG | 1 cut(s) | 148 |
| BspPI | GGATC | 2 cut(s) | 142, 174 |
| BssECI | CCNNGG | 2 cut(s) | 129, 162 |
| BssMI | GATC | 4 cut(s) | 19, 108, 147, 166 |
| BssNI | GRCGYC | 1 cut(s) | 117 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 1 cut(s) | 124 |
| Bst6I | CTCTTC | 1 cut(s) | 247 |
| BstACI | GRCGYC | 1 cut(s) | 117 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 155 |
| BstF5I | GGATG | 1 cut(s) | 139 |
| BstKTI | GATC | 4 cut(s) | 22, 111, 150, 169 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstMBI | GATC | 4 cut(s) | 19, 108, 147, 166 |
| BstMCI | CGRYCG | 2 cut(s) | 111, 181 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstNSI | RCATGY | 1 cut(s) | 237 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstV1I | GCAGC | 2 cut(s) | 58, 100 |
| BstV2I | GAAGAC | 2 cut(s) | 107, 134 |
| BstX2I | RGATCY | 1 cut(s) | 147 |
| BstYI | RGATCY | 1 cut(s) | 147 |
| BsuRI | GGCC | 1 cut(s) | 161 |
| BtgZI | GCGATG | 1 cut(s) | 69 |
| BtsCI | GGATG | 1 cut(s) | 139 |
| BtsIMutI | CAGTG | 1 cut(s) | 120 |
| CaiI | CAGNNNCTG | 1 cut(s) | 151 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| Csp6I | GTAC | 1 cut(s) | 125 |
| CviAII | CATG | 2 cut(s) | 188, 234 |
| CviJI | RGCY | 4 cut(s) | 49, 91, 161, 175 |
| CviKI_1 | RGCY | 4 cut(s) | 49, 91, 161, 175 |
| CviQI | GTAC | 1 cut(s) | 125 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| DpnI | GATC | 4 cut(s) | 21, 110, 149, 168 |
| DpnII | GATC | 4 cut(s) | 19, 108, 147, 166 |
| Eam1104I | CTCTTC | 1 cut(s) | 247 |
| EarI | CTCTTC | 1 cut(s) | 247 |
| Eco57I | CTGAAG | 1 cut(s) | 128 |
| Eco88I | CYCGRG | 1 cut(s) | 128 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 160 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| FaeI | CATG | 2 cut(s) | 191, 237 |
| FaiI | YATR | 6 cut(s) | 18, 54, 189, 209, 235, 260 |
| FatI | CATG | 2 cut(s) | 187, 233 |
| FbaI | TGATCA | 1 cut(s) | 19 |
| Fnu4HI | GCNGC | 2 cut(s) | 47, 89 |
| FokI | GGATG | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 2 cut(s) | 47, 89 |
| FspBI | CTAG | 1 cut(s) | 249 |
| GluI | GCNGC | 2 cut(s) | 47, 89 |
| HaeIII | GGCC | 1 cut(s) | 161 |
| Hin1I | GRCGYC | 1 cut(s) | 117 |
| Hin1II | CATG | 2 cut(s) | 191, 237 |
| Hpy188I | TCNGA | 2 cut(s) | 147, 171 |
| Hpy188III | TCNNGA | 3 cut(s) | 151, 227, 249 |
| HpyAV | CCTTC | 1 cut(s) | 208 |
| HpyCH4III | ACNGT | 1 cut(s) | 124 |
| HpyCH4IV | ACGT | 2 cut(s) | 12, 117 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| HpySE526I | ACGT | 2 cut(s) | 12, 117 |
| Hsp92I | GRCGYC | 1 cut(s) | 117 |
| Hsp92II | CATG | 2 cut(s) | 191, 237 |
| Ksp22I | TGATCA | 1 cut(s) | 19 |
| Kzo9I | GATC | 4 cut(s) | 19, 108, 147, 166 |
| LmnI | GCTCC | 1 cut(s) | 54 |
| LpnPI | CCDG | 3 cut(s) | 149, 164, 176 |
| Lsp1109I | GCAGC | 2 cut(s) | 58, 100 |
| LweI | GCATC | 1 cut(s) | 92 |
| MaeI | CTAG | 1 cut(s) | 249 |
| MaeII | ACGT | 2 cut(s) | 12, 117 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 4 cut(s) | 21, 110, 149, 168 |
| MboI | GATC | 4 cut(s) | 19, 108, 147, 166 |
| MboII | GAAGA | 4 cut(s) | 112, 134, 234, 237 |
| MflI | RGATCY | 1 cut(s) | 147 |
| MhlI | GDGCHC | 1 cut(s) | 62 |
| MnlI | CCTC | 5 cut(s) | 106, 106, 124, 151, 250 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| NdeII | GATC | 4 cut(s) | 19, 108, 147, 166 |
| NlaIII | CATG | 2 cut(s) | 191, 237 |
| NmuCI | GTSAC | 1 cut(s) | 118 |
| NspI | RCATGY | 1 cut(s) | 237 |
| PciI | ACATGT | 1 cut(s) | 233 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 104 |
| PkrI | GCNGC | 2 cut(s) | 48, 90 |
| Ple19I | CGATCG | 1 cut(s) | 111 |
| PscI | ACATGT | 1 cut(s) | 233 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| PstNI | CAGNNNCTG | 1 cut(s) | 151 |
| PsuI | RGATCY | 1 cut(s) | 147 |
| PvuI | CGATCG | 1 cut(s) | 111 |
| RsaI | GTAC | 1 cut(s) | 126 |
| RsaNI | GTAC | 1 cut(s) | 125 |
| SatI | GCNGC | 2 cut(s) | 47, 89 |
| Sau3AI | GATC | 4 cut(s) | 19, 108, 147, 166 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SduI | GDGCHC | 1 cut(s) | 62 |
| SetI | ASST | 7 cut(s) | 15, 51, 93, 120, 142, 177, 198 |
| SfaNI | GCATC | 1 cut(s) | 92 |
| SspMI | CTAG | 1 cut(s) | 249 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 1 cut(s) | 124 |
| TaiI | ACGT | 2 cut(s) | 15, 120 |
| TaqI | TCGA | 2 cut(s) | 98, 111 |
| TaqII | GACCGA | 1 cut(s) | 167 |
| TscAI | CASTG | 1 cut(s) | 127 |
| TseFI | GTSAC | 1 cut(s) | 118 |
| TseI | GCWGC | 2 cut(s) | 46, 88 |
| Tsp45I | GTSAC | 1 cut(s) | 118 |
| TspRI | CASTG | 1 cut(s) | 127 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 155 |
| XbaI | TCTAGA | 1 cut(s) | 248 |
| XceI | RCATGY | 1 cut(s) | 237 |
| XspI | CTAG | 1 cut(s) | 249 |
| ZraI | GACGTC | 1 cut(s) | 118 |