MD00G1145500.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000260
Physical Location & Seq
Forward (+)
31865168 .. 31869536
4369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1145500.v1.1.491

Sequence Viewer

Length: 438 bp
ATGTCGCGGTTGATCACTCGTTGTCAGAGTGTGATCGAGGCGGCTCCCTCATTATCAGCATCTACTGCTCCAAGCGTGAGTGCTCCATTGATTGGGGAGCCTACACCCCTTACTGAGGCTACTCCTACGGCATCCCAGGTGCCCGTCTCATCGACATCATCAGTGTCGATTCAGCCGCTCAGTGCACGGCGGCCTCATCGGCGCCGCCGCGAGTCGGAGCCTTCTGATCACACTTCCTTAGCATCCAGAGTTGAGGATGAGGCCTCCCATCCAGTGGGACTCTTGGACAGATATTCCTCAGAGGACGATGGAACTGGTGCTAGACTAGTTGTCGTTTTTTATCTTAAGGACATATCCCCCGAGGCCATGGCCTACTTAGAGGAGGGCTTAGCAACCCAGTACAAACATTGGAAGAACTATCTTCACACGCATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

146

Amino Acids

15.84

Weight (kDa)

6.05

Isoelectric Point (pI)

68.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000260)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01701 FvH4_4g03270
malus_domestica MD00G1017800.v1.1 MD00G1142300.v1.1 MD00G1145500.v1.1 MD00G1191000.v1.1 MD01G1112800.v1.1 MD01G1143700.v1.1 MD02G1048600.v1.1 MD02G1196000.v1.1 MD03G1062700.v1.1 MD03G1095500.v1.1 MD03G1095600.v1.1 MD03G1125500.v1.1 MD03G1154200.v1.1 MD03G1154300.v1.1 MD03G1170400.v1.1 MD03G1179800.v1.1 MD03G1196800.v1.1 MD03G1255700.v1.1 MD04G1029900.v1.1 MD04G1054700.v1.1 MD04G1102500.v1.1 MD04G1142700.v1.1 MD05G1052900.v1.1 MD05G1063000.v1.1 MD05G1069200.v1.1 MD05G1160700.v1.1 MD05G1235500.v1.1 MD05G1285100.v1.1 MD05G1321300.v1.1 MD07G1170900.v1.1 MD08G1072400.v1.1 MD08G1151000.v1.1 MD09G1075100.v1.1 MD11G1004200.v1.1 MD11G1134000.v1.1 MD11G1134100.v1.1 MD11G1150600.v1.1 MD11G1167200.v1.1 MD11G1169500.v1.1 MD11G1191200.v1.1 MD11G1215700.v1.1 MD12G1110400.v1.1 MD12G1226000.v1.1 MD14G1070600.v1.1 MD15G1246900.v1.1 MD15G1271300.v1.1 MD15G1304400.v1.1 MD15G1306500.v1.1 MD15G1394800.v1.1 MD16G1222400.v1.1 MD16G1235600.v1.1 MD16G1275200.v1.1 MD17G1164900.v1.1 MD17G1199400.v1.1 MD17G1200600.v1.1 MD17G1255500.v1.1
prunus_persica Prupe.5G199500_v2.0.a1
pyrus_communis pycom01g05550 pycom01g06510 pycom01g10640 pycom02g04780 pycom02g10380 pycom02g16940 pycom02g21170 pycom02g25250 pycom03g11350 pycom03g15980 pycom03g17500 pycom04g07430 pycom04g11390 pycom05g02890 pycom05g12620 pycom05g21240 pycom06g01740 pycom06g06680 pycom06g08420 pycom07g09890 pycom07g10330 pycom07g13390 pycom07g13400 pycom07g14390 pycom08g04050 pycom08g04060 pycom08g09610 pycom08g14690 pycom09g14670 pycom09g14680 pycom09g19450 pycom10g09940 pycom10g14290 pycom11g03600 pycom11g13710 pycom11g14810 pycom11g17720 pycom12g02240 pycom12g06830 pycom12g09950 pycom12g13060 pycom13g02180 pycom13g07740 pycom13g21900 pycom13g23040 pycom14g10400 pycom14g10410 pycom14g10490 pycom14g10680 pycom14g13340 pycom15g15950 pycom15g31530 pycom15g31550 pycom15g38660 pycom16g08600 pycom16g20570 pycom17g09630 pycom17g09650 pycom17g16800 pycom17g16830 pycom17g24070
rosa_chinensis RchiOBHm_Chr2g0086631
rosa_laevigata RLG00000015768
rosa_multiflora Rmu_co8061662.1_g000001 Rmu_co8118782.1_g000001
rosa_roxburghii Rroxscaffold_2G00154370
rosa_rugosa Rorug01G0468000
rosa_samantha Rh2AG019800 Rh2BG019700 Rh2BG019800 Rh2CG019500 Rh2DG020300
rosa_wichuraiana Rw2G001640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 139, 201
AccB7I CCANNNNNTGG 2 cut(s) 92, 274
AccBSI CCGCTC 1 cut(s) 178
AccII CGCG 2 cut(s) 7, 210
AciI CCGC 6 cut(s) 7, 41, 176, 190, 205, 208
AcyI GRCGYC 1 cut(s) 202
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 4 cut(s) 92, 115, 214, 274
AflII CTTAAG 1 cut(s) 344
AhdI GACNNNNNGTC 1 cut(s) 329
AhlI ACTAGT 1 cut(s) 325
AjnI CCWGG 1 cut(s) 135
Alw21I GWGCWC 2 cut(s) 85, 187
Alw26I GTCTC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 4 cut(s) 191, 261, 363, 369
ApaLI GTGCAC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 359
BaeGI GKGCMC 2 cut(s) 144, 187
BanI GGYRCC 2 cut(s) 139, 201
Bbv12I GWGCWC 2 cut(s) 85, 187
BccI CCATC 2 cut(s) 276, 302
BceAI ACGGC 2 cut(s) 144, 203
BciT130I CCWGG 1 cut(s) 137
BclI TGATCA 2 cut(s) 12, 226
BcoDI GTCTC 1 cut(s) 151
BcuI ACTAGT 1 cut(s) 325
BfaI CTAG 2 cut(s) 321, 326
BfoI RGCGCY 1 cut(s) 205
BfrI CTTAAG 1 cut(s) 344
BglI GCCNNNNNGGC 1 cut(s) 199
BisI GCNGC 5 cut(s) 42, 176, 191, 205, 208
BlpI GCTNAGC 1 cut(s) 388
BlsI GCNGC 5 cut(s) 43, 177, 192, 206, 209
Bme1390I CCNGG 1 cut(s) 137
BmeRI GACNNNNNGTC 1 cut(s) 329
BmeT110I CYCGRG 1 cut(s) 359
BmiI GGNNCC 5 cut(s) 45, 99, 141, 203, 219
BmrFI CCNGG 1 cut(s) 137
BmrI ACTGGG 1 cut(s) 391
BmsI GCATC 3 cut(s) 68, 140, 251
BmuI ACTGGG 1 cut(s) 391
Bpu10I CCTNAGC 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 135, 360, 366
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 115, 214, 274
Bse1I ACTGG 3 cut(s) 272, 319, 397
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 135, 360, 366
BseGI GGATG 4 cut(s) 131, 242, 262, 268
BseLI CCNNNNNNNGG 4 cut(s) 92, 115, 214, 274
BseMII CTCAG 3 cut(s) 105, 193, 312
BseNI ACTGG 3 cut(s) 272, 319, 397
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 2 cut(s) 144, 187
Bsh1236I CGCG 2 cut(s) 7, 210
BshFI GGCC 4 cut(s) 193, 263, 365, 371
BshNI GGYRCC 2 cut(s) 139, 201
BsiHKAI GWGCWC 2 cut(s) 85, 187
BsiHKCI CYCGRG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 4 cut(s) 92, 115, 214, 274
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 4 cut(s) 193, 263, 365, 371
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 85, 144, 187
Bsp143I GATC 3 cut(s) 12, 33, 226
Bsp1720I GCTNAGC 1 cut(s) 388
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 6 cut(s) 7, 41, 176, 190, 205, 208
BspANI GGCC 4 cut(s) 193, 263, 365, 371
BspCNI CTCAG 3 cut(s) 106, 192, 311
BspFNI CGCG 2 cut(s) 7, 210
BspLI GGNNCC 5 cut(s) 45, 99, 141, 203, 219
BspT107I GGYRCC 2 cut(s) 139, 201
BspTI CTTAAG 1 cut(s) 344
BsrBI CCGCTC 1 cut(s) 178
BsrI ACTGG 3 cut(s) 272, 319, 397
BssECI CCNNGG 3 cut(s) 135, 360, 366
BssMI GATC 3 cut(s) 12, 33, 226
BssNI GRCGYC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 137
BstACI GRCGYC 1 cut(s) 202
BstAFI CTTAAG 1 cut(s) 344
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 6 cut(s) 114, 179, 238, 298, 376, 388
BstDSI CCRYGG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 4 cut(s) 131, 242, 262, 268
BstFNI CGCG 2 cut(s) 7, 210
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 3 cut(s) 15, 36, 229
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 12, 33, 226
BstMWI GCNNNNNNNGC 2 cut(s) 65, 199
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstSLI GKGCMC 2 cut(s) 144, 187
BstUI CGCG 2 cut(s) 7, 210
BsuRI GGCC 4 cut(s) 193, 263, 365, 371
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 131, 242, 262, 268
BtsIMutI CAGTG 3 cut(s) 168, 187, 279
CfoI GCGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 400
CviAII CATG 1 cut(s) 367
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 6 cut(s) 114, 179, 238, 298, 376, 388
DinI GGCGCC 1 cut(s) 203
DpnI GATC 3 cut(s) 14, 35, 228
DpnII GATC 3 cut(s) 12, 33, 226
DriI GACNNNNNGTC 1 cut(s) 329
Eam1105I GACNNNNNGTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 366
Eco147I AGGCCT 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 366
EgeI GGCGCC 1 cut(s) 203
EheI GGCGCC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 366
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 1 cut(s) 370
FaiI YATR 2 cut(s) 353, 368
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 366
FbaI TGATCA 2 cut(s) 12, 226
Fnu4HI GCNGC 5 cut(s) 42, 176, 191, 205, 208
FokI GGATG 4 cut(s) 118, 229, 255, 269
Fsp4HI GCNGC 5 cut(s) 42, 176, 191, 205, 208
FspBI CTAG 2 cut(s) 321, 326
GlaI GCGC 1 cut(s) 203
GluI GCNGC 5 cut(s) 42, 176, 191, 205, 208
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 4 cut(s) 193, 263, 365, 371
HhaI GCGC 1 cut(s) 204
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 3 cut(s) 169, 212, 279
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 4 cut(s) 27, 217, 226, 301
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 199
HpyF3I CTNAG 6 cut(s) 114, 179, 238, 298, 376, 388
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 202
KasI GGCGCC 1 cut(s) 201
Ksp22I TGATCA 2 cut(s) 12, 226
Kzo9I GATC 3 cut(s) 12, 33, 226
LmnI GCTCC 5 cut(s) 49, 73, 88, 97, 217
LpnPI CCDG 6 cut(s) 122, 149, 259, 285, 300, 410
LweI GCATC 3 cut(s) 68, 140, 251
MaeI CTAG 2 cut(s) 321, 326
MalI GATC 3 cut(s) 14, 35, 228
MbiI CCGCTC 1 cut(s) 178
MboI GATC 3 cut(s) 12, 33, 226
MboII GAAGA 2 cut(s) 413, 424
MhlI GDGCHC 3 cut(s) 85, 144, 187
Mly113I GGCGCC 1 cut(s) 202
MlyI GAGTC 2 cut(s) 221, 273
MmeI TCCRAC 1 cut(s) 195
MseI TTAA 1 cut(s) 345
MspCI CTTAAG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MvnI CGCG 2 cut(s) 7, 210
MwoI GCNNNNNNNGC 2 cut(s) 65, 199
NarI GGCGCC 1 cut(s) 202
NcoI CCATGG 1 cut(s) 366
NdeII GATC 3 cut(s) 12, 33, 226
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 5 cut(s) 45, 99, 141, 203, 219
PceI AGGCCT 1 cut(s) 263
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 2 cut(s) 92, 274
PkrI GCNGC 5 cut(s) 43, 177, 192, 206, 209
PleI GAGTC 2 cut(s) 220, 273
PluTI GGCGCC 1 cut(s) 205
PpsI GAGTC 2 cut(s) 220, 273
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 5 cut(s) 45, 99, 141, 203, 219
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 5 cut(s) 42, 176, 191, 205, 208
Sau3AI GATC 3 cut(s) 12, 33, 226
SchI GAGTC 2 cut(s) 221, 273
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 3 cut(s) 85, 144, 187
SetI ASST 1 cut(s) 141
SfaNI GCATC 3 cut(s) 68, 140, 251
SfoI GGCGCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 325
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 6 cut(s) 7, 41, 176, 190, 205, 208
SspDI GGCGCC 1 cut(s) 201
SspMI CTAG 2 cut(s) 321, 326
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 366
TaqI TCGA 3 cut(s) 36, 152, 167
TatI WGTACW 1 cut(s) 399
TauI GCSGC 5 cut(s) 44, 178, 193, 207, 210
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 3 cut(s) 168, 187, 279
TspRI CASTG 3 cut(s) 168, 187, 279
Van91I CCANNNNNTGG 2 cut(s) 92, 274
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 1 cut(s) 183
XagI CCTNNNNNAGG 1 cut(s) 113
XspI CTAG 2 cut(s) 321, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.