Rroxscaffold_2G00154370

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000260
Physical Location & Seq
Reverse (-)
90969642 .. 90975277
5636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154370.1

Sequence Viewer

Length: 1596 bp
ATGAAGATTGTTGAAATGAATCCCTCCTCTATCTCTCAGAAGCATAGATGCCATCAAATCCTAAGAAACCATGCAAAAGCTTCAAACTTTCAACTACATGGTAAAAACTCAAAAACACGCACAGACATAAACACCAACAGGCTGGTGCTGCATACAAAGAGAGTAAGAGATCAAATGAGTACCTTGGGAGTGGCAATGAGGATGTTTGAAGGAAGTCTTTCGATCAGAGACACCGAAATTGAGCGCCGGCCCTACCACAAAAATTGCAACTGTGCTCTAATGAGTACCTTGGGAGTGGCAATGAGGATGTTTGAAGGAAGTCTTTCGATCAGAGACACCGAAATTGAGCGCCGGCCCTACCACAAAAATTGCAACTGTGCTCTCCACAAGTCCAATGCCGATGTGGTTGCGGGTAAGAAGAGACCCCGTAAGGAGACTAAGTGCACGGCAGTGGGTAAGAAGAGACCCCGGAATGGGACAAAGTCCATGGCTGCTCAGACTGCTGACATTAGTACTCAGCACATTGTTCATCAGAGGAGGGCTCGCGGAACTCAGGCCGAAAATGAGGAGGTCACAGAAGTGACTGCATCTTCAACTGGTACTGGCTCTAAAGCTGAGCAAATTAGGAAAAGAACAGGGAATAGGATTGCTGTCAATCTTGATCCTGAGCATGGAAGGCCGACTGATAAAGGCGTTTCAAGCCTTTTGTCTAATGAGTGTGGGAAGATTGTCAGGGAGAAGTGCCCAATGGTGCATGAAACGTGGACAAAGATTTCCAGGGACGTGAAACATAACCTCAGAAAGGAGGTTGAAGTCAACTTTGAAGTTGATGTACAGCGCCCATCAATTATACATTACTTGAATAAGGTTATGGGTAAGGTGTACAGGGAGTTTAAGTGCGAGTTGCACAAGCACTACAAAAAGATGAGGTCCCTTGAAGATGCACTTGATAAACCCCCCAAGGCAATGATAGCTAGAAACGATCCAGATCAGTGGAAGTGTTTGTGTAAACATTTCTCAGAGGAAAAGTTTAAGAGGAAAAGTGAAACCAATGCGAAAAATCGAGCTGGAAAGGAGTATGAGCACTGTGGAGGCTCTCGTCCTCATGGTCTCTATTTTCAAGATAAAGTTCAGGAGGGCTCGAAGTTTCCCGCTATCGAGACCTTCAGAGTGACTCATCTCAAAAAGGGGAGTAATGAATGGATCAGTAACAAAGCTCAAGAACAATATGATAAGATGATTCTGAAAGAGGAGGCCTATCTACAAGGCTTGACAGAGAAGCATCCAGATATTCCAATCAAAGAGTTGCCAATATCCCCTGAGGTCGGGATTGAGATTTTAAAGGAGGTACTTGGTGTGAAACCCAAACAACCAGTTCGTGGATTGGGCAGCTTTTGGGTAAATGAGACATCAACCTCCAGCATTATAGAGGAACTGGAGGAAGTTTATGCTGAACTTGAGAGGGAGAGGGCAATTCGGGCTAAAATTCAAGGAATGTTGAATAATGCCTATGAACGACTTAGTCAGCTTGATCCTAATTTTGAAGCGCCACAGCTTCACCTGGTTGATCCTAATATTGAAGCGCCCCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

531

Amino Acids

60.74

Weight (kDa)

9.46

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 328 - 466 2.6e-12 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1379
AccII CGCG 1 cut(s) 546
AciI CCGC 3 cut(s) 410, 546, 1152
AclWI GGATC 5 cut(s) 656, 977, 1211, 1526, 1562
AcsI RAATTY 1 cut(s) 1485
AcuI CTGAAG 1 cut(s) 1150
AfaI GTAC 7 cut(s) 181, 286, 514, 601, 834, 884, 1350
AfiI CCNNNNNNNGG 6 cut(s) 473, 474, 671, 802, 1325, 1379
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 2 cut(s) 776, 1560
AleI CACNNNNGTG 2 cut(s) 449, 578
AluBI AGCT 9 cut(s) 80, 614, 974, 1067, 1217, 1392, 1528, 1555, 1592
AluI AGCT 9 cut(s) 80, 614, 974, 1067, 1217, 1392, 1528, 1555, 1592
Alw21I GWGCWC 4 cut(s) 277, 382, 446, 1086
Alw26I GTCTC 8 cut(s) 222, 327, 415, 428, 457, 1115, 1154, 1400
Alw44I GTGCAC 1 cut(s) 442
AlwI GGATC 5 cut(s) 656, 977, 1211, 1526, 1562
AoxI GGCC 5 cut(s) 248, 353, 555, 677, 1254
ApaLI GTGCAC 1 cut(s) 442
ApeKI GCWGC 3 cut(s) 148, 491, 1389
ApoI RAATTY 1 cut(s) 1485
Asp700I GAANNNNTTC 2 cut(s) 217, 322
AspLEI GCGC 5 cut(s) 246, 351, 840, 1549, 1585
AspS9I GGNCC 3 cut(s) 249, 354, 930
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 1550
AvaII GGWCC 1 cut(s) 930
AxyI CCTNAGG 1 cut(s) 1320
BaeGI GKGCMC 2 cut(s) 446, 746
BanII GRGCYC 2 cut(s) 544, 1142
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
Bbv12I GWGCWC 4 cut(s) 277, 382, 446, 1086
BbvI GCAGC 3 cut(s) 135, 478, 1401
BccI CCATC 2 cut(s) 60, 850
BceAI ACGGC 1 cut(s) 462
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 2 cut(s) 778, 1562
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 8 cut(s) 222, 327, 415, 428, 457, 1115, 1154, 1400
BfaI CTAG 1 cut(s) 975
BfoI RGCGCY 5 cut(s) 247, 352, 841, 1550, 1586
BisI GCNGC 3 cut(s) 149, 492, 1390
BlpI GCTNAGC 1 cut(s) 615
BlsI GCNGC 3 cut(s) 150, 493, 1391
BmcAI AGTACT 1 cut(s) 514
Bme1390I CCNGG 3 cut(s) 469, 778, 1562
Bme18I GGWCC 1 cut(s) 930
BmgBI CACGTC 1 cut(s) 784
BmgT120I GGNCC 3 cut(s) 249, 354, 930
BmiI GGNNCC 1 cut(s) 932
BmrFI CCNGG 3 cut(s) 469, 778, 1562
BmsI GCATC 4 cut(s) 38, 596, 931, 1291
BplI GAGNNNNNCTC 2 cut(s) 526, 558
BpmI CTGGAG 2 cut(s) 1402, 1457
Bpu10I CCTNAGC 1 cut(s) 666
Bpu1102I GCTNAGC 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 1203, 1478
BpuMI CCSGG 1 cut(s) 469
BsaBI GATNNNNATC 1 cut(s) 987
BsaI GGTCTC 4 cut(s) 415, 457, 1115, 1154
BsaJI CCNNGG 6 cut(s) 183, 288, 467, 486, 777, 960
BsaXI ACNNNNNCTCC 4 cut(s) 425, 455, 881, 911
Bsc4I CCNNNNNNNGG 6 cut(s) 473, 474, 671, 802, 1325, 1379
Bse118I RCCGGY 2 cut(s) 246, 351
Bse1I ACTGG 4 cut(s) 601, 607, 1373, 1440
Bse21I CCTNAGG 1 cut(s) 1320
Bse3DI GCAATG 3 cut(s) 201, 306, 972
Bse8I GATNNNNATC 1 cut(s) 987
BseBI CCWGG 2 cut(s) 778, 1562
BseDI CCNNGG 6 cut(s) 183, 288, 467, 486, 777, 960
BseGI GGATG 3 cut(s) 207, 312, 1282
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 6 cut(s) 473, 474, 671, 802, 1325, 1379
BseMI GCAATG 3 cut(s) 201, 306, 972
BseMII CTCAG 9 cut(s) 50, 509, 530, 566, 606, 657, 811, 1032, 1311
BseNI ACTGG 4 cut(s) 601, 607, 1373, 1440
BseRI GAGGAG 4 cut(s) 16, 550, 581, 1265
BseSI GKGCMC 2 cut(s) 446, 746
BseXI GCAGC 3 cut(s) 135, 478, 1401
BseYI CCCAGC 1 cut(s) 1588
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 5 cut(s) 250, 355, 557, 679, 1256
BsiHKAI GWGCWC 4 cut(s) 277, 382, 446, 1086
BsiSI CCGG 3 cut(s) 247, 352, 469
BslFI GGGAC 3 cut(s) 490, 794, 916
BslI CCNNNNNNNGG 6 cut(s) 473, 474, 671, 802, 1325, 1379
BsmAI GTCTC 8 cut(s) 222, 327, 415, 428, 457, 1115, 1154, 1400
BsmFI GGGAC 3 cut(s) 490, 794, 916
BsnI GGCC 5 cut(s) 250, 355, 557, 679, 1256
Bso31I GGTCTC 4 cut(s) 415, 457, 1115, 1154
Bsp1286I GDGCHC 7 cut(s) 277, 382, 446, 544, 746, 1086, 1142
Bsp1407I TGTACA 2 cut(s) 832, 882
Bsp143I GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
Bsp1720I GCTNAGC 1 cut(s) 615
Bsp19I CCATGG 1 cut(s) 486
BspACI CCGC 3 cut(s) 410, 546, 1152
BspANI GGCC 5 cut(s) 250, 355, 557, 679, 1256
BspCNI CTCAG 9 cut(s) 49, 508, 529, 565, 607, 658, 810, 1031, 1312
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 932
BspPI GGATC 5 cut(s) 656, 977, 1211, 1526, 1562
BspTNI GGTCTC 4 cut(s) 415, 457, 1115, 1154
BsrDI GCAATG 3 cut(s) 201, 306, 972
BsrFI RCCGGY 2 cut(s) 246, 351
BsrGI TGTACA 2 cut(s) 832, 882
BsrI ACTGG 4 cut(s) 601, 607, 1373, 1440
BssAI RCCGGY 2 cut(s) 246, 351
BssECI CCNNGG 6 cut(s) 183, 288, 467, 486, 777, 960
BssMI GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
BssT1I CCWWGG 4 cut(s) 183, 288, 486, 960
Bst2UI CCWGG 2 cut(s) 778, 1562
Bst4CI ACNGT 3 cut(s) 272, 377, 1088
Bst6I CTCTTC 2 cut(s) 413, 455
BstAUI TGTACA 2 cut(s) 832, 882
BstC8I GCNNGC 3 cut(s) 248, 353, 544
BstDSI CCRYGG 1 cut(s) 486
BstENI CCTNNNNNAGG 1 cut(s) 800
BstF5I GGATG 3 cut(s) 207, 312, 1282
BstFNI CGCG 1 cut(s) 546
BstH2I RGCGCY 5 cut(s) 247, 352, 841, 1550, 1586
BstHHI GCGC 5 cut(s) 246, 351, 840, 1549, 1585
BstKTI GATC 9 cut(s) 172, 225, 330, 664, 985, 991, 1206, 1534, 1570
BstMAI GTCTC 8 cut(s) 222, 327, 415, 428, 457, 1115, 1154, 1400
BstMBI GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
BstMWI GCNNNNNNNGC 7 cut(s) 148, 500, 676, 699, 971, 1478, 1589
BstNI CCWGG 2 cut(s) 778, 1562
BstSCI CCNGG 3 cut(s) 467, 776, 1560
BstSLI GKGCMC 2 cut(s) 446, 746
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 3 cut(s) 135, 478, 1401
BstXI CCANNNNNNTGG 2 cut(s) 142, 993
Bsu36I CCTNAGG 1 cut(s) 1320
BsuRI GGCC 5 cut(s) 250, 355, 557, 679, 1256
BtgI CCRYGG 1 cut(s) 486
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 3 cut(s) 207, 312, 1282
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 456, 998, 1084
Cac8I GCNNGC 3 cut(s) 248, 353, 544
CfoI GCGC 5 cut(s) 246, 351, 840, 1549, 1585
Cfr10I RCCGGY 2 cut(s) 246, 351
Cfr13I GGNCC 3 cut(s) 249, 354, 930
CsiI ACCWGGT 1 cut(s) 1560
Csp6I GTAC 7 cut(s) 180, 285, 513, 600, 833, 883, 1349
CspCI CAANNNNNGTGG 4 cut(s) 245, 280, 350, 385
CviAII CATG 6 cut(s) 71, 98, 487, 671, 755, 1106
CviQI GTAC 7 cut(s) 180, 285, 513, 600, 833, 883, 1349
DpnI GATC 9 cut(s) 171, 224, 329, 663, 984, 990, 1205, 1533, 1569
DpnII GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
DraI TTTAAA 1 cut(s) 1341
Eam1104I CTCTTC 2 cut(s) 413, 455
EarI CTCTTC 2 cut(s) 413, 455
Eco130I CCWWGG 4 cut(s) 183, 288, 486, 960
Eco147I AGGCCT 1 cut(s) 1256
Eco24I GRGCYC 2 cut(s) 544, 1142
Eco31I GGTCTC 4 cut(s) 415, 457, 1115, 1154
Eco47I GGWCC 1 cut(s) 930
Eco57I CTGAAG 1 cut(s) 1150
Eco81I CCTNAGG 1 cut(s) 1320
EcoNI CCTNNNNNAGG 1 cut(s) 800
EcoO109I RGGNCCY 1 cut(s) 930
EcoRII CCWGG 2 cut(s) 776, 1560
EcoT14I CCWWGG 4 cut(s) 183, 288, 486, 960
EcoT38I GRGCYC 2 cut(s) 544, 1142
ErhI CCWWGG 4 cut(s) 183, 288, 486, 960
FaeI CATG 6 cut(s) 74, 101, 490, 674, 758, 1109
FalI AAGNNNNNCTT 6 cut(s) 201, 233, 306, 338, 930, 962
FaqI GGGAC 3 cut(s) 490, 794, 916
FatI CATG 6 cut(s) 70, 97, 486, 670, 754, 1105
FauI CCCGC 2 cut(s) 403, 1159
Fnu4HI GCNGC 3 cut(s) 149, 492, 1390
FokI GGATG 3 cut(s) 214, 319, 1269
FriOI GRGCYC 2 cut(s) 544, 1142
Fsp4HI GCNGC 3 cut(s) 149, 492, 1390
FspBI CTAG 1 cut(s) 975
GlaI GCGC 5 cut(s) 245, 350, 839, 1548, 1584
GluI GCNGC 3 cut(s) 149, 492, 1390
GsaI CCCAGC 1 cut(s) 1592
GsuI CTGGAG 2 cut(s) 1402, 1457
HaeII RGCGCY 5 cut(s) 247, 352, 841, 1550, 1586
HaeIII GGCC 5 cut(s) 250, 355, 557, 679, 1256
HapII CCGG 3 cut(s) 247, 352, 469
HhaI GCGC 5 cut(s) 246, 351, 840, 1549, 1585
Hin1II CATG 6 cut(s) 74, 101, 490, 674, 758, 1109
Hin6I GCGC 5 cut(s) 244, 349, 838, 1547, 1583
HinP1I GCGC 5 cut(s) 244, 349, 838, 1547, 1583
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 3 cut(s) 19, 1174, 1240
HpaII CCGG 3 cut(s) 247, 352, 469
HphI GGTGA 1 cut(s) 1550
Hpy166II GTNNAC 5 cut(s) 444, 765, 817, 883, 1010
Hpy188I TCNGA 9 cut(s) 39, 227, 332, 498, 534, 800, 1021, 1169, 1245
Hpy188III TCNNGA 9 cut(s) 659, 665, 986, 1121, 1133, 1159, 1220, 1286, 1327
Hpy8I GTNNAC 5 cut(s) 444, 765, 817, 883, 1010
HpyAV CCTTC 4 cut(s) 203, 308, 669, 1174
HpyCH4III ACNGT 3 cut(s) 272, 377, 1088
HpyCH4IV ACGT 2 cut(s) 761, 783
HpyCH4V TGCA 9 cut(s) 74, 151, 267, 372, 444, 587, 754, 907, 944
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 500, 676, 699, 971, 1478, 1589
HpySE526I ACGT 2 cut(s) 761, 783
Hsp92II CATG 6 cut(s) 74, 101, 490, 674, 758, 1109
HspAI GCGC 5 cut(s) 244, 349, 838, 1547, 1583
KroI GCCGGC 2 cut(s) 246, 351
KroNI GCCGGC 2 cut(s) 248, 353
Kzo9I GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
Lsp1109I GCAGC 3 cut(s) 135, 478, 1401
LweI GCATC 4 cut(s) 38, 596, 931, 1291
MabI ACCWGGT 1 cut(s) 1560
MaeI CTAG 1 cut(s) 975
MaeII ACGT 2 cut(s) 761, 783
MaeIII GTNAC 4 cut(s) 571, 580, 1171, 1208
MalI GATC 9 cut(s) 171, 224, 329, 663, 984, 990, 1205, 1533, 1569
MboI GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
MboII GAAGA 6 cut(s) 16, 430, 472, 582, 736, 950
MhlI GDGCHC 7 cut(s) 277, 382, 446, 544, 746, 1086, 1142
MluCI AATT 9 cut(s) 237, 262, 342, 367, 621, 846, 1473, 1485, 1537
MlyI GAGTC 1 cut(s) 1168
MroNI GCCGGC 2 cut(s) 246, 351
MroXI GAANNNNTTC 2 cut(s) 217, 322
MseI TTAA 3 cut(s) 894, 1032, 1340
MslI CAYNNNNRTG 2 cut(s) 449, 578
MspI CCGG 3 cut(s) 247, 352, 469
MspR9I CCNGG 3 cut(s) 469, 778, 1562
MvaI CCWGG 2 cut(s) 778, 1562
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 7 cut(s) 148, 500, 676, 699, 971, 1478, 1589
NaeI GCCGGC 2 cut(s) 248, 353
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 486
NdeII GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
NgoMIV GCCGGC 2 cut(s) 246, 351
NlaIII CATG 6 cut(s) 74, 101, 490, 674, 758, 1109
NlaIV GGNNCC 1 cut(s) 932
NmuCI GTSAC 3 cut(s) 571, 580, 1171
OliI CACNNNNGTG 2 cut(s) 449, 578
PceI AGGCCT 1 cut(s) 1256
PdiI GCCGGC 2 cut(s) 248, 353
PdmI GAANNNNTTC 2 cut(s) 217, 322
PfeI GAWTC 2 cut(s) 19, 1240
PflFI GACNNNGTC 2 cut(s) 481, 1521
PflMI CCANNNNNTGG 1 cut(s) 1379
PkrI GCNGC 3 cut(s) 150, 493, 1391
PleI GAGTC 1 cut(s) 1168
PpsI GAGTC 1 cut(s) 1168
PpuMI RGGWCCY 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 930
Psp6I CCWGG 2 cut(s) 776, 1560
PspFI CCCAGC 1 cut(s) 1588
PspGI CCWGG 2 cut(s) 776, 1560
PspN4I GGNNCC 1 cut(s) 932
PspPI GGNCC 3 cut(s) 249, 354, 930
PspPPI RGGWCCY 1 cut(s) 930
PsyI GACNNNGTC 2 cut(s) 481, 1521
RsaI GTAC 7 cut(s) 181, 286, 514, 601, 834, 884, 1350
RsaNI GTAC 7 cut(s) 180, 285, 513, 600, 833, 883, 1349
RseI CAYNNNNRTG 2 cut(s) 449, 578
SaqAI TTAA 3 cut(s) 894, 1032, 1340
SatI GCNGC 3 cut(s) 149, 492, 1390
Sau3AI GATC 9 cut(s) 169, 222, 327, 661, 982, 988, 1203, 1531, 1567
Sau96I GGNCC 3 cut(s) 249, 354, 930
ScaI AGTACT 1 cut(s) 514
SchI GAGTC 1 cut(s) 1168
ScrFI CCNGG 3 cut(s) 469, 778, 1562
SduI GDGCHC 7 cut(s) 277, 382, 446, 544, 746, 1086, 1142
SexAI ACCWGGT 1 cut(s) 1560
SfaNI GCATC 4 cut(s) 38, 596, 931, 1291
SinI GGWCC 1 cut(s) 930
SmiMI CAYNNNNRTG 2 cut(s) 449, 578
SmlI CTYRAG 2 cut(s) 1218, 1457
SmoI CTYRAG 2 cut(s) 1218, 1457
Sse9I AATT 9 cut(s) 237, 262, 342, 367, 621, 846, 1473, 1485, 1537
SseBI AGGCCT 1 cut(s) 1256
SsiI CCGC 3 cut(s) 410, 546, 1152
SspI AATATT 1 cut(s) 1576
SspMI CTAG 1 cut(s) 975
StuI AGGCCT 1 cut(s) 1256
StyD4I CCNGG 3 cut(s) 467, 776, 1560
StyI CCWWGG 4 cut(s) 183, 288, 486, 960
TaaI ACNGT 3 cut(s) 272, 377, 1088
TaiI ACGT 2 cut(s) 764, 786
TaqI TCGA 5 cut(s) 221, 326, 1063, 1142, 1158
TasI AATT 9 cut(s) 237, 262, 342, 367, 621, 846, 1473, 1485, 1537
TatI WGTACW 3 cut(s) 512, 832, 882
TfiI GAWTC 2 cut(s) 19, 1240
Tru1I TTAA 3 cut(s) 894, 1032, 1340
Tru9I TTAA 3 cut(s) 894, 1032, 1340
TscAI CASTG 3 cut(s) 456, 998, 1091
TseFI GTSAC 3 cut(s) 571, 580, 1171
TseI GCWGC 3 cut(s) 148, 491, 1389
Tsp45I GTSAC 3 cut(s) 571, 580, 1171
TspDTI ATGAA 6 cut(s) 17, 32, 518, 771, 1212, 1527
TspRI CASTG 3 cut(s) 456, 998, 1091
Tth111I GACNNNGTC 2 cut(s) 481, 1521
Van91I CCANNNNNTGG 1 cut(s) 1379
VneI GTGCAC 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 930
XagI CCTNNNNNAGG 1 cut(s) 800
XapI RAATTY 1 cut(s) 1485
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XmnI GAANNNNTTC 2 cut(s) 217, 322
XspI CTAG 1 cut(s) 975
ZrmI AGTACT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.